Wall clock time and date at job start Tue Mar 31 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50700 * 119.99962 * 2 1 4 4 C 1.31004 * 119.99935 * 179.97438 * 2 1 3 5 5 C 1.50704 * 119.99822 * 8.68828 * 4 2 1 6 6 N 1.46495 * 109.46900 * 126.29047 * 5 4 2 7 7 C 1.40009 * 120.00066 * 179.97438 * 6 5 4 8 8 C 1.38643 * 120.09570 * 0.02562 * 7 6 5 9 9 C 1.38281 * 120.00444 * 180.27234 * 8 7 6 10 10 C 1.38276 * 120.19958 * 359.48683 * 9 8 7 11 11 C 1.38247 * 120.19921 * 0.51353 * 10 9 8 12 12 C 1.38729 * 119.99192 * 359.74252 * 11 10 9 13 13 S 1.76198 * 120.10166 * 179.97438 * 12 11 10 14 14 C 1.81403 * 103.00034 * 357.93359 * 13 12 11 15 15 H 1.09003 * 109.46828 * 45.02223 * 14 13 12 16 16 C 1.52999 * 109.47315 * 285.02487 * 14 13 12 17 17 C 1.50696 * 109.47224 * 165.01960 * 14 13 12 18 18 H 1.07997 * 119.99767 * 4.89665 * 17 14 13 19 19 C 1.37880 * 119.99872 * 184.89286 * 17 14 13 20 20 N 1.31515 * 119.99918 * 192.41907 * 19 17 14 21 21 Si 1.86796 * 120.00008 * 12.42224 * 19 17 14 22 22 H 1.48504 * 109.47166 * 94.80567 * 21 19 17 23 23 H 1.48504 * 109.46936 * 214.79932 * 21 19 17 24 24 H 1.48493 * 109.47317 * 334.80132 * 21 19 17 25 25 H 1.08998 * 109.47521 * 183.87798 * 1 2 3 26 26 H 1.08994 * 109.47339 * 303.88800 * 1 2 3 27 27 H 1.09009 * 109.46608 * 63.88374 * 1 2 3 28 28 H 1.09001 * 109.46687 * 269.99190 * 3 2 1 29 29 H 1.08995 * 109.47328 * 29.99207 * 3 2 1 30 30 H 1.09001 * 109.47201 * 149.99726 * 3 2 1 31 31 H 1.07994 * 119.99686 * 188.69110 * 4 2 1 32 32 H 1.09002 * 109.47178 * 6.29129 * 5 4 2 33 33 H 1.08995 * 109.47031 * 246.29383 * 5 4 2 34 34 H 0.97001 * 119.99864 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.00082 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.90176 * 179.72315 * 9 8 7 37 37 H 1.08005 * 119.89766 * 180.27864 * 10 9 8 38 38 H 1.08003 * 120.00337 * 179.76499 * 11 10 9 39 39 H 1.08999 * 109.47475 * 66.54443 * 16 14 13 40 40 H 1.09001 * 109.47299 * 186.54616 * 16 14 13 41 41 H 1.09005 * 109.46853 * 306.54909 * 16 14 13 42 42 H 0.96992 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4214 -2.4322 -0.1961 6 7 2.0310 -3.1802 -1.2984 7 6 1.5123 -4.4264 -1.6700 8 6 0.4214 -4.9543 -0.9965 9 6 -0.0859 -6.1878 -1.3614 10 6 0.4850 -6.8937 -2.4044 11 6 1.5730 -6.3753 -3.0818 12 6 2.0918 -5.1409 -2.7190 13 16 3.4788 -4.4777 -3.5798 14 6 3.8818 -5.7841 -4.7722 15 1 2.9658 -6.1420 -5.2423 16 6 4.5690 -6.9426 -4.0466 17 6 4.8059 -5.2334 -5.8274 18 1 5.1826 -4.2248 -5.7423 19 6 5.1707 -6.0172 -6.9015 20 7 6.1555 -5.6393 -7.6870 21 14 4.2659 -7.6158 -7.2411 22 1 3.1873 -7.3731 -8.2326 23 1 5.2186 -8.6185 -7.7817 24 1 3.6727 -8.1265 -5.9792 25 1 -0.3634 -1.0253 0.0695 26 1 -0.3634 0.5730 0.8530 27 1 -0.3633 0.4524 -0.9228 28 1 2.4422 1.6196 -1.0277 29 1 1.6714 2.0648 0.5137 30 1 3.2129 1.1748 0.5139 31 1 3.2326 -1.1398 0.1418 32 1 0.3780 -2.2230 -0.4322 33 1 1.4755 -3.0235 0.7180 34 1 2.7945 -2.8123 -1.7703 35 1 -0.0292 -4.4042 -0.1836 36 1 -0.9329 -6.5995 -0.8327 37 1 0.0820 -7.8547 -2.6883 38 1 2.0188 -6.9311 -3.8935 39 1 3.8616 -7.4153 -3.3652 40 1 4.9149 -7.6744 -4.7765 41 1 5.4200 -6.5632 -3.4809 42 1 6.4118 -6.1905 -8.4428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520455507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:27 Heat of formation + Delta-G solvation = 38.236728 kcal Electronic energy + Delta-G solvation = -20320.168783 eV Core-core repulsion = 17391.423763 eV Total energy + Delta-G solvation = -2928.745021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.10658 -37.32606 -34.82956 -34.04622 -31.45855 -30.54408 -29.96627 -28.17291 -27.31584 -25.25620 -24.22859 -22.42552 -21.64558 -20.84097 -18.40361 -17.50332 -16.63523 -16.22451 -16.13713 -15.41102 -14.87238 -14.54173 -14.12339 -14.08414 -13.74923 -13.63149 -13.42250 -13.26751 -12.72060 -12.61334 -12.50953 -12.22709 -12.12702 -11.99102 -11.74975 -11.50123 -11.12001 -11.04012 -10.96455 -10.49226 -10.32294 -9.90102 -9.65329 -9.57686 -9.15729 -8.98612 -8.95485 -8.61912 -7.51540 -6.37725 -6.24329 -4.24513 1.67264 1.81386 1.92333 2.47324 3.18212 3.27236 3.30375 3.48805 3.84462 4.15059 4.28103 4.51094 4.70657 4.98106 5.06072 5.17567 5.26052 5.30785 5.33445 5.39082 5.44019 5.54127 5.58147 5.61829 5.75946 5.79397 5.81081 6.00984 6.14914 6.24921 6.36138 6.41103 6.43084 6.47254 6.64720 6.66869 6.77002 6.90825 7.11218 7.16262 7.42676 7.57146 7.95021 8.24892 8.78394 9.34034 10.87425 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004158 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.178318 B = 6732.228696 C = 8006.588312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C -0.119 4.119 4 C -0.182 4.182 5 C 0.152 3.848 6 N -0.740 5.740 7 C 0.226 3.774 8 C -0.189 4.189 9 C -0.092 4.092 10 C -0.162 4.162 11 C -0.093 4.093 12 C -0.141 4.141 13 S -0.142 6.142 14 C 0.061 3.939 15 H 0.046 0.954 16 C -0.146 4.146 17 C -0.514 4.514 18 H 0.083 0.917 19 C 0.087 3.913 20 N -0.884 5.884 21 Si 0.864 3.136 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.252 1.252 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.405 0.595 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.912 5.854 16.052 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 C -0.176 4.176 4 C -0.201 4.201 5 C 0.029 3.971 6 N -0.372 5.372 7 C 0.118 3.882 8 C -0.214 4.214 9 C -0.114 4.114 10 C -0.183 4.183 11 C -0.118 4.118 12 C -0.258 4.258 13 S 0.104 5.896 14 C -0.068 4.068 15 H 0.064 0.936 16 C -0.205 4.205 17 C -0.553 4.553 18 H 0.101 0.899 19 C -0.119 4.119 20 N -0.521 5.521 21 Si 0.690 3.310 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.176 1.176 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.220 7.001 16.115 20.847 hybrid contribution -0.669 -1.944 -0.700 2.172 sum -11.889 5.057 15.416 20.114 Atomic orbital electron populations 1.21076 0.92352 1.03131 1.02252 1.21653 0.95927 0.95067 0.98691 1.20846 0.99609 0.94663 1.02460 1.22669 1.00171 0.93313 1.03930 1.20389 0.96519 0.90199 0.90023 1.44708 1.36723 1.18159 1.37641 1.17291 0.92828 0.85631 0.92459 1.20423 0.99132 0.98264 1.03555 1.20754 0.99235 0.94298 0.97084 1.20775 0.98317 1.00647 0.98579 1.21161 0.96493 0.94391 0.99770 1.21527 1.03476 0.99134 1.01646 1.85003 1.31752 1.31704 1.41091 1.21275 0.99383 0.91931 0.94170 0.93597 1.22496 1.00273 0.98266 0.99508 1.20368 1.27877 1.02123 1.04945 0.89873 1.24812 0.94039 0.97494 0.95510 1.69902 1.25860 1.39245 1.17071 0.87192 0.80614 0.83857 0.79344 1.20281 1.20830 1.17601 0.90914 0.91382 0.91450 0.90974 0.92004 0.91726 0.86671 0.91274 0.92186 0.75844 0.86529 0.86706 0.86760 0.85499 0.94865 0.92412 0.92269 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.81 36.01 0.35 -0.69 16 2 C -0.11 -1.04 6.04 -101.07 -0.61 -1.65 16 3 C -0.12 -0.93 10.04 36.01 0.36 -0.57 16 4 C -0.18 -1.89 9.22 -36.02 -0.33 -2.23 16 5 C 0.15 1.72 5.03 -5.19 -0.03 1.70 16 6 N -0.74 -10.88 5.68 -59.62 -0.34 -11.22 16 7 C 0.23 3.73 6.66 -83.49 -0.56 3.17 16 8 C -0.19 -2.70 9.31 -39.42 -0.37 -3.07 16 9 C -0.09 -1.27 10.04 -39.55 -0.40 -1.66 16 10 C -0.16 -2.47 10.04 -39.56 -0.40 -2.87 16 11 C -0.09 -1.69 8.35 -39.40 -0.33 -2.02 16 12 C -0.14 -2.66 6.11 -38.92 -0.24 -2.90 16 13 S -0.14 -3.00 19.73 -107.50 -2.12 -5.12 16 14 C 0.06 1.44 1.51 -27.89 -0.04 1.40 16 15 H 0.05 1.09 5.40 -51.92 -0.28 0.81 16 16 C -0.15 -3.19 8.07 37.16 0.30 -2.89 16 17 C -0.51 -14.25 9.03 -34.44 -0.31 -14.56 16 18 H 0.08 2.53 7.96 -52.49 -0.42 2.11 16 19 C 0.09 2.42 5.36 -17.82 -0.10 2.33 16 20 N -0.88 -26.24 13.96 55.43 0.77 -25.47 16 21 Si 0.86 20.46 25.72 -169.99 -4.37 16.09 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.25 -5.54 5.35 56.52 0.30 -5.24 16 25 H 0.07 0.58 5.22 -51.93 -0.27 0.30 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 31 H 0.12 1.19 8.01 -52.49 -0.42 0.77 16 32 H 0.07 0.73 5.07 -51.93 -0.26 0.47 16 33 H 0.06 0.65 7.95 -51.93 -0.41 0.23 16 34 H 0.40 6.34 7.01 -40.82 -0.29 6.05 16 35 H 0.12 1.37 6.74 -52.49 -0.35 1.02 16 36 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.13 2.42 4.76 -52.48 -0.25 2.17 16 39 H 0.03 0.65 6.34 -51.93 -0.33 0.32 16 40 H 0.06 1.28 4.78 -51.93 -0.25 1.03 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -29.57 341.66 -9.74 -39.31 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.14 Total: 7.78 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.69 Total: -26.51 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.44 Total: -36.69 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.37 Total: 16.09 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.12 Total: -5.12 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.57 -9.74 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520455507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.542 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds