Wall clock time and date at job start Tue Mar 31 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50700 * 119.99962 * 2 1 4 4 C 1.31004 * 119.99935 * 179.97438 * 2 1 3 5 5 C 1.50704 * 119.99822 * 8.68828 * 4 2 1 6 6 N 1.46495 * 109.46900 * 126.29047 * 5 4 2 7 7 C 1.40009 * 120.00066 * 179.97438 * 6 5 4 8 8 C 1.38643 * 120.09570 * 0.02562 * 7 6 5 9 9 C 1.38281 * 120.00444 * 180.27234 * 8 7 6 10 10 C 1.38276 * 120.19958 * 359.48683 * 9 8 7 11 11 C 1.38247 * 120.19921 * 0.51353 * 10 9 8 12 12 C 1.38729 * 119.99192 * 359.74252 * 11 10 9 13 13 S 1.76198 * 120.10166 * 179.97438 * 12 11 10 14 14 C 1.81403 * 103.00034 * 357.93359 * 13 12 11 15 15 H 1.09003 * 109.46828 * 45.02223 * 14 13 12 16 16 C 1.52999 * 109.47315 * 285.02487 * 14 13 12 17 17 C 1.50696 * 109.47224 * 165.01960 * 14 13 12 18 18 H 1.07997 * 119.99767 * 4.89665 * 17 14 13 19 19 C 1.37880 * 119.99872 * 184.89286 * 17 14 13 20 20 N 1.31515 * 119.99918 * 192.41907 * 19 17 14 21 21 Si 1.86796 * 120.00008 * 12.42224 * 19 17 14 22 22 H 1.48504 * 109.47166 * 94.80567 * 21 19 17 23 23 H 1.48504 * 109.46936 * 214.79932 * 21 19 17 24 24 H 1.48493 * 109.47317 * 334.80132 * 21 19 17 25 25 H 1.08998 * 109.47521 * 183.87798 * 1 2 3 26 26 H 1.08994 * 109.47339 * 303.88800 * 1 2 3 27 27 H 1.09009 * 109.46608 * 63.88374 * 1 2 3 28 28 H 1.09001 * 109.46687 * 269.99190 * 3 2 1 29 29 H 1.08995 * 109.47328 * 29.99207 * 3 2 1 30 30 H 1.09001 * 109.47201 * 149.99726 * 3 2 1 31 31 H 1.07994 * 119.99686 * 188.69110 * 4 2 1 32 32 H 1.09002 * 109.47178 * 6.29129 * 5 4 2 33 33 H 1.08995 * 109.47031 * 246.29383 * 5 4 2 34 34 H 0.97001 * 119.99864 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.00082 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.90176 * 179.72315 * 9 8 7 37 37 H 1.08005 * 119.89766 * 180.27864 * 10 9 8 38 38 H 1.08003 * 120.00337 * 179.76499 * 11 10 9 39 39 H 1.08999 * 109.47475 * 66.54443 * 16 14 13 40 40 H 1.09001 * 109.47299 * 186.54616 * 16 14 13 41 41 H 1.09005 * 109.46853 * 306.54909 * 16 14 13 42 42 H 0.96992 * 120.00159 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4214 -2.4322 -0.1961 6 7 2.0310 -3.1802 -1.2984 7 6 1.5123 -4.4264 -1.6700 8 6 0.4214 -4.9543 -0.9965 9 6 -0.0859 -6.1878 -1.3614 10 6 0.4850 -6.8937 -2.4044 11 6 1.5730 -6.3753 -3.0818 12 6 2.0918 -5.1409 -2.7190 13 16 3.4788 -4.4777 -3.5798 14 6 3.8818 -5.7841 -4.7722 15 1 2.9658 -6.1420 -5.2423 16 6 4.5690 -6.9426 -4.0466 17 6 4.8059 -5.2334 -5.8274 18 1 5.1826 -4.2248 -5.7423 19 6 5.1707 -6.0172 -6.9015 20 7 6.1555 -5.6393 -7.6870 21 14 4.2659 -7.6158 -7.2411 22 1 3.1873 -7.3731 -8.2326 23 1 5.2186 -8.6185 -7.7817 24 1 3.6727 -8.1265 -5.9792 25 1 -0.3634 -1.0253 0.0695 26 1 -0.3634 0.5730 0.8530 27 1 -0.3633 0.4524 -0.9228 28 1 2.4422 1.6196 -1.0277 29 1 1.6714 2.0648 0.5137 30 1 3.2129 1.1748 0.5139 31 1 3.2326 -1.1398 0.1418 32 1 0.3780 -2.2230 -0.4322 33 1 1.4755 -3.0235 0.7180 34 1 2.7945 -2.8123 -1.7703 35 1 -0.0292 -4.4042 -0.1836 36 1 -0.9329 -6.5995 -0.8327 37 1 0.0820 -7.8547 -2.6883 38 1 2.0188 -6.9311 -3.8935 39 1 3.8616 -7.4153 -3.3652 40 1 4.9149 -7.6744 -4.7765 41 1 5.4200 -6.5632 -3.4809 42 1 6.4118 -6.1905 -8.4428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520455507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:27 Heat of formation + Delta-G solvation = 22.462257 kcal Electronic energy + Delta-G solvation = -20320.852816 eV Core-core repulsion = 17391.423763 eV Total energy + Delta-G solvation = -2929.429053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26258 -38.18207 -36.26571 -35.59454 -33.39236 -31.79454 -31.02894 -28.87957 -28.22478 -27.27871 -25.16225 -23.71335 -23.26720 -22.17004 -19.50619 -18.91560 -18.26578 -17.49473 -17.28506 -16.63077 -16.20666 -15.89610 -15.38730 -15.12467 -15.01923 -14.83403 -14.64361 -14.49406 -14.26044 -13.93306 -13.71079 -13.38553 -13.20001 -13.02180 -12.92238 -12.81100 -12.43666 -12.37761 -12.35732 -11.88603 -11.76383 -11.59859 -11.35336 -10.97211 -10.81920 -10.69968 -10.42345 -9.73322 -8.78532 -8.40311 -7.83465 -6.46249 0.44349 0.72469 0.86620 1.07512 1.30457 1.34726 1.43476 1.87861 2.27486 2.73876 2.93106 2.95367 3.74990 3.98055 4.03282 4.21824 4.25949 4.32773 4.47928 4.51996 4.56614 4.58275 4.60267 4.65631 4.70363 4.78621 4.80170 4.89617 4.92983 4.93846 5.04116 5.11903 5.16602 5.29362 5.35315 5.41821 5.50665 5.70740 5.73081 5.89961 6.00378 6.07111 6.46900 6.54621 6.72644 7.16074 8.75539 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.004158 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.178318 B = 6732.228696 C = 8006.588312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.122 4.122 4 C -0.205 4.205 5 C 0.153 3.847 6 N -0.745 5.745 7 C 0.219 3.781 8 C -0.187 4.187 9 C -0.076 4.076 10 C -0.166 4.166 11 C -0.109 4.109 12 C -0.169 4.169 13 S -0.171 6.171 14 C 0.063 3.937 15 H 0.047 0.953 16 C -0.138 4.138 17 C -0.524 4.524 18 H 0.037 0.963 19 C 0.032 3.968 20 N -0.933 5.933 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.277 1.277 24 H -0.224 1.224 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.396 0.604 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 4.683 18.351 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.179 4.179 4 C -0.223 4.223 5 C 0.031 3.969 6 N -0.375 5.375 7 C 0.110 3.890 8 C -0.212 4.212 9 C -0.097 4.097 10 C -0.188 4.188 11 C -0.134 4.134 12 C -0.286 4.286 13 S 0.073 5.927 14 C -0.065 4.065 15 H 0.064 0.936 16 C -0.197 4.197 17 C -0.563 4.563 18 H 0.055 0.945 19 C -0.169 4.169 20 N -0.571 5.571 21 Si 0.751 3.249 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.147 1.147 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.470 5.838 18.456 24.168 hybrid contribution 0.256 -1.414 -1.288 1.929 sum -14.214 4.424 17.169 22.724 Atomic orbital electron populations 1.21139 0.91183 1.03590 1.03079 1.21955 0.96927 0.95147 0.96569 1.20904 0.99914 0.94497 1.02562 1.22612 0.99982 0.93552 1.06157 1.20538 0.96893 0.90289 0.89177 1.44946 1.36424 1.17952 1.38177 1.17560 0.93351 0.86050 0.92026 1.20822 0.97994 0.98674 1.03663 1.21247 0.99273 0.93401 0.95800 1.21081 0.97349 1.01767 0.98609 1.21194 0.97810 0.94247 1.00127 1.21458 1.03366 1.00470 1.03300 1.84930 1.34553 1.31728 1.41439 1.21062 0.98400 0.93069 0.94015 0.93555 1.22375 1.00382 0.97447 0.99527 1.20533 1.28548 1.00447 1.06727 0.94486 1.25715 0.94528 1.01585 0.95028 1.70039 1.27743 1.41321 1.18022 0.86149 0.79351 0.79156 0.80252 1.19944 1.20208 1.14715 0.90757 0.89610 0.91328 0.91211 0.90348 0.91601 0.87412 0.90082 0.91316 0.76951 0.83573 0.82661 0.84310 0.86988 0.92478 0.92686 0.92998 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.81 71.24 0.70 -1.10 16 2 C -0.10 -1.78 6.04 -16.49 -0.10 -1.88 16 3 C -0.12 -1.76 10.04 71.24 0.71 -1.04 16 4 C -0.20 -4.08 9.22 25.64 0.24 -3.85 16 5 C 0.15 3.21 5.03 85.64 0.43 3.64 16 6 N -0.75 -21.37 5.68 -342.55 -1.94 -23.31 16 7 C 0.22 6.88 6.66 38.24 0.25 7.14 16 8 C -0.19 -4.65 9.31 22.38 0.21 -4.44 16 9 C -0.08 -1.74 10.04 22.29 0.22 -1.52 16 10 C -0.17 -4.51 10.04 22.28 0.22 -4.29 16 11 C -0.11 -3.80 8.35 22.39 0.19 -3.61 16 12 C -0.17 -6.30 6.11 22.70 0.14 -6.16 16 13 S -0.17 -7.49 19.73 -56.49 -1.11 -8.61 16 14 C 0.06 3.05 1.51 29.85 0.04 3.10 16 15 H 0.05 2.21 5.40 -2.39 -0.01 2.20 16 16 C -0.14 -5.99 8.07 71.98 0.58 -5.41 16 17 C -0.52 -30.37 9.03 25.60 0.23 -30.14 16 18 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 19 C 0.03 1.85 5.36 84.66 0.45 2.31 16 20 N -0.93 -57.52 13.96 21.45 0.30 -57.22 16 21 Si 0.93 42.44 25.72 68.60 1.76 44.20 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.22 -9.19 5.35 99.48 0.53 -8.65 16 25 H 0.07 0.97 5.22 -2.39 -0.01 0.96 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.07 0.93 8.03 -2.39 -0.02 0.91 16 31 H 0.11 2.26 8.01 -2.91 -0.02 2.24 16 32 H 0.08 1.50 5.07 -2.39 -0.01 1.49 16 33 H 0.07 1.31 7.95 -2.39 -0.02 1.29 16 34 H 0.40 12.66 7.01 -92.71 -0.65 12.01 16 35 H 0.15 2.74 6.74 -2.91 -0.02 2.72 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.11 4.14 4.76 -2.91 -0.01 4.13 16 39 H 0.06 2.18 6.34 -2.39 -0.02 2.16 16 40 H 0.05 2.38 4.78 -2.39 -0.01 2.36 16 41 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -66.99 341.66 3.73 -63.26 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.20 Total: 28.94 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 4.53 Total: -47.26 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.65 Total: -80.53 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.76 Total: 44.20 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.11 Total: -8.61 kcal Total: -66.99 3.73 -63.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520455507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.724 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds