Wall clock time and date at job start Tue Mar 31 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50703 * 119.99710 * 2 1 4 4 C 1.30992 * 120.00233 * 179.97438 * 2 1 3 5 5 C 1.50701 * 120.00003 * 353.87687 * 4 2 1 6 6 N 1.46504 * 109.47250 * 233.97201 * 5 4 2 7 7 C 1.40003 * 119.99714 * 179.97438 * 6 5 4 8 8 C 1.38647 * 120.10243 * 0.02562 * 7 6 5 9 9 C 1.38282 * 120.00537 * 180.02562 * 8 7 6 10 10 C 1.38270 * 120.20259 * 359.97438 * 9 8 7 11 11 C 1.38244 * 120.20140 * 359.97438 * 10 9 8 12 12 C 1.38729 * 119.99055 * 0.02562 * 11 10 9 13 13 S 1.76200 * 120.10142 * 179.97438 * 12 11 10 14 14 C 1.81407 * 102.99751 * 5.96206 * 13 12 11 15 15 H 1.08994 * 109.47177 * 308.68701 * 14 13 12 16 16 C 1.53001 * 109.46626 * 68.69086 * 14 13 12 17 17 C 1.50705 * 109.46773 * 188.68532 * 14 13 12 18 18 H 1.08001 * 120.00266 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99654 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99960 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99910 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47176 * 89.99347 * 21 19 17 23 23 H 1.48496 * 109.47176 * 209.99909 * 21 19 17 24 24 H 1.48499 * 109.47071 * 329.99682 * 21 19 17 25 25 H 1.08998 * 109.47245 * 264.98641 * 1 2 3 26 26 H 1.08998 * 109.47424 * 24.98641 * 1 2 3 27 27 H 1.09000 * 109.47083 * 144.98480 * 1 2 3 28 28 H 1.09001 * 109.46733 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47030 * 299.99807 * 3 2 1 30 30 H 1.09000 * 109.47591 * 60.00147 * 3 2 1 31 31 H 1.08005 * 120.00239 * 173.87616 * 4 2 1 32 32 H 1.09000 * 109.47091 * 113.97521 * 5 4 2 33 33 H 1.09001 * 109.47442 * 353.97775 * 5 4 2 34 34 H 0.96997 * 120.00229 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.99195 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.89963 * 180.27131 * 9 8 7 37 37 H 1.08006 * 119.90006 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.00491 * 180.02562 * 11 10 9 39 39 H 1.08991 * 109.47708 * 66.67426 * 16 14 13 40 40 H 1.09003 * 109.46605 * 186.67965 * 16 14 13 41 41 H 1.08997 * 109.47169 * 306.66976 * 16 14 13 42 42 H 0.97004 * 120.00140 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4150 -2.4357 0.1403 6 7 1.9777 -3.2048 1.2531 7 6 1.4440 -4.4575 1.5788 8 6 0.3834 -4.9725 0.8492 9 6 -0.1425 -6.2097 1.1730 10 6 0.3865 -6.9372 2.2231 11 6 1.4447 -6.4323 2.9555 12 6 1.9786 -5.1919 2.6378 13 16 3.3269 -4.5452 3.5698 14 6 3.7551 -5.9187 4.6747 15 1 2.8578 -6.2671 5.1860 16 6 4.3531 -7.0645 3.8558 17 6 4.7628 -5.4493 5.6923 18 1 5.1105 -4.4269 5.6762 19 6 5.2409 -6.3252 6.6438 20 7 4.8171 -7.5700 6.6637 21 14 6.4894 -5.7433 7.9056 22 1 5.7790 -5.2218 9.1008 23 1 7.3583 -6.8800 8.3028 24 1 7.3233 -4.6652 7.3160 25 1 -0.3633 -0.0898 1.0237 26 1 -0.3634 0.9314 -0.4341 27 1 -0.3633 -0.8417 -0.5897 28 1 3.3321 1.1060 0.0005 29 1 1.9971 1.8767 -0.8900 30 1 1.9971 1.8768 0.8900 31 1 3.2374 -1.1371 -0.0993 32 1 1.5087 -3.0094 -0.7818 33 1 0.3622 -2.2313 0.3355 34 1 2.7194 -2.8457 1.7647 35 1 -0.0320 -4.4072 0.0281 36 1 -0.9658 -6.6112 0.6008 37 1 -0.0277 -7.9032 2.4715 38 1 1.8557 -7.0034 3.7749 39 1 5.3115 -6.7530 3.4407 40 1 4.5004 -7.9323 4.4989 41 1 3.6731 -7.3247 3.0447 42 1 5.1531 -8.1861 7.3334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520455508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:32 Heat of formation + Delta-G solvation = 26.599487 kcal Electronic energy + Delta-G solvation = -20260.862348 eV Core-core repulsion = 17331.612699 eV Total energy + Delta-G solvation = -2929.249649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.99221 -37.25077 -34.74659 -34.01578 -31.01248 -30.26354 -29.67224 -28.13105 -27.25452 -25.31512 -24.12543 -22.28273 -21.47619 -20.82488 -18.39048 -17.40326 -16.24631 -16.10894 -15.86728 -15.26377 -14.90056 -14.44659 -14.12707 -14.01969 -13.63926 -13.45404 -13.29966 -13.12355 -12.61046 -12.55367 -12.32506 -12.14412 -11.85730 -11.73547 -11.59377 -11.10426 -11.04019 -10.98413 -10.91389 -10.52203 -10.38327 -9.92321 -9.82990 -9.36410 -9.03136 -8.90416 -8.83812 -8.46858 -7.40050 -6.25873 -6.18306 -4.26826 1.80059 1.85140 2.04509 2.65788 3.23971 3.30219 3.34941 3.68799 3.96182 4.27955 4.32594 4.57517 4.71552 5.08311 5.13891 5.24132 5.29227 5.31759 5.35135 5.45580 5.49514 5.59989 5.62739 5.70976 5.75265 5.85137 5.94550 6.12953 6.36755 6.43352 6.58281 6.64756 6.67990 6.79188 6.80903 6.84653 7.04385 7.25087 7.39303 7.64185 7.67582 7.80705 8.03847 8.04821 8.71852 9.36824 10.87878 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004089 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.932001 B = 6846.294582 C = 8402.187065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C -0.118 4.118 4 C -0.181 4.181 5 C 0.156 3.844 6 N -0.741 5.741 7 C 0.223 3.777 8 C -0.192 4.192 9 C -0.094 4.094 10 C -0.162 4.162 11 C -0.088 4.088 12 C -0.133 4.133 13 S -0.184 6.184 14 C 0.102 3.898 15 H 0.049 0.951 16 C -0.139 4.139 17 C -0.510 4.510 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.887 5.887 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.405 0.595 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.020 0.980 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 9.708 -13.325 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.116 4.116 3 C -0.175 4.175 4 C -0.199 4.199 5 C 0.032 3.968 6 N -0.373 5.373 7 C 0.115 3.885 8 C -0.216 4.216 9 C -0.116 4.116 10 C -0.184 4.184 11 C -0.112 4.112 12 C -0.249 4.249 13 S 0.061 5.939 14 C -0.026 4.026 15 H 0.067 0.933 16 C -0.199 4.199 17 C -0.549 4.549 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.524 5.524 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.241 0.759 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.039 10.743 -13.368 18.941 hybrid contribution 0.366 -0.927 0.906 1.346 sum -7.673 9.816 -12.463 17.623 Atomic orbital electron populations 1.20908 0.92314 1.02340 1.02524 1.21660 0.95917 0.95040 0.98939 1.20867 0.99689 0.94886 1.02057 1.22721 1.00060 0.93310 1.03793 1.20273 0.96787 0.89792 0.89979 1.44677 1.39291 1.17299 1.36056 1.17317 0.92982 0.85592 0.92576 1.20398 0.99823 0.98328 1.03083 1.20741 0.99293 0.94222 0.97314 1.20790 0.98868 1.00514 0.98194 1.21244 0.95931 0.94371 0.99703 1.21428 1.03502 0.98911 1.01097 1.84902 1.35080 1.30312 1.43560 1.21023 0.99598 0.89494 0.92437 0.93265 1.22095 0.98892 1.01006 0.97892 1.20639 1.24268 0.97523 1.12506 0.91591 1.24885 0.96479 0.94681 0.97301 1.69883 1.43466 1.04060 1.35010 0.86367 0.80836 0.78394 0.81160 1.20383 1.20974 1.19648 0.91138 0.91866 0.91382 0.91851 0.91753 0.91239 0.86731 0.92237 0.91752 0.75867 0.86700 0.86837 0.86756 0.84959 0.94093 0.89270 0.96060 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.92 36.00 0.32 -0.70 16 2 C -0.11 -1.08 6.05 -101.06 -0.61 -1.70 16 3 C -0.12 -0.94 10.09 36.01 0.36 -0.57 16 4 C -0.18 -1.94 9.23 -36.02 -0.33 -2.27 16 5 C 0.16 1.85 4.95 -5.19 -0.03 1.83 16 6 N -0.74 -11.42 5.68 -59.62 -0.34 -11.76 16 7 C 0.22 3.89 6.66 -83.49 -0.56 3.34 16 8 C -0.19 -2.92 9.31 -39.41 -0.37 -3.29 16 9 C -0.09 -1.39 10.04 -39.55 -0.40 -1.79 16 10 C -0.16 -2.67 10.04 -39.57 -0.40 -3.06 16 11 C -0.09 -1.70 7.97 -39.40 -0.31 -2.02 16 12 C -0.13 -2.65 5.97 -38.92 -0.23 -2.88 16 13 S -0.18 -4.07 19.76 -107.50 -2.12 -6.20 16 14 C 0.10 2.56 1.98 -27.88 -0.06 2.51 16 15 H 0.05 1.32 6.93 -51.93 -0.36 0.96 16 16 C -0.14 -3.36 8.35 37.16 0.31 -3.05 16 17 C -0.51 -13.90 8.58 -34.44 -0.30 -14.19 16 18 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 19 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 20 N -0.89 -24.47 11.40 55.43 0.63 -23.84 16 21 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 28 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 1.22 7.85 -52.48 -0.41 0.81 16 32 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 33 H 0.06 0.72 5.59 -51.93 -0.29 0.43 16 34 H 0.40 6.61 7.01 -40.82 -0.29 6.32 16 35 H 0.12 1.46 6.74 -52.49 -0.35 1.10 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.13 2.77 4.96 -52.48 -0.26 2.51 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 2.30 6.28 -51.93 -0.33 1.98 16 41 H 0.02 0.46 5.96 -51.93 -0.31 0.15 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -28.21 347.67 -10.56 -38.77 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.26 Total: 7.93 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.68 Total: -26.04 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.29 Total: -35.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.12 Total: -6.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.21 -10.56 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520455508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.368 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds