Wall clock time and date at job start Tue Mar 31 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50703 * 119.99710 * 2 1 4 4 C 1.30992 * 120.00233 * 179.97438 * 2 1 3 5 5 C 1.50701 * 120.00003 * 353.87687 * 4 2 1 6 6 N 1.46504 * 109.47250 * 233.97201 * 5 4 2 7 7 C 1.40003 * 119.99714 * 179.97438 * 6 5 4 8 8 C 1.38647 * 120.10243 * 0.02562 * 7 6 5 9 9 C 1.38282 * 120.00537 * 180.02562 * 8 7 6 10 10 C 1.38270 * 120.20259 * 359.97438 * 9 8 7 11 11 C 1.38244 * 120.20140 * 359.97438 * 10 9 8 12 12 C 1.38729 * 119.99055 * 0.02562 * 11 10 9 13 13 S 1.76200 * 120.10142 * 179.97438 * 12 11 10 14 14 C 1.81407 * 102.99751 * 5.96206 * 13 12 11 15 15 H 1.08994 * 109.47177 * 308.68701 * 14 13 12 16 16 C 1.53001 * 109.46626 * 68.69086 * 14 13 12 17 17 C 1.50705 * 109.46773 * 188.68532 * 14 13 12 18 18 H 1.08001 * 120.00266 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99654 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99960 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 119.99910 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47176 * 89.99347 * 21 19 17 23 23 H 1.48496 * 109.47176 * 209.99909 * 21 19 17 24 24 H 1.48499 * 109.47071 * 329.99682 * 21 19 17 25 25 H 1.08998 * 109.47245 * 264.98641 * 1 2 3 26 26 H 1.08998 * 109.47424 * 24.98641 * 1 2 3 27 27 H 1.09000 * 109.47083 * 144.98480 * 1 2 3 28 28 H 1.09001 * 109.46733 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47030 * 299.99807 * 3 2 1 30 30 H 1.09000 * 109.47591 * 60.00147 * 3 2 1 31 31 H 1.08005 * 120.00239 * 173.87616 * 4 2 1 32 32 H 1.09000 * 109.47091 * 113.97521 * 5 4 2 33 33 H 1.09001 * 109.47442 * 353.97775 * 5 4 2 34 34 H 0.96997 * 120.00229 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.99195 * 0.02562 * 8 7 6 36 36 H 1.07997 * 119.89963 * 180.27131 * 9 8 7 37 37 H 1.08006 * 119.90006 * 180.02562 * 10 9 8 38 38 H 1.08003 * 120.00491 * 180.02562 * 11 10 9 39 39 H 1.08991 * 109.47708 * 66.67426 * 16 14 13 40 40 H 1.09003 * 109.46605 * 186.67965 * 16 14 13 41 41 H 1.08997 * 109.47169 * 306.66976 * 16 14 13 42 42 H 0.97004 * 120.00140 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4150 -2.4357 0.1403 6 7 1.9777 -3.2048 1.2531 7 6 1.4440 -4.4575 1.5788 8 6 0.3834 -4.9725 0.8492 9 6 -0.1425 -6.2097 1.1730 10 6 0.3865 -6.9372 2.2231 11 6 1.4447 -6.4323 2.9555 12 6 1.9786 -5.1919 2.6378 13 16 3.3269 -4.5452 3.5698 14 6 3.7551 -5.9187 4.6747 15 1 2.8578 -6.2671 5.1860 16 6 4.3531 -7.0645 3.8558 17 6 4.7628 -5.4493 5.6923 18 1 5.1105 -4.4269 5.6762 19 6 5.2409 -6.3252 6.6438 20 7 4.8171 -7.5700 6.6637 21 14 6.4894 -5.7433 7.9056 22 1 5.7790 -5.2218 9.1008 23 1 7.3583 -6.8800 8.3028 24 1 7.3233 -4.6652 7.3160 25 1 -0.3633 -0.0898 1.0237 26 1 -0.3634 0.9314 -0.4341 27 1 -0.3633 -0.8417 -0.5897 28 1 3.3321 1.1060 0.0005 29 1 1.9971 1.8767 -0.8900 30 1 1.9971 1.8768 0.8900 31 1 3.2374 -1.1371 -0.0993 32 1 1.5087 -3.0094 -0.7818 33 1 0.3622 -2.2313 0.3355 34 1 2.7194 -2.8457 1.7647 35 1 -0.0320 -4.4072 0.0281 36 1 -0.9658 -6.6112 0.6008 37 1 -0.0277 -7.9032 2.4715 38 1 1.8557 -7.0034 3.7749 39 1 5.3115 -6.7530 3.4407 40 1 4.5004 -7.9323 4.4989 41 1 3.6731 -7.3247 3.0447 42 1 5.1531 -8.1861 7.3334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520455508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:31 Heat of formation + Delta-G solvation = 13.501758 kcal Electronic energy + Delta-G solvation = -20261.430308 eV Core-core repulsion = 17331.612699 eV Total energy + Delta-G solvation = -2929.817609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25078 -38.14695 -36.25678 -35.60736 -32.76869 -31.63415 -30.97187 -28.84391 -28.23392 -27.38226 -25.11440 -23.65002 -23.27408 -22.19665 -19.46147 -18.73060 -17.99809 -17.42293 -17.24669 -16.66651 -16.10799 -15.79382 -15.37468 -15.05077 -15.02335 -14.65734 -14.60642 -14.33571 -14.17386 -13.73310 -13.48664 -13.21164 -13.15561 -12.90566 -12.87879 -12.79571 -12.49337 -12.43181 -12.35798 -12.16054 -11.83755 -11.57034 -11.33581 -11.00851 -10.78094 -10.51609 -10.36859 -9.74096 -8.76346 -8.25103 -7.80945 -6.41328 0.45513 0.72659 0.95917 1.10687 1.40571 1.40898 1.52652 1.96928 2.37412 2.75537 2.95734 3.04671 3.79090 4.00846 4.02772 4.26552 4.32164 4.47751 4.49971 4.57101 4.59523 4.62136 4.70111 4.77802 4.80985 4.82362 4.84815 4.93122 4.97066 5.04884 5.11769 5.16805 5.30637 5.32959 5.51424 5.57047 5.69067 5.71557 5.74868 5.90405 5.99917 6.01308 6.48108 6.60894 6.74685 7.25819 8.81287 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.004089 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.932001 B = 6846.294582 C = 8402.187065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C -0.121 4.121 4 C -0.204 4.204 5 C 0.156 3.844 6 N -0.744 5.744 7 C 0.219 3.781 8 C -0.188 4.188 9 C -0.076 4.076 10 C -0.170 4.170 11 C -0.106 4.106 12 C -0.165 4.165 13 S -0.193 6.193 14 C 0.102 3.898 15 H 0.020 0.980 16 C -0.121 4.121 17 C -0.534 4.534 18 H 0.057 0.943 19 C 0.026 3.974 20 N -0.910 5.910 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.269 1.269 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.396 0.604 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 10.803 -15.090 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C -0.178 4.178 4 C -0.222 4.222 5 C 0.034 3.966 6 N -0.374 5.374 7 C 0.110 3.890 8 C -0.213 4.213 9 C -0.097 4.097 10 C -0.191 4.191 11 C -0.131 4.131 12 C -0.282 4.282 13 S 0.051 5.949 14 C -0.026 4.026 15 H 0.038 0.962 16 C -0.180 4.180 17 C -0.573 4.573 18 H 0.075 0.925 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.193 1.193 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.583 11.846 -15.164 21.496 hybrid contribution 0.688 -1.208 1.325 1.920 sum -8.895 10.637 -13.839 19.591 Atomic orbital electron populations 1.20972 0.91233 1.03623 1.02516 1.21969 0.96854 0.95186 0.96552 1.20932 0.99393 0.94386 1.03081 1.22642 0.99887 0.93391 1.06300 1.20429 0.97272 0.89957 0.88955 1.44911 1.38898 1.16922 1.36649 1.17556 0.93394 0.86073 0.91940 1.20821 0.98586 0.98672 1.03175 1.21230 0.99159 0.93345 0.95966 1.21058 0.98010 1.01652 0.98399 1.21166 0.97503 0.94449 0.99948 1.21413 1.03867 1.00137 1.02801 1.84617 1.37355 1.29148 1.43767 1.20740 0.97982 0.90925 0.92945 0.96178 1.21874 0.98606 0.99920 0.97644 1.20903 1.25224 0.97379 1.13802 0.92455 1.25701 0.98123 0.94740 0.98979 1.69993 1.44278 1.04913 1.35625 0.85385 0.78522 0.78118 0.78659 1.19754 1.20081 1.19339 0.91560 0.90177 0.90721 0.92186 0.90087 0.90708 0.87353 0.91419 0.90562 0.76858 0.83401 0.82568 0.84716 0.87710 0.94897 0.91273 0.94691 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.92 71.23 0.64 -1.11 16 2 C -0.10 -1.78 6.05 -16.48 -0.10 -1.88 16 3 C -0.12 -1.69 10.09 71.24 0.72 -0.97 16 4 C -0.20 -4.13 9.23 25.66 0.24 -3.89 16 5 C 0.16 3.42 4.95 85.63 0.42 3.84 16 6 N -0.74 -22.30 5.68 -342.53 -1.94 -24.25 16 7 C 0.22 7.40 6.66 38.24 0.25 7.65 16 8 C -0.19 -5.11 9.31 22.38 0.21 -4.91 16 9 C -0.08 -1.96 10.04 22.29 0.22 -1.74 16 10 C -0.17 -5.31 10.04 22.28 0.22 -5.08 16 11 C -0.11 -4.21 7.97 22.39 0.18 -4.03 16 12 C -0.17 -6.72 5.97 22.70 0.14 -6.58 16 13 S -0.19 -8.89 19.76 -56.49 -1.12 -10.01 16 14 C 0.10 5.41 1.98 29.85 0.06 5.47 16 15 H 0.02 1.16 6.93 -2.39 -0.02 1.15 16 16 C -0.12 -6.12 8.35 71.98 0.60 -5.52 16 17 C -0.53 -30.25 8.58 25.60 0.22 -30.03 16 18 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 19 C 0.03 1.45 5.30 84.66 0.45 1.90 16 20 N -0.91 -51.71 11.40 21.45 0.24 -51.46 16 21 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 27 H 0.07 0.93 6.70 -2.39 -0.02 0.92 16 28 H 0.06 0.88 7.79 -2.39 -0.02 0.86 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 2.29 7.85 -2.91 -0.02 2.26 16 32 H 0.07 1.37 7.95 -2.39 -0.02 1.35 16 33 H 0.08 1.49 5.59 -2.39 -0.01 1.47 16 34 H 0.40 13.06 7.01 -92.71 -0.65 12.41 16 35 H 0.15 3.04 6.74 -2.91 -0.02 3.02 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.10 4.66 4.96 -2.91 -0.01 4.65 16 39 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 3.75 6.28 -2.39 -0.01 3.73 16 41 H 0.03 1.61 5.96 -2.39 -0.01 1.60 16 42 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.90 347.67 4.04 -58.86 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.36 Total: 28.21 kcal Atomic # 6 Polarization: -51.35 SS G_CDS: 4.47 Total: -46.88 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.70 Total: -75.71 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.12 Total: -10.01 kcal Total: -62.90 4.04 -58.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520455508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.358 kcal (2) G-P(sol) polarization free energy of solvation -62.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds