Wall clock time and date at job start Tue Mar 31 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47340 * 90.00025 * 3 2 1 5 5 H 1.48504 * 109.47003 * 210.00297 * 3 2 1 6 6 H 1.48505 * 109.47024 * 329.99705 * 3 2 1 7 7 C 1.37878 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00056 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00102 * 90.00333 * 10 9 7 12 12 C 1.52995 * 109.47144 * 85.40456 * 11 10 9 13 13 C 1.53004 * 117.49916 * 244.30593 * 12 11 10 14 14 C 1.53004 * 117.50046 * 175.64850 * 12 11 10 15 15 C 1.34782 * 119.99939 * 270.00114 * 10 9 7 16 16 O 1.21283 * 119.99738 * 185.00700 * 15 10 9 17 17 C 1.50702 * 120.00122 * 5.00922 * 15 10 9 18 18 H 1.09001 * 110.36872 * 305.34326 * 17 15 10 19 19 C 1.54612 * 110.41094 * 67.69555 * 17 15 10 20 20 C 1.55984 * 104.46083 * 118.44772 * 19 17 15 21 21 H 1.08997 * 116.07461 * 161.71190 * 20 19 17 22 22 C 1.55957 * 104.30657 * 290.79186 * 20 19 17 23 23 C 1.52169 * 104.87296 * 70.38366 * 22 20 19 24 24 O 1.20764 * 127.33353 * 179.74045 * 23 22 20 25 25 C 1.53530 * 105.34117 * 359.69455 * 23 22 20 26 26 H 1.08996 * 115.84225 * 161.08213 * 25 23 22 27 27 C 1.56929 * 100.84082 * 34.04564 * 25 23 22 28 28 H 0.97001 * 119.99916 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47324 * 300.00774 * 9 7 2 30 30 H 1.09007 * 109.46613 * 60.00310 * 9 7 2 31 31 H 1.08999 * 109.47012 * 205.40067 * 11 10 9 32 32 H 1.08997 * 109.47274 * 325.40378 * 11 10 9 33 33 H 1.09004 * 115.55352 * 29.97514 * 12 11 10 34 34 H 1.09005 * 117.49776 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.50053 * 145.02015 * 13 12 11 36 36 H 1.09004 * 117.49835 * 214.97804 * 14 12 11 37 37 H 1.09002 * 117.49439 * 359.97438 * 14 12 11 38 38 H 1.08998 * 110.43586 * 237.18892 * 19 17 15 39 39 H 1.08999 * 110.44189 * 359.70472 * 19 17 15 40 40 H 1.09003 * 110.35460 * 189.23062 * 22 20 19 41 41 H 1.09003 * 110.36084 * 311.53177 * 22 20 19 42 42 H 1.08998 * 112.08515 * 189.94670 * 27 25 23 43 43 H 1.08995 * 112.08931 * 63.25486 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 4.2436 -3.2661 -1.2686 12 6 5.6506 -2.9330 -1.7685 13 6 5.7683 -2.1562 -3.0815 14 6 6.1366 -3.6413 -3.0347 15 6 4.2249 -3.2103 1.1674 16 8 4.7144 -4.3200 1.1694 17 6 3.8682 -2.5417 2.4700 18 1 4.3455 -1.5641 2.5378 19 6 2.3340 -2.4031 2.6026 20 6 1.9756 -3.2382 3.8704 21 1 1.0057 -3.0307 4.3223 22 6 2.2317 -4.7162 3.4434 23 6 3.7443 -4.8320 3.3249 24 8 4.3823 -5.8110 3.0199 25 6 4.2870 -3.4389 3.6744 26 1 5.3391 -3.3958 3.9560 27 6 3.2465 -2.9796 4.7556 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6808 -0.8904 30 1 3.8751 -0.6797 0.8896 31 1 4.1565 -4.3423 -1.1188 32 1 3.5096 -2.9414 -2.0060 33 1 6.3883 -2.7256 -0.9933 34 1 4.8433 -1.8829 -3.5893 35 1 6.5836 -1.4382 -3.1701 36 1 7.1940 -3.8996 -3.0925 37 1 5.4540 -4.3449 -3.5112 38 1 2.0571 -1.3585 2.7442 39 1 1.8373 -2.8138 1.7235 40 1 1.8574 -5.4010 4.2045 41 1 1.7592 -4.9207 2.4827 42 1 3.3599 -1.9263 5.0120 43 1 3.2663 -3.6162 5.6401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520984109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:21 Heat of formation + Delta-G solvation = -35.369763 kcal Electronic energy + Delta-G solvation = -24897.339893 eV Core-core repulsion = 21522.650184 eV Total energy + Delta-G solvation = -3374.689709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.94154 -38.64299 -37.04414 -36.69196 -34.83906 -32.50695 -30.32051 -28.74030 -28.08889 -27.05188 -25.96376 -22.67319 -22.11750 -21.85601 -20.37441 -19.92319 -18.92059 -17.74132 -17.07510 -16.39275 -16.12872 -15.97797 -15.21840 -14.92155 -14.46645 -14.21672 -13.90193 -13.42442 -13.18749 -13.03711 -12.73560 -12.41020 -12.19373 -12.14733 -11.84672 -11.56170 -11.43297 -11.29529 -11.22819 -11.03421 -10.97920 -10.73631 -10.66995 -10.42698 -10.34540 -10.17774 -10.04547 -9.64399 -9.50574 -8.98347 -8.79959 -8.70774 -7.79755 -6.26215 -4.25915 2.59829 3.12395 3.21894 3.23969 3.27353 3.68699 4.10161 4.22153 4.45462 4.67803 4.78004 4.96063 5.01742 5.05032 5.14899 5.22849 5.32454 5.38029 5.46254 5.60396 5.68919 5.71015 5.77105 5.79704 5.91523 5.96257 6.07138 6.09420 6.11797 6.13952 6.20525 6.29822 6.30698 6.41169 6.45160 6.55667 6.66120 6.72488 7.01722 7.30611 7.40534 8.06813 8.17003 8.36022 8.75661 8.88555 9.33143 10.85599 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.008445 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.428062 B = 3314.736413 C = 5234.259631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.865 3.135 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.586 5.586 11 C 0.150 3.850 12 C -0.157 4.157 13 C -0.181 4.181 14 C -0.179 4.179 15 C 0.510 3.490 16 O -0.550 6.550 17 C -0.098 4.098 18 H 0.101 0.899 19 C -0.098 4.098 20 C -0.101 4.101 21 H 0.109 0.891 22 C -0.180 4.180 23 C 0.382 3.618 24 O -0.430 6.430 25 C -0.139 4.139 26 H 0.108 0.892 27 C -0.119 4.119 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -1.925 4.146 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.099 0.901 9 C 0.087 3.913 10 N -0.315 5.315 11 C 0.027 3.973 12 C -0.177 4.177 13 C -0.218 4.218 14 C -0.216 4.216 15 C 0.298 3.702 16 O -0.429 6.429 17 C -0.119 4.119 18 H 0.119 0.881 19 C -0.136 4.136 20 C -0.119 4.119 21 H 0.127 0.873 22 C -0.218 4.218 23 C 0.255 3.745 24 O -0.300 6.300 25 C -0.159 4.159 26 H 0.126 0.874 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.531 -2.894 3.938 8.157 hybrid contribution 0.343 1.347 -0.217 1.407 sum 6.874 -1.547 3.721 7.968 Atomic orbital electron populations 1.69876 1.06098 1.27135 1.49483 1.24806 0.94632 0.98596 0.94435 0.87021 0.80581 0.84325 0.78915 1.19875 1.18940 1.21000 1.21334 0.88839 0.94845 1.52180 0.90074 1.19831 0.95972 0.78006 0.97531 1.47830 1.63645 1.15678 1.04360 1.20867 0.92989 0.97621 0.85842 1.22759 0.99400 1.04323 0.91197 1.23051 1.03187 0.94099 1.01433 1.22895 1.01404 0.95341 1.01997 1.20591 0.77834 0.85880 0.85848 1.90761 1.44950 1.20056 1.87182 1.22256 0.99649 0.99207 0.90769 0.88146 1.22833 0.91267 1.01819 0.97646 1.23652 0.97972 0.93589 0.96660 0.87267 1.23191 0.96492 0.98570 1.03508 1.24981 0.90982 0.88099 0.70445 1.90333 1.67739 1.37225 1.34741 1.24062 1.00011 0.95995 0.95823 0.87415 1.23521 0.94282 1.01595 0.96196 0.92393 0.94743 0.95449 0.90299 0.90181 0.88193 0.88531 0.89344 0.89231 0.88848 0.89611 0.88684 0.89350 0.88835 0.89990 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 13.96 55.43 0.77 -23.29 16 2 C 0.08 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.86 18.79 27.47 -169.99 -4.67 14.12 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -12.75 7.32 -34.44 -0.25 -13.00 16 8 H 0.08 2.17 6.92 -52.49 -0.36 1.81 16 9 C 0.21 4.33 3.89 -5.20 -0.02 4.31 16 10 N -0.59 -11.60 2.46 -175.07 -0.43 -12.03 16 11 C 0.15 2.74 5.70 -4.05 -0.02 2.72 16 12 C -0.16 -2.52 6.01 -90.62 -0.54 -3.07 16 13 C -0.18 -2.51 10.18 -26.69 -0.27 -2.78 16 14 C -0.18 -2.39 10.25 -26.69 -0.27 -2.67 16 15 C 0.51 10.21 6.45 -10.98 -0.07 10.14 16 16 O -0.55 -12.39 12.50 -17.64 -0.22 -12.61 16 17 C -0.10 -1.67 2.20 -89.36 -0.20 -1.86 16 18 H 0.10 1.61 7.00 -51.93 -0.36 1.24 16 19 C -0.10 -1.68 3.96 -24.29 -0.10 -1.78 16 20 C -0.10 -1.39 5.25 -85.26 -0.45 -1.84 16 21 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 22 C -0.18 -2.71 6.10 -25.57 -0.16 -2.87 16 23 C 0.38 6.83 5.18 -26.88 -0.14 6.69 16 24 O -0.43 -9.28 16.40 -17.20 -0.28 -9.57 16 25 C -0.14 -2.15 4.68 -86.66 -0.41 -2.55 16 26 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 27 C -0.12 -1.46 6.45 -22.42 -0.14 -1.60 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 30 H 0.03 0.55 5.78 -51.93 -0.30 0.25 16 31 H 0.08 1.51 7.36 -51.93 -0.38 1.13 16 32 H 0.08 1.45 7.84 -51.93 -0.41 1.05 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.10 1.34 8.03 -51.93 -0.42 0.93 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.54 7.99 -51.93 -0.41 1.13 16 39 H 0.09 1.93 5.23 -51.93 -0.27 1.66 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.54 7.84 -51.93 -0.41 1.14 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -29.35 335.34 -9.58 -38.93 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.67 Total: 7.70 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.14 Total: -8.30 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.34 Total: -35.32 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.50 Total: -22.18 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.67 Total: 14.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.35 -9.58 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520984109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.560 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds