Wall clock time and date at job start Tue Mar 31 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47340 * 90.00025 * 3 2 1 5 5 H 1.48504 * 109.47003 * 210.00297 * 3 2 1 6 6 H 1.48505 * 109.47024 * 329.99705 * 3 2 1 7 7 C 1.37878 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00056 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00102 * 90.00333 * 10 9 7 12 12 C 1.52995 * 109.47144 * 85.40456 * 11 10 9 13 13 C 1.53004 * 117.49916 * 244.30593 * 12 11 10 14 14 C 1.53004 * 117.50046 * 175.64850 * 12 11 10 15 15 C 1.34782 * 119.99939 * 270.00114 * 10 9 7 16 16 O 1.21283 * 119.99738 * 185.00700 * 15 10 9 17 17 C 1.50702 * 120.00122 * 5.00922 * 15 10 9 18 18 H 1.09001 * 110.36872 * 305.34326 * 17 15 10 19 19 C 1.54612 * 110.41094 * 67.69555 * 17 15 10 20 20 C 1.55984 * 104.46083 * 118.44772 * 19 17 15 21 21 H 1.08997 * 116.07461 * 161.71190 * 20 19 17 22 22 C 1.55957 * 104.30657 * 290.79186 * 20 19 17 23 23 C 1.52169 * 104.87296 * 70.38366 * 22 20 19 24 24 O 1.20764 * 127.33353 * 179.74045 * 23 22 20 25 25 C 1.53530 * 105.34117 * 359.69455 * 23 22 20 26 26 H 1.08996 * 115.84225 * 161.08213 * 25 23 22 27 27 C 1.56929 * 100.84082 * 34.04564 * 25 23 22 28 28 H 0.97001 * 119.99916 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47324 * 300.00774 * 9 7 2 30 30 H 1.09007 * 109.46613 * 60.00310 * 9 7 2 31 31 H 1.08999 * 109.47012 * 205.40067 * 11 10 9 32 32 H 1.08997 * 109.47274 * 325.40378 * 11 10 9 33 33 H 1.09004 * 115.55352 * 29.97514 * 12 11 10 34 34 H 1.09005 * 117.49776 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.50053 * 145.02015 * 13 12 11 36 36 H 1.09004 * 117.49835 * 214.97804 * 14 12 11 37 37 H 1.09002 * 117.49439 * 359.97438 * 14 12 11 38 38 H 1.08998 * 110.43586 * 237.18892 * 19 17 15 39 39 H 1.08999 * 110.44189 * 359.70472 * 19 17 15 40 40 H 1.09003 * 110.35460 * 189.23062 * 22 20 19 41 41 H 1.09003 * 110.36084 * 311.53177 * 22 20 19 42 42 H 1.08998 * 112.08515 * 189.94670 * 27 25 23 43 43 H 1.08995 * 112.08931 * 63.25486 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 4.2436 -3.2661 -1.2686 12 6 5.6506 -2.9330 -1.7685 13 6 5.7683 -2.1562 -3.0815 14 6 6.1366 -3.6413 -3.0347 15 6 4.2249 -3.2103 1.1674 16 8 4.7144 -4.3200 1.1694 17 6 3.8682 -2.5417 2.4700 18 1 4.3455 -1.5641 2.5378 19 6 2.3340 -2.4031 2.6026 20 6 1.9756 -3.2382 3.8704 21 1 1.0057 -3.0307 4.3223 22 6 2.2317 -4.7162 3.4434 23 6 3.7443 -4.8320 3.3249 24 8 4.3823 -5.8110 3.0199 25 6 4.2870 -3.4389 3.6744 26 1 5.3391 -3.3958 3.9560 27 6 3.2465 -2.9796 4.7556 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6808 -0.8904 30 1 3.8751 -0.6797 0.8896 31 1 4.1565 -4.3423 -1.1188 32 1 3.5096 -2.9414 -2.0060 33 1 6.3883 -2.7256 -0.9933 34 1 4.8433 -1.8829 -3.5893 35 1 6.5836 -1.4382 -3.1701 36 1 7.1940 -3.8996 -3.0925 37 1 5.4540 -4.3449 -3.5112 38 1 2.0571 -1.3585 2.7442 39 1 1.8373 -2.8138 1.7235 40 1 1.8574 -5.4010 4.2045 41 1 1.7592 -4.9207 2.4827 42 1 3.3599 -1.9263 5.0120 43 1 3.2663 -3.6162 5.6401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520984109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:15 Heat of formation + Delta-G solvation = -49.967014 kcal Electronic energy + Delta-G solvation = -24897.972877 eV Core-core repulsion = 21522.650184 eV Total energy + Delta-G solvation = -3375.322693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.32906 -40.13149 -38.41640 -38.08943 -36.47745 -34.38717 -31.68375 -30.26304 -29.58112 -28.41491 -27.33931 -24.44447 -23.26601 -23.22053 -21.69452 -21.11094 -20.36838 -19.33304 -18.81656 -17.85526 -17.62637 -17.37766 -16.55087 -16.41923 -16.00724 -15.69179 -15.38889 -14.81865 -14.65954 -14.46498 -14.40540 -13.89355 -13.67677 -13.51812 -13.44622 -12.95867 -12.90621 -12.62513 -12.45609 -12.39405 -12.35782 -12.23102 -12.01972 -11.94069 -11.78324 -11.42279 -11.34944 -11.28418 -10.89077 -10.70058 -10.53139 -10.13601 -9.45164 -8.20584 -6.24190 1.20070 1.42285 1.46979 1.53451 1.68319 2.19895 2.39803 2.89822 3.12464 3.18033 3.48681 3.50423 3.68042 3.81342 3.88002 4.01518 4.05899 4.12546 4.20764 4.30549 4.33797 4.39957 4.49874 4.67334 4.70721 4.74705 4.78632 4.79654 4.85592 4.92525 4.96932 4.98869 5.11396 5.19162 5.20880 5.21541 5.22843 5.37766 5.50530 5.55647 5.71552 6.25291 6.61583 6.77458 6.78502 7.25775 7.39922 8.94320 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.008445 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.428062 B = 3314.736413 C = 5234.259631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.031 3.969 3 Si 0.924 3.076 4 H -0.258 1.258 5 H -0.248 1.248 6 H -0.292 1.292 7 C -0.519 4.519 8 H 0.039 0.961 9 C 0.217 3.783 10 N -0.590 5.590 11 C 0.151 3.849 12 C -0.179 4.179 13 C -0.169 4.169 14 C -0.163 4.163 15 C 0.502 3.498 16 O -0.579 6.579 17 C -0.098 4.098 18 H 0.118 0.882 19 C -0.095 4.095 20 C -0.089 4.089 21 H 0.134 0.866 22 C -0.180 4.180 23 C 0.371 3.629 24 O -0.477 6.477 25 C -0.138 4.138 26 H 0.118 0.882 27 C -0.099 4.099 28 H 0.266 0.734 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -0.249 5.448 9.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.182 1.182 5 H -0.172 1.172 6 H -0.218 1.218 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.096 3.904 10 N -0.319 5.319 11 C 0.028 3.972 12 C -0.199 4.199 13 C -0.206 4.206 14 C -0.201 4.201 15 C 0.292 3.708 16 O -0.461 6.461 17 C -0.119 4.119 18 H 0.136 0.864 19 C -0.133 4.133 20 C -0.107 4.107 21 H 0.152 0.848 22 C -0.217 4.217 23 C 0.248 3.752 24 O -0.351 6.351 25 C -0.158 4.158 26 H 0.136 0.864 27 C -0.136 4.136 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.982 -1.210 5.239 9.624 hybrid contribution -0.168 0.716 -0.699 1.015 sum 7.814 -0.494 4.540 9.051 Atomic orbital electron populations 1.70022 1.07990 1.27960 1.51581 1.25510 0.95163 1.02015 0.94176 0.86061 0.79694 0.79661 0.79755 1.18220 1.17176 1.21831 1.21321 0.90332 0.93165 1.50961 0.94252 1.19673 0.93729 0.78722 0.98296 1.47912 1.63384 1.15489 1.05090 1.20854 0.94681 0.96380 0.85311 1.22554 0.97536 1.07621 0.92148 1.23118 1.03710 0.94805 0.98927 1.23011 1.02505 0.95330 0.99230 1.21187 0.77150 0.85627 0.86839 1.90753 1.46325 1.21324 1.87678 1.22340 0.99654 1.00088 0.89791 0.86402 1.22671 0.91031 1.01644 0.97964 1.23702 1.00149 0.91384 0.95420 0.84799 1.23218 0.94681 1.00523 1.03290 1.25653 0.92312 0.88461 0.68807 1.90305 1.68955 1.39017 1.36807 1.24154 1.01557 0.93789 0.96253 0.86408 1.23538 0.90940 1.03529 0.95564 0.92502 0.94328 0.93710 0.92204 0.90779 0.89221 0.88640 0.87610 0.87449 0.88306 0.90318 0.92754 0.86448 0.91239 0.87664 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.78 13.96 21.45 0.30 -51.48 16 2 C 0.03 1.54 5.47 84.66 0.46 2.00 16 3 Si 0.92 37.61 27.47 68.60 1.88 39.49 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.25 -9.36 6.54 99.48 0.65 -8.71 16 6 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.52 -25.31 7.32 25.60 0.19 -25.12 16 8 H 0.04 2.23 6.92 -2.91 -0.02 2.21 16 9 C 0.22 8.94 3.89 85.63 0.33 9.28 16 10 N -0.59 -23.82 2.46 -826.18 -2.03 -25.85 16 11 C 0.15 5.68 5.70 86.38 0.49 6.18 16 12 C -0.18 -5.68 6.01 -10.79 -0.06 -5.74 16 13 C -0.17 -4.39 10.18 30.62 0.31 -4.08 16 14 C -0.16 -4.13 10.25 30.62 0.31 -3.82 16 15 C 0.50 20.47 6.45 87.66 0.57 21.04 16 16 O -0.58 -26.99 12.50 19.14 0.24 -26.75 16 17 C -0.10 -3.25 2.20 -9.98 -0.02 -3.27 16 18 H 0.12 3.50 7.00 -2.39 -0.02 3.48 16 19 C -0.10 -3.23 3.96 32.18 0.13 -3.11 16 20 C -0.09 -2.26 5.25 -7.32 -0.04 -2.30 16 21 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 22 C -0.18 -5.31 6.10 31.34 0.19 -5.12 16 23 C 0.37 13.22 5.18 30.50 0.16 13.37 16 24 O -0.48 -21.11 16.40 20.71 0.34 -20.77 16 25 C -0.14 -4.00 4.68 -8.23 -0.04 -4.04 16 26 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 27 C -0.10 -2.04 6.45 33.39 0.22 -1.83 16 28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.04 1.58 7.13 -2.39 -0.02 1.56 16 30 H 0.05 1.71 5.78 -2.38 -0.01 1.70 16 31 H 0.06 2.43 7.36 -2.39 -0.02 2.42 16 32 H 0.07 2.80 7.84 -2.39 -0.02 2.78 16 33 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 34 H 0.10 2.51 8.03 -2.38 -0.02 2.49 16 35 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.11 2.35 8.14 -2.38 -0.02 2.34 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 2.76 7.99 -2.39 -0.02 2.74 16 39 H 0.05 2.30 5.23 -2.39 -0.01 2.29 16 40 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 2.41 7.84 -2.39 -0.02 2.39 16 42 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -66.74 335.34 4.87 -61.86 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.95 Total: 30.03 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 3.20 Total: -6.54 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.73 Total: -77.33 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: 0.58 Total: -47.52 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.88 Total: 39.49 kcal Total: -66.74 4.87 -61.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520984109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.897 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds