Wall clock time and date at job start Tue Mar 31 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86809 * 119.99809 * 2 1 4 4 H 1.48497 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 300.00219 * 3 2 1 6 6 H 1.48498 * 109.46921 * 60.00295 * 3 2 1 7 7 C 1.37876 * 120.00629 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99410 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99902 * 270.00180 * 10 9 7 12 12 C 1.53003 * 109.46907 * 267.00139 * 11 10 9 13 13 C 1.52998 * 117.49876 * 245.38163 * 12 11 10 14 14 C 1.52994 * 117.49868 * 176.71615 * 12 11 10 15 15 C 1.34774 * 119.99719 * 89.99683 * 10 9 7 16 16 O 1.21284 * 119.99645 * 185.26020 * 15 10 9 17 17 C 1.50694 * 120.00053 * 4.99031 * 15 10 9 18 18 H 1.08997 * 110.37176 * 34.48020 * 17 15 10 19 19 C 1.54613 * 110.41299 * 272.12591 * 17 15 10 20 20 C 1.56249 * 104.33736 * 240.92596 * 19 17 15 21 21 H 1.09000 * 116.70299 * 161.21144 * 20 19 17 22 22 C 1.55964 * 104.26347 * 290.70882 * 20 19 17 23 23 C 1.52170 * 104.87124 * 70.42642 * 22 20 19 24 24 O 1.20759 * 127.32687 * 179.70378 * 23 22 20 25 25 C 1.53518 * 105.34217 * 359.69596 * 23 22 20 26 26 H 1.09003 * 115.84041 * 161.08154 * 25 23 22 27 27 C 1.56930 * 100.84395 * 34.04468 * 25 23 22 28 28 H 0.96996 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47215 * 60.00332 * 9 7 2 30 30 H 1.08996 * 109.47196 * 299.99951 * 9 7 2 31 31 H 1.08995 * 109.47287 * 27.00009 * 11 10 9 32 32 H 1.08997 * 109.47100 * 147.00603 * 11 10 9 33 33 H 1.08995 * 115.54939 * 31.04845 * 12 11 10 34 34 H 1.09001 * 117.49980 * 359.97438 * 13 12 11 35 35 H 1.08993 * 117.50370 * 145.02527 * 13 12 11 36 36 H 1.08996 * 117.50287 * 214.98118 * 14 12 11 37 37 H 1.09006 * 117.49942 * 359.97438 * 14 12 11 38 38 H 1.09010 * 110.43408 * 359.64412 * 19 17 15 39 39 H 1.08997 * 110.43724 * 122.14537 * 19 17 15 40 40 H 1.09005 * 110.35585 * 311.58031 * 22 20 19 41 41 H 1.08997 * 110.35951 * 189.27772 * 22 20 19 42 42 H 1.09002 * 112.08521 * 63.25090 * 27 25 23 43 43 H 1.09000 * 112.08958 * 189.93997 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 2.6783 -4.1688 -1.2711 12 6 1.7913 -5.3482 -1.6749 13 6 2.4349 -6.7357 -1.7131 14 6 2.0786 -6.0206 -3.0188 15 6 2.6421 -4.1252 1.1649 16 8 3.5010 -4.9816 1.1660 17 6 2.0700 -3.6301 2.4681 18 1 1.0149 -3.3833 2.3499 19 6 2.8589 -2.3988 2.9701 20 6 3.4403 -2.8477 4.3492 21 1 4.2781 -2.2696 4.7391 22 6 2.1907 -2.9558 5.2762 23 6 1.4316 -4.1729 4.7680 24 8 0.4001 -4.6264 5.2023 25 6 2.2561 -4.7013 3.5857 26 1 2.0597 -5.7327 3.2929 27 6 3.7117 -4.3686 4.0687 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5570 0.8896 31 1 2.6351 -3.4006 -2.0432 32 1 3.7069 -4.5106 -1.1558 33 1 0.7509 -5.2847 -1.3562 34 1 3.4904 -6.8082 -1.4509 35 1 1.8179 -7.5850 -1.4200 36 1 1.2273 -6.3998 -3.5841 37 1 2.8993 -5.6224 -3.6156 38 1 3.6647 -2.1549 2.2777 39 1 2.1927 -1.5453 3.0958 40 1 1.5748 -2.0608 5.1883 41 1 2.4981 -3.1055 6.3111 42 1 3.9766 -4.9117 4.9759 43 1 4.4489 -4.5146 3.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520984110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:26 Heat of formation + Delta-G solvation = -45.739741 kcal Electronic energy + Delta-G solvation = -24443.275432 eV Core-core repulsion = 21068.136047 eV Total energy + Delta-G solvation = -3375.139385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89826 -38.88533 -37.35241 -36.54791 -34.75174 -32.51142 -30.40029 -28.63759 -27.76510 -26.97885 -25.97230 -23.07370 -22.25327 -22.03156 -20.28792 -20.05197 -18.71830 -17.91595 -16.76876 -16.57305 -16.22364 -15.60098 -15.35332 -14.67691 -14.58043 -14.38567 -14.13807 -13.84596 -13.39579 -13.09204 -12.69849 -12.51535 -12.39798 -12.01582 -11.63396 -11.44350 -11.36407 -11.27741 -11.21766 -10.96104 -10.95368 -10.76055 -10.63775 -10.48084 -10.34960 -10.22519 -10.09134 -9.71719 -9.59258 -9.32023 -8.86205 -8.56838 -7.75210 -6.21981 -4.29059 2.07607 3.17526 3.26874 3.29066 3.36199 3.78135 4.12888 4.24242 4.32150 4.56908 4.69092 4.86351 5.05875 5.11121 5.18646 5.22623 5.25889 5.28857 5.42444 5.51580 5.56472 5.75729 5.80829 5.82949 5.83786 5.88810 5.99700 6.10979 6.13243 6.16071 6.22334 6.29296 6.35281 6.37307 6.52733 6.57776 6.64602 6.78513 7.15217 7.50534 7.65140 7.72949 8.01739 8.31156 8.75783 8.99076 9.38602 10.84734 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.008218 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.637504 B = 3406.296626 C = 5622.043037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.235 3.765 10 N -0.592 5.592 11 C 0.151 3.849 12 C -0.161 4.161 13 C -0.174 4.174 14 C -0.181 4.181 15 C 0.530 3.470 16 O -0.567 6.567 17 C -0.096 4.096 18 H 0.098 0.902 19 C -0.096 4.096 20 C -0.101 4.101 21 H 0.110 0.890 22 C -0.178 4.178 23 C 0.370 3.630 24 O -0.450 6.450 25 C -0.133 4.133 26 H 0.113 0.887 27 C -0.115 4.115 28 H 0.265 0.735 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -6.337 3.692 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.115 3.885 10 N -0.321 5.321 11 C 0.027 3.973 12 C -0.180 4.180 13 C -0.211 4.211 14 C -0.218 4.218 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.117 4.117 18 H 0.116 0.884 19 C -0.134 4.134 20 C -0.119 4.119 21 H 0.128 0.872 22 C -0.216 4.216 23 C 0.245 3.755 24 O -0.323 6.323 25 C -0.152 4.152 26 H 0.131 0.869 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.015 -6.859 3.897 9.348 hybrid contribution 0.141 1.144 -0.209 1.172 sum 5.156 -5.715 3.688 8.535 Atomic orbital electron populations 1.69931 1.05984 1.27180 1.49752 1.24922 0.94786 0.99166 0.94859 0.86523 0.80185 0.83490 0.77803 1.19615 1.20922 1.20819 1.21470 0.93527 0.90239 1.51800 0.92013 1.19496 0.87673 0.82676 0.98629 1.48163 1.45394 1.34405 1.04155 1.20823 0.96518 0.93663 0.86257 1.22793 1.00757 0.94236 1.00213 1.22954 1.01591 0.95597 1.00923 1.22910 1.03273 1.04899 0.90756 1.20079 0.81831 0.81085 0.85207 1.90566 1.32610 1.33889 1.87712 1.22137 1.02185 0.95462 0.91958 0.88423 1.22578 0.99902 0.95983 0.94915 1.23691 0.96097 0.96797 0.95337 0.87185 1.23186 0.98511 0.99012 1.00877 1.25658 0.83027 0.84074 0.82698 1.90376 1.21330 1.61085 1.59478 1.24026 0.96850 0.99869 0.94505 0.86908 1.23581 0.95597 0.94827 1.01219 0.92573 0.94691 0.94382 0.90002 0.90926 0.87983 0.88714 0.89577 0.89204 0.88937 0.90326 0.89762 0.88114 0.88800 0.91361 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 13.29 55.43 0.74 -22.99 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -12.97 8.95 -34.44 -0.31 -13.28 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.32 5.03 -5.19 -0.03 5.30 16 10 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 11 C 0.15 2.72 5.70 -4.04 -0.02 2.69 16 12 C -0.16 -2.57 5.99 -90.62 -0.54 -3.11 16 13 C -0.17 -2.48 10.18 -26.69 -0.27 -2.75 16 14 C -0.18 -2.38 10.25 -26.69 -0.27 -2.65 16 15 C 0.53 10.36 6.58 -10.99 -0.07 10.29 16 16 O -0.57 -11.70 14.59 5.55 0.08 -11.62 16 17 C -0.10 -1.68 1.90 -89.36 -0.17 -1.85 16 18 H 0.10 1.84 6.12 -51.93 -0.32 1.52 16 19 C -0.10 -1.55 5.43 -24.14 -0.13 -1.68 16 20 C -0.10 -1.27 5.25 -85.11 -0.45 -1.72 16 21 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 22 C -0.18 -2.21 6.10 -25.57 -0.16 -2.37 16 23 C 0.37 5.70 7.14 -26.89 -0.19 5.51 16 24 O -0.45 -8.24 17.99 6.00 0.11 -8.13 16 25 C -0.13 -2.06 4.08 -86.66 -0.35 -2.41 16 26 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 27 C -0.11 -1.54 6.27 -22.42 -0.14 -1.68 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 0.90 5.83 -51.93 -0.30 0.60 16 31 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 32 H 0.07 1.32 7.18 -51.93 -0.37 0.94 16 33 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.09 1.39 8.04 -51.93 -0.42 0.98 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.39 7.72 -51.92 -0.40 0.99 16 39 H 0.08 1.43 7.85 -51.93 -0.41 1.02 16 40 H 0.10 1.25 7.84 -51.93 -0.41 0.84 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 1.45 6.89 -51.93 -0.36 1.09 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -27.90 348.37 -9.23 -37.13 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.75 Total: 6.10 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.21 Total: -8.16 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.31 Total: -35.30 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.19 Total: -19.75 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.90 -9.23 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520984110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.605 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds