Wall clock time and date at job start Tue Mar 31 2020 07:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86809 * 119.99809 * 2 1 4 4 H 1.48497 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47125 * 300.00219 * 3 2 1 6 6 H 1.48498 * 109.46921 * 60.00295 * 3 2 1 7 7 C 1.37876 * 120.00629 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99410 * 359.97438 * 7 2 1 10 10 N 1.46508 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99902 * 270.00180 * 10 9 7 12 12 C 1.53003 * 109.46907 * 267.00139 * 11 10 9 13 13 C 1.52998 * 117.49876 * 245.38163 * 12 11 10 14 14 C 1.52994 * 117.49868 * 176.71615 * 12 11 10 15 15 C 1.34774 * 119.99719 * 89.99683 * 10 9 7 16 16 O 1.21284 * 119.99645 * 185.26020 * 15 10 9 17 17 C 1.50694 * 120.00053 * 4.99031 * 15 10 9 18 18 H 1.08997 * 110.37176 * 34.48020 * 17 15 10 19 19 C 1.54613 * 110.41299 * 272.12591 * 17 15 10 20 20 C 1.56249 * 104.33736 * 240.92596 * 19 17 15 21 21 H 1.09000 * 116.70299 * 161.21144 * 20 19 17 22 22 C 1.55964 * 104.26347 * 290.70882 * 20 19 17 23 23 C 1.52170 * 104.87124 * 70.42642 * 22 20 19 24 24 O 1.20759 * 127.32687 * 179.70378 * 23 22 20 25 25 C 1.53518 * 105.34217 * 359.69596 * 23 22 20 26 26 H 1.09003 * 115.84041 * 161.08154 * 25 23 22 27 27 C 1.56930 * 100.84395 * 34.04468 * 25 23 22 28 28 H 0.96996 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47215 * 60.00332 * 9 7 2 30 30 H 1.08996 * 109.47196 * 299.99951 * 9 7 2 31 31 H 1.08995 * 109.47287 * 27.00009 * 11 10 9 32 32 H 1.08997 * 109.47100 * 147.00603 * 11 10 9 33 33 H 1.08995 * 115.54939 * 31.04845 * 12 11 10 34 34 H 1.09001 * 117.49980 * 359.97438 * 13 12 11 35 35 H 1.08993 * 117.50370 * 145.02527 * 13 12 11 36 36 H 1.08996 * 117.50287 * 214.98118 * 14 12 11 37 37 H 1.09006 * 117.49942 * 359.97438 * 14 12 11 38 38 H 1.09010 * 110.43408 * 359.64412 * 19 17 15 39 39 H 1.08997 * 110.43724 * 122.14537 * 19 17 15 40 40 H 1.09005 * 110.35585 * 311.58031 * 22 20 19 41 41 H 1.08997 * 110.35951 * 189.27772 * 22 20 19 42 42 H 1.09002 * 112.08521 * 63.25090 * 27 25 23 43 43 H 1.09000 * 112.08958 * 189.93997 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0018 11 6 2.6783 -4.1688 -1.2711 12 6 1.7913 -5.3482 -1.6749 13 6 2.4349 -6.7357 -1.7131 14 6 2.0786 -6.0206 -3.0188 15 6 2.6421 -4.1252 1.1649 16 8 3.5010 -4.9816 1.1660 17 6 2.0700 -3.6301 2.4681 18 1 1.0149 -3.3833 2.3499 19 6 2.8589 -2.3988 2.9701 20 6 3.4403 -2.8477 4.3492 21 1 4.2781 -2.2696 4.7391 22 6 2.1907 -2.9558 5.2762 23 6 1.4316 -4.1729 4.7680 24 8 0.4001 -4.6264 5.2023 25 6 2.2561 -4.7013 3.5857 26 1 2.0597 -5.7327 3.2929 27 6 3.7117 -4.3686 4.0687 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5570 0.8896 31 1 2.6351 -3.4006 -2.0432 32 1 3.7069 -4.5106 -1.1558 33 1 0.7509 -5.2847 -1.3562 34 1 3.4904 -6.8082 -1.4509 35 1 1.8179 -7.5850 -1.4200 36 1 1.2273 -6.3998 -3.5841 37 1 2.8993 -5.6224 -3.6156 38 1 3.6647 -2.1549 2.2777 39 1 2.1927 -1.5453 3.0958 40 1 1.5748 -2.0608 5.1883 41 1 2.4981 -3.1055 6.3111 42 1 3.9766 -4.9117 4.9759 43 1 4.4489 -4.5146 3.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520984110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:25 Heat of formation + Delta-G solvation = -59.034069 kcal Electronic energy + Delta-G solvation = -24443.851917 eV Core-core repulsion = 21068.136047 eV Total energy + Delta-G solvation = -3375.715870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.21118 -40.36097 -38.64739 -37.87313 -36.44157 -34.40299 -31.69684 -29.91093 -29.47586 -28.27004 -27.39580 -24.93464 -23.58389 -23.18952 -21.60471 -21.20336 -20.08818 -19.37513 -18.42383 -18.26683 -17.63619 -17.04836 -16.58697 -16.38063 -16.00056 -15.75840 -15.53963 -15.12197 -14.67432 -14.49972 -14.30726 -14.04601 -13.75626 -13.65618 -13.32208 -12.84868 -12.68319 -12.65811 -12.57669 -12.41173 -12.36344 -12.21277 -12.06721 -11.86515 -11.69986 -11.55370 -11.52147 -11.31926 -10.87615 -10.74131 -10.55752 -10.23541 -9.44356 -8.17733 -6.31475 0.83751 1.41476 1.45620 1.55330 1.77012 2.25729 2.45247 2.92069 3.05676 3.12992 3.39227 3.46702 3.70525 3.83455 3.86305 4.01134 4.04971 4.10809 4.14392 4.21244 4.38638 4.40124 4.46196 4.70466 4.74706 4.75587 4.80773 4.81460 4.89983 4.92453 4.99474 5.04500 5.12073 5.22796 5.24099 5.25239 5.27401 5.31553 5.32143 5.67840 5.85907 6.07406 6.43134 6.58909 6.83767 7.32250 7.43606 8.88353 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.008218 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.637504 B = 3406.296626 C = 5622.043037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.253 3.747 10 N -0.597 5.597 11 C 0.151 3.849 12 C -0.186 4.186 13 C -0.169 4.169 14 C -0.155 4.155 15 C 0.527 3.473 16 O -0.577 6.577 17 C -0.097 4.097 18 H 0.075 0.925 19 C -0.097 4.097 20 C -0.080 4.080 21 H 0.146 0.854 22 C -0.169 4.169 23 C 0.371 3.629 24 O -0.484 6.484 25 C -0.139 4.139 26 H 0.101 0.899 27 C -0.106 4.106 28 H 0.266 0.734 29 H 0.014 0.986 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.952 -6.047 4.615 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.132 3.868 10 N -0.327 5.327 11 C 0.028 3.972 12 C -0.205 4.205 13 C -0.206 4.206 14 C -0.192 4.192 15 C 0.316 3.684 16 O -0.459 6.459 17 C -0.119 4.119 18 H 0.093 0.907 19 C -0.135 4.135 20 C -0.098 4.098 21 H 0.164 0.836 22 C -0.206 4.206 23 C 0.248 3.752 24 O -0.360 6.360 25 C -0.159 4.159 26 H 0.119 0.881 27 C -0.144 4.144 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.675 -6.581 4.809 10.535 hybrid contribution -0.381 0.988 -0.570 1.203 sum 6.294 -5.593 4.239 9.427 Atomic orbital electron populations 1.70033 1.07344 1.27976 1.50847 1.25608 0.95402 1.02154 0.94547 0.85581 0.79140 0.79714 0.77736 1.19078 1.21008 1.20209 1.21572 0.93179 0.90954 1.51160 0.92586 1.19098 0.87624 0.83197 0.96889 1.48168 1.45075 1.34069 1.05363 1.20878 0.96787 0.94258 0.85227 1.22632 0.99662 0.94623 1.03621 1.22979 1.01277 0.94620 1.01762 1.23028 1.03982 1.02445 0.89755 1.20416 0.81587 0.80758 0.85651 1.90546 1.33155 1.34285 1.87927 1.22119 1.00861 0.97055 0.91824 0.90668 1.22564 0.98989 0.94866 0.97081 1.23745 0.96968 0.96198 0.92868 0.83599 1.23184 0.97720 0.97144 1.02533 1.26011 0.82352 0.84700 0.82103 1.90365 1.22735 1.62356 1.60516 1.24064 0.99083 0.98683 0.94041 0.88074 1.23554 0.93211 0.95745 1.01842 0.92491 0.96756 0.95737 0.90567 0.91139 0.89502 0.89132 0.88604 0.87363 0.87654 0.92077 0.90883 0.87744 0.85194 0.88338 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.99 13.29 21.45 0.28 -49.70 16 2 C 0.02 1.17 5.46 84.65 0.46 1.63 16 3 Si 0.95 40.34 29.54 68.60 2.03 42.36 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.53 -26.38 8.95 25.60 0.23 -26.15 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.25 11.96 5.03 85.63 0.43 12.39 16 10 N -0.60 -24.92 2.46 -826.14 -2.03 -26.96 16 11 C 0.15 5.59 5.70 86.38 0.49 6.09 16 12 C -0.19 -6.02 5.99 -10.80 -0.06 -6.08 16 13 C -0.17 -4.71 10.18 30.62 0.31 -4.40 16 14 C -0.15 -3.84 10.25 30.62 0.31 -3.52 16 15 C 0.53 21.22 6.58 87.66 0.58 21.80 16 16 O -0.58 -24.17 14.59 -3.04 -0.04 -24.22 16 17 C -0.10 -3.49 1.90 -9.98 -0.02 -3.51 16 18 H 0.08 3.01 6.12 -2.39 -0.01 2.99 16 19 C -0.10 -3.10 5.43 32.27 0.18 -2.92 16 20 C -0.08 -1.78 5.25 -7.23 -0.04 -1.81 16 21 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 22 C -0.17 -3.69 6.10 31.35 0.19 -3.49 16 23 C 0.37 11.08 7.14 30.49 0.22 11.30 16 24 O -0.48 -17.69 17.99 -1.45 -0.03 -17.72 16 25 C -0.14 -4.28 4.08 -8.23 -0.03 -4.31 16 26 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 27 C -0.11 -2.61 6.27 33.38 0.21 -2.40 16 28 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 29 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 30 H 0.02 1.23 5.83 -2.39 -0.01 1.22 16 31 H 0.08 2.83 8.05 -2.39 -0.02 2.81 16 32 H 0.07 2.60 7.18 -2.39 -0.02 2.58 16 33 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.09 2.60 8.04 -2.39 -0.02 2.58 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.06 2.16 7.72 -2.38 -0.02 2.14 16 39 H 0.07 2.48 7.85 -2.39 -0.02 2.46 16 40 H 0.10 2.32 7.84 -2.38 -0.02 2.30 16 41 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.08 2.28 6.89 -2.39 -0.02 2.26 16 Total: -1.00 -61.21 348.37 4.66 -56.55 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.00 Total: 25.09 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 3.46 Total: -5.41 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.75 Total: -76.66 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.07 Total: -41.94 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -61.21 4.66 -56.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520984110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.488 kcal (2) G-P(sol) polarization free energy of solvation -61.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds