Wall clock time and date at job start Tue Mar 31 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76197 * 102.99664 * 2 1 4 4 C 1.38991 * 120.08301 * 0.02562 * 3 2 1 5 5 C 1.38065 * 119.91907 * 180.02562 * 4 3 2 6 6 C 1.38316 * 120.08242 * 0.02562 * 5 4 3 7 7 C 1.38280 * 120.16146 * 359.97438 * 6 5 4 8 8 C 1.38108 * 120.07955 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.04224 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47388 * 260.02285 * 9 8 7 11 11 C 1.46845 * 111.00108 * 45.78752 * 10 9 8 12 12 C 1.53032 * 109.52598 * 185.84093 * 11 10 9 13 13 C 1.53121 * 109.28137 * 300.82110 * 12 11 10 14 14 C 1.50696 * 109.57665 * 177.58899 * 13 12 11 15 15 H 1.08008 * 119.99954 * 240.29012 * 14 13 12 16 16 C 1.37873 * 120.00257 * 60.28381 * 14 13 12 17 17 N 1.31516 * 119.99632 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00319 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46961 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47116 * 120.00381 * 18 16 14 21 21 H 1.48501 * 109.47733 * 240.00427 * 18 16 14 22 22 C 1.53124 * 109.15747 * 57.64985 * 13 12 11 23 23 C 1.46846 * 111.00143 * 169.99773 * 10 9 8 24 24 H 1.08996 * 109.47477 * 59.99955 * 1 2 3 25 25 H 1.08999 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46571 * 299.99636 * 1 2 3 27 27 H 1.08002 * 120.04195 * 0.04169 * 4 3 2 28 28 H 1.08010 * 119.95760 * 179.72373 * 5 4 3 29 29 H 1.07996 * 119.92487 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.96452 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.47069 * 20.02374 * 9 8 7 32 32 H 1.08999 * 109.47550 * 140.01967 * 9 8 7 33 33 H 1.09004 * 109.46295 * 305.85922 * 11 10 9 34 34 H 1.09004 * 109.46327 * 65.82759 * 11 10 9 35 35 H 1.08998 * 109.50717 * 180.87783 * 12 11 10 36 36 H 1.09000 * 109.50610 * 60.76262 * 12 11 10 37 37 H 1.08998 * 109.51896 * 297.75212 * 13 12 11 38 38 H 0.97001 * 119.99873 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.50208 * 182.40121 * 22 13 12 40 40 H 1.09003 * 109.53377 * 62.30959 * 22 13 12 41 41 H 1.08995 * 109.46784 * 294.17668 * 23 10 9 42 42 H 1.08998 * 109.46014 * 54.15868 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0105 0.0000 6 6 2.8328 4.4131 -0.0016 7 6 3.8454 3.4715 -0.0021 8 6 3.5386 2.1250 -0.0016 9 6 4.6429 1.0995 -0.0028 10 7 4.8369 0.5903 -1.3669 11 6 4.8663 1.6898 -2.3399 12 6 4.9230 1.1167 -3.7577 13 6 6.1761 0.2487 -3.9025 14 6 6.2079 -0.3668 -5.2776 15 1 6.2056 -1.4412 -5.3887 16 6 6.2397 0.4415 -6.3941 17 7 6.2428 1.7497 -6.2589 18 14 6.2799 -0.3214 -8.0987 19 1 6.2699 -1.8015 -7.9789 20 1 5.0884 0.1206 -8.8671 21 1 7.5126 0.1102 -8.8054 22 6 6.1443 -0.8596 -2.8464 23 6 6.0522 -0.2292 -1.4549 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.1616 2.3526 0.0016 28 1 0.7211 4.7488 -0.0041 29 1 3.0757 5.4654 -0.0024 30 1 4.8776 3.7895 -0.0030 31 1 5.5666 1.5599 0.3480 32 1 4.3742 0.2753 0.6579 33 1 3.9677 2.2969 -2.2292 34 1 5.7463 2.3082 -2.1627 35 1 4.9606 1.9331 -4.4790 36 1 4.0365 0.5094 -3.9406 37 1 7.0641 0.8640 -3.7581 38 1 6.2656 2.3184 -7.0444 39 1 7.0544 -1.4553 -2.9165 40 1 5.2774 -1.4986 -3.0145 41 1 6.9266 0.3980 -1.2818 42 1 6.0148 -1.0161 -0.7016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543807429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:30 Heat of formation + Delta-G solvation = 20.827108 kcal Electronic energy + Delta-G solvation = -21364.969549 eV Core-core repulsion = 18435.469590 eV Total energy + Delta-G solvation = -2929.499958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52209 -37.72613 -34.18596 -32.12571 -31.25123 -30.21282 -29.65944 -28.82502 -26.50251 -24.35908 -22.83882 -22.06407 -21.69994 -20.56844 -18.47762 -17.42798 -16.32823 -15.97877 -15.48059 -15.18735 -14.63716 -14.39946 -14.10756 -13.88777 -13.78447 -13.50302 -12.93623 -12.81713 -12.71344 -12.48674 -12.19088 -12.11751 -11.73356 -11.33094 -11.25081 -11.03254 -10.90941 -10.66811 -10.35222 -10.12147 -9.98838 -9.85817 -9.63124 -9.34189 -8.92402 -8.76789 -8.56254 -8.22574 -7.66013 -7.16128 -5.90871 -3.95639 1.28387 1.37160 1.65530 2.55668 3.34220 3.42143 3.46575 3.69999 4.50440 4.62805 4.83001 4.84871 4.98936 5.01360 5.06188 5.32746 5.39533 5.44348 5.56680 5.61962 5.71414 5.83650 5.87368 5.98684 6.05364 6.20914 6.27056 6.32810 6.42814 6.49434 6.58397 6.72373 6.73433 6.93480 6.95392 7.17210 7.26983 7.53957 7.71163 7.78626 7.91898 8.14131 8.24864 8.56286 9.08370 9.68348 11.15347 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.004393 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.373445 B = 6372.016690 C = 6575.187054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 S -0.072 6.072 3 C -0.068 4.068 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.127 4.127 7 C -0.095 4.095 8 C -0.055 4.055 9 C 0.089 3.911 10 N -0.520 5.520 11 C 0.058 3.942 12 C -0.101 4.101 13 C 0.048 3.952 14 C -0.507 4.507 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.105 4.105 23 C 0.061 3.939 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.257 0.743 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.022 0.978 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 2.521 15.509 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.172 5.828 3 C -0.182 4.182 4 C -0.163 4.163 5 C -0.125 4.125 6 C -0.148 4.148 7 C -0.116 4.116 8 C -0.062 4.062 9 C -0.039 4.039 10 N -0.245 5.245 11 C -0.069 4.069 12 C -0.140 4.140 13 C 0.029 3.971 14 C -0.545 4.545 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.143 4.143 23 C -0.066 4.066 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.431 1.263 15.277 17.998 hybrid contribution -0.193 1.472 -0.834 1.703 sum -9.624 2.735 14.443 17.570 Atomic orbital electron populations 1.23756 0.97479 1.06709 1.05079 1.85933 1.03189 1.02218 1.91494 1.21635 0.95786 0.97095 1.03679 1.21098 0.97955 0.93261 1.04004 1.20967 0.96529 0.95185 0.99844 1.21084 0.92748 0.99402 1.01558 1.21043 0.99507 0.91982 0.99027 1.19431 0.92541 0.94281 0.99907 1.21080 0.94410 0.95441 0.92957 1.62141 1.37949 1.22283 1.02088 1.22309 0.98478 0.91619 0.94498 1.21625 0.99215 1.01286 0.91843 1.18687 0.93922 0.91987 0.92483 1.21260 1.49618 0.92841 0.90821 0.92739 1.24963 0.95326 0.94826 0.98929 1.69898 1.51368 1.02812 1.29116 0.86601 0.77435 0.79515 0.84829 1.19829 1.21141 1.21198 1.21660 1.00215 0.99415 0.92962 1.22124 0.89373 0.95821 0.99322 0.89958 0.87719 0.90424 0.86160 0.86120 0.86021 0.85856 0.94471 0.90124 0.92374 0.96398 0.89210 0.93878 0.96302 0.93264 0.93295 0.92377 0.95940 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.15 101.05 0.92 -0.62 16 2 S -0.07 -0.98 20.99 -107.50 -2.26 -3.24 16 3 C -0.07 -0.98 6.11 -39.04 -0.24 -1.22 16 4 C -0.14 -1.74 9.36 -39.37 -0.37 -2.11 16 5 C -0.11 -1.22 10.04 -39.62 -0.40 -1.62 16 6 C -0.13 -1.53 10.04 -39.54 -0.40 -1.93 16 7 C -0.10 -1.30 8.63 -39.61 -0.34 -1.64 16 8 C -0.06 -0.83 3.70 -104.40 -0.39 -1.21 16 9 C 0.09 1.38 4.77 -4.98 -0.02 1.36 16 10 N -0.52 -9.59 4.80 -236.12 -1.13 -10.72 16 11 C 0.06 1.19 4.80 -3.84 -0.02 1.18 16 12 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 13 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 14 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 15 H 0.05 1.52 7.75 -52.48 -0.41 1.11 16 16 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -25.90 11.37 55.43 0.63 -25.27 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.10 -2.26 5.32 -26.65 -0.14 -2.40 16 23 C 0.06 1.13 5.42 -3.83 -0.02 1.11 16 24 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 25 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.08 0.63 7.75 -51.92 -0.40 0.23 16 27 H 0.12 1.25 5.88 -52.49 -0.31 0.94 16 28 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.55 8.04 -52.48 -0.42 1.13 16 31 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 32 H 0.08 1.20 7.25 -51.93 -0.38 0.83 16 33 H 0.06 1.18 6.03 -51.93 -0.31 0.86 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 2.45 6.18 -51.93 -0.32 2.12 16 36 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -29.73 340.63 -11.51 -41.23 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.73 Total: -0.16 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -2.13 Total: -23.62 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.50 Total: -35.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.26 Total: -3.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.73 -11.51 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543807429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.061 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds