Wall clock time and date at job start Tue Mar 31 2020 07:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76197 * 102.99664 * 2 1 4 4 C 1.38991 * 120.08301 * 0.02562 * 3 2 1 5 5 C 1.38065 * 119.91907 * 180.02562 * 4 3 2 6 6 C 1.38316 * 120.08242 * 0.02562 * 5 4 3 7 7 C 1.38280 * 120.16146 * 359.97438 * 6 5 4 8 8 C 1.38108 * 120.07955 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.04224 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47388 * 260.02285 * 9 8 7 11 11 C 1.46845 * 111.00108 * 45.78752 * 10 9 8 12 12 C 1.53032 * 109.52598 * 185.84093 * 11 10 9 13 13 C 1.53121 * 109.28137 * 300.82110 * 12 11 10 14 14 C 1.50696 * 109.57665 * 177.58899 * 13 12 11 15 15 H 1.08008 * 119.99954 * 240.29012 * 14 13 12 16 16 C 1.37873 * 120.00257 * 60.28381 * 14 13 12 17 17 N 1.31516 * 119.99632 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00319 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46961 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47116 * 120.00381 * 18 16 14 21 21 H 1.48501 * 109.47733 * 240.00427 * 18 16 14 22 22 C 1.53124 * 109.15747 * 57.64985 * 13 12 11 23 23 C 1.46846 * 111.00143 * 169.99773 * 10 9 8 24 24 H 1.08996 * 109.47477 * 59.99955 * 1 2 3 25 25 H 1.08999 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46571 * 299.99636 * 1 2 3 27 27 H 1.08002 * 120.04195 * 0.04169 * 4 3 2 28 28 H 1.08010 * 119.95760 * 179.72373 * 5 4 3 29 29 H 1.07996 * 119.92487 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.96452 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.47069 * 20.02374 * 9 8 7 32 32 H 1.08999 * 109.47550 * 140.01967 * 9 8 7 33 33 H 1.09004 * 109.46295 * 305.85922 * 11 10 9 34 34 H 1.09004 * 109.46327 * 65.82759 * 11 10 9 35 35 H 1.08998 * 109.50717 * 180.87783 * 12 11 10 36 36 H 1.09000 * 109.50610 * 60.76262 * 12 11 10 37 37 H 1.08998 * 109.51896 * 297.75212 * 13 12 11 38 38 H 0.97001 * 119.99873 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.50208 * 182.40121 * 22 13 12 40 40 H 1.09003 * 109.53377 * 62.30959 * 22 13 12 41 41 H 1.08995 * 109.46784 * 294.17668 * 23 10 9 42 42 H 1.08998 * 109.46014 * 54.15868 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0105 0.0000 6 6 2.8328 4.4131 -0.0016 7 6 3.8454 3.4715 -0.0021 8 6 3.5386 2.1250 -0.0016 9 6 4.6429 1.0995 -0.0028 10 7 4.8369 0.5903 -1.3669 11 6 4.8663 1.6898 -2.3399 12 6 4.9230 1.1167 -3.7577 13 6 6.1761 0.2487 -3.9025 14 6 6.2079 -0.3668 -5.2776 15 1 6.2056 -1.4412 -5.3887 16 6 6.2397 0.4415 -6.3941 17 7 6.2428 1.7497 -6.2589 18 14 6.2799 -0.3214 -8.0987 19 1 6.2699 -1.8015 -7.9789 20 1 5.0884 0.1206 -8.8671 21 1 7.5126 0.1102 -8.8054 22 6 6.1443 -0.8596 -2.8464 23 6 6.0522 -0.2292 -1.4549 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 0.1616 2.3526 0.0016 28 1 0.7211 4.7488 -0.0041 29 1 3.0757 5.4654 -0.0024 30 1 4.8776 3.7895 -0.0030 31 1 5.5666 1.5599 0.3480 32 1 4.3742 0.2753 0.6579 33 1 3.9677 2.2969 -2.2292 34 1 5.7463 2.3082 -2.1627 35 1 4.9606 1.9331 -4.4790 36 1 4.0365 0.5094 -3.9406 37 1 7.0641 0.8640 -3.7581 38 1 6.2656 2.3184 -7.0444 39 1 7.0544 -1.4553 -2.9165 40 1 5.2774 -1.4986 -3.0145 41 1 6.9266 0.3980 -1.2818 42 1 6.0148 -1.0161 -0.7016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543807429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:29 Heat of formation + Delta-G solvation = 5.212867 kcal Electronic energy + Delta-G solvation = -21365.646633 eV Core-core repulsion = 18435.469590 eV Total energy + Delta-G solvation = -2930.177043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68566 -39.18757 -35.92156 -33.82920 -32.20656 -31.73753 -31.36848 -29.60791 -28.16148 -26.01133 -23.97146 -23.60220 -23.27537 -21.84606 -20.30225 -18.47591 -18.36225 -16.97982 -16.96289 -16.50329 -16.26736 -15.74309 -15.31938 -14.92945 -14.88167 -14.72282 -14.63462 -14.34784 -14.22025 -13.60320 -13.54644 -13.34741 -13.12885 -12.92214 -12.83144 -12.55856 -12.45469 -12.17467 -12.01175 -11.92968 -11.83714 -11.34863 -10.90082 -10.79576 -10.65181 -10.58043 -10.36090 -9.77088 -9.11684 -8.19908 -8.06557 -6.19698 0.30319 0.38940 0.72895 1.39995 1.41695 1.53427 1.65772 2.44724 2.68822 3.19485 3.23827 3.76029 3.87786 4.15018 4.24545 4.27836 4.30527 4.31873 4.33195 4.47246 4.49736 4.50872 4.64532 4.70947 4.80161 4.85413 4.90641 4.92556 4.98920 5.07875 5.11872 5.25382 5.33201 5.37326 5.52598 5.57749 5.59840 5.64683 5.99302 6.02196 6.04954 6.30966 6.35961 6.42797 6.92045 7.47859 8.98316 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.004393 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.373445 B = 6372.016690 C = 6575.187054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.126 6.126 3 C -0.079 4.079 4 C -0.146 4.146 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.080 4.080 9 C 0.095 3.905 10 N -0.524 5.524 11 C 0.079 3.921 12 C -0.090 4.090 13 C 0.045 3.955 14 C -0.531 4.531 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.953 3.047 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.280 1.280 22 C -0.097 4.097 23 C 0.067 3.933 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.010 0.990 35 H 0.058 0.942 36 H 0.025 0.975 37 H -0.012 1.012 38 H 0.259 0.741 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.022 0.978 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 2.662 16.372 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.117 5.883 3 C -0.193 4.193 4 C -0.169 4.169 5 C -0.123 4.123 6 C -0.151 4.151 7 C -0.129 4.129 8 C -0.086 4.086 9 C -0.032 4.032 10 N -0.249 5.249 11 C -0.049 4.049 12 C -0.128 4.128 13 C 0.027 3.973 14 C -0.569 4.569 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.135 4.135 23 C -0.061 4.061 24 H 0.103 0.897 25 H 0.138 0.862 26 H 0.114 0.886 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.006 0.994 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.825 1.399 16.158 19.499 hybrid contribution 0.177 1.459 -1.078 1.822 sum -10.648 2.858 15.080 18.681 Atomic orbital electron populations 1.23796 0.93608 1.08051 1.06032 1.85993 1.07607 1.02960 1.91719 1.21764 0.96057 0.97348 1.04104 1.21434 0.98637 0.93467 1.03400 1.21378 0.97191 0.95520 0.98217 1.21423 0.92721 1.00374 1.00621 1.21220 1.00313 0.91972 0.99363 1.19472 0.92709 0.94583 1.01870 1.21052 0.95221 0.96130 0.90831 1.62036 1.37750 1.21597 1.03502 1.21944 0.98280 0.91897 0.92769 1.21370 0.97899 0.99734 0.93845 1.18651 0.92832 0.92835 0.93000 1.21617 1.49975 0.92842 0.92450 0.93122 1.25740 0.94905 0.95271 1.02726 1.70036 1.51728 1.03953 1.30142 0.85587 0.77559 0.78890 0.80110 1.19177 1.20681 1.20580 1.21516 1.00119 0.98109 0.93733 1.22060 0.89544 0.96519 0.97977 0.89721 0.86204 0.88629 0.84137 0.83104 0.83679 0.85568 0.93753 0.89414 0.91945 0.97174 0.92395 0.95601 0.99411 0.93164 0.92724 0.93139 0.95937 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.15 113.37 1.04 -1.44 16 2 S -0.13 -3.32 20.99 -56.49 -1.19 -4.50 16 3 C -0.08 -2.18 6.11 22.62 0.14 -2.04 16 4 C -0.15 -3.32 9.36 22.41 0.21 -3.11 16 5 C -0.10 -2.11 10.04 22.25 0.22 -1.89 16 6 C -0.13 -2.87 10.04 22.30 0.22 -2.65 16 7 C -0.11 -2.84 8.63 22.25 0.19 -2.65 16 8 C -0.08 -2.33 3.70 -19.72 -0.07 -2.40 16 9 C 0.09 2.88 4.77 85.56 0.41 3.28 16 10 N -0.52 -19.18 4.80 -900.95 -4.32 -23.50 16 11 C 0.08 3.29 4.80 86.32 0.41 3.71 16 12 C -0.09 -4.57 5.12 30.65 0.16 -4.41 16 13 C 0.05 2.38 2.16 -11.46 -0.02 2.36 16 14 C -0.53 -30.45 8.56 25.60 0.22 -30.23 16 15 H 0.05 2.87 7.75 -2.91 -0.02 2.84 16 16 C 0.01 0.67 5.31 84.65 0.45 1.12 16 17 N -0.92 -54.63 11.37 21.45 0.24 -54.39 16 18 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.10 -4.22 5.32 30.65 0.16 -4.05 16 23 C 0.07 2.42 5.42 86.33 0.47 2.89 16 24 H 0.08 1.41 7.75 -2.39 -0.02 1.39 16 25 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.28 7.75 -2.39 -0.02 1.26 16 27 H 0.14 2.51 5.88 -2.91 -0.02 2.49 16 28 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.13 3.10 8.04 -2.91 -0.02 3.08 16 31 H 0.04 1.27 7.94 -2.38 -0.02 1.25 16 32 H 0.09 2.54 7.25 -2.39 -0.02 2.52 16 33 H 0.06 2.55 6.03 -2.38 -0.01 2.53 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 3.29 6.18 -2.39 -0.01 3.27 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 2.68 8.12 -2.39 -0.02 2.66 16 Total: -1.00 -65.32 340.63 1.95 -63.37 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.98 Total: 13.60 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 4.21 Total: -41.50 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -4.08 Total: -77.89 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.19 Total: -4.50 kcal Total: -65.32 1.95 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543807429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.587 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds