Wall clock time and date at job start Tue Mar 31 2020 09:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48497 * 109.47056 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.47155 * 29.99706 * 3 2 1 6 6 H 1.48497 * 109.47425 * 149.99915 * 3 2 1 7 7 C 1.37876 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34780 * 120.63395 * 126.29715 * 13 12 11 15 15 O 1.21284 * 119.99750 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00162 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.41386 * 126.58333 * 90.00054 * 18 17 16 20 20 C 1.34503 * 106.84223 * 179.97438 * 19 18 17 21 21 O 1.34302 * 108.42349 * 359.97438 * 20 19 18 22 22 C 1.34302 * 109.47830 * 359.77091 * 21 20 19 23 23 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 24 24 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 25 25 H 0.97001 * 120.00836 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 27 27 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 28 28 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 29 29 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 30 30 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 31 31 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 32 32 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 33 33 H 1.09000 * 109.47171 * 299.99537 * 16 14 13 34 34 H 1.08993 * 109.47429 * 60.00485 * 16 14 13 35 35 H 1.08999 * 109.47240 * 299.99805 * 17 16 14 36 36 H 1.09003 * 109.47483 * 59.99982 * 17 16 14 37 37 H 1.08004 * 126.57144 * 359.92368 * 19 18 17 38 38 H 1.08006 * 125.78960 * 180.02562 * 20 19 18 39 39 H 1.07995 * 125.79504 * 180.23717 * 22 21 20 40 40 H 1.08994 * 109.58580 * 173.39910 * 23 13 12 41 41 H 1.09006 * 109.57831 * 293.67403 * 23 13 12 42 42 H 1.08994 * 109.50232 * 61.43679 * 24 10 9 43 43 H 1.09007 * 109.52628 * 301.35340 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.0435 -3.6504 -1.3088 12 6 4.0596 -4.7967 -1.2881 13 7 3.3508 -6.0559 -1.0228 14 6 3.4920 -7.1109 -1.8496 15 8 4.2100 -7.0263 -2.8234 16 6 2.7578 -8.3956 -1.5641 17 6 3.0901 -9.4244 -2.6468 18 6 2.3564 -10.7092 -2.3609 19 6 1.0660 -11.0624 -2.8183 20 6 0.8020 -12.2883 -2.3316 21 8 1.8583 -12.6943 -1.6083 22 6 2.8061 -11.7430 -1.6270 23 6 2.4846 -6.1432 0.1609 24 6 1.4842 -4.9836 0.1263 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 2.9291 -3.5552 0.8427 29 1 3.5686 -2.7006 -1.4103 30 1 2.3633 -3.7824 -2.1502 31 1 4.7951 -4.6190 -0.5035 32 1 4.5624 -4.8568 -2.2533 33 1 3.0640 -8.7807 -0.5914 34 1 1.6843 -8.2072 -1.5588 35 1 2.7843 -9.0396 -3.6197 36 1 4.1637 -9.6128 -2.6517 37 1 0.4166 -10.4625 -3.4387 38 1 -0.1051 -12.8510 -2.4955 39 1 3.7655 -11.7974 -1.1340 40 1 1.9462 -7.0909 0.1506 41 1 3.0920 -6.0779 1.0637 42 1 0.8185 -5.1029 -0.7285 43 1 0.8987 -4.9808 1.0458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563812929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:03 Heat of formation + Delta-G solvation = -46.953288 kcal Electronic energy + Delta-G solvation = -22730.423775 eV Core-core repulsion = 19355.231767 eV Total energy + Delta-G solvation = -3375.192008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.77392 -40.03293 -37.43411 -35.02145 -34.02318 -32.21204 -31.71777 -30.69142 -29.36633 -28.03250 -25.24232 -24.31640 -22.61440 -21.83001 -21.74363 -20.45435 -19.68710 -18.57475 -17.78106 -16.76007 -16.28276 -16.18087 -15.71377 -15.60412 -14.90199 -14.54463 -14.14765 -13.89935 -13.62822 -13.21853 -13.06160 -13.00679 -12.84776 -12.65141 -12.30056 -12.13577 -12.02163 -11.84103 -11.19740 -11.10994 -11.00986 -10.76404 -10.69488 -10.43328 -10.20628 -9.93819 -9.66591 -9.58953 -9.27262 -8.98159 -8.77360 -8.37599 -8.33759 -6.01217 -4.03073 1.52571 2.34011 2.74082 2.90919 3.19640 3.30790 3.37503 3.40090 4.43698 4.44944 4.56207 4.72758 4.91261 4.94497 5.05906 5.10611 5.33913 5.35251 5.40510 5.43415 5.49978 5.54870 5.59897 5.69236 5.82781 5.83355 5.95615 5.97831 6.03613 6.07387 6.28778 6.33863 6.36811 6.52145 6.65664 6.87690 6.97392 7.00308 7.10185 7.58073 7.64770 7.79336 7.98263 8.29872 8.41047 9.03357 9.60935 11.10084 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.002673 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.562513 B =10471.052039 C =10890.659696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.117 4.117 12 C 0.108 3.892 13 N -0.606 5.606 14 C 0.512 3.488 15 O -0.552 6.552 16 C -0.133 4.133 17 C -0.035 4.035 18 C -0.176 4.176 19 C -0.208 4.208 20 C -0.045 4.045 21 O -0.180 6.180 22 C -0.043 4.043 23 C 0.106 3.894 24 C -0.131 4.131 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.201 0.799 39 H 0.201 0.799 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -22.801 -1.472 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.155 4.155 12 C -0.014 4.014 13 N -0.339 5.339 14 C 0.300 3.700 15 O -0.430 6.430 16 C -0.173 4.173 17 C -0.072 4.072 18 C -0.177 4.177 19 C -0.227 4.227 20 C -0.112 4.112 21 O -0.075 6.075 22 C -0.110 4.110 23 C -0.017 4.017 24 C -0.169 4.169 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.166 0.834 38 H 0.218 0.782 39 H 0.218 0.782 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.584 -22.900 -1.826 23.250 hybrid contribution 0.169 1.283 0.015 1.294 sum 3.752 -21.617 -1.811 22.015 Atomic orbital electron populations 1.69954 1.06057 1.26553 1.50988 1.25017 0.94806 0.99205 0.95442 0.86643 0.79866 0.83686 0.78102 1.20701 1.21297 1.19901 1.21239 0.92956 0.90956 1.50286 0.92594 1.19122 0.93589 0.91079 0.97129 1.21245 0.97961 0.94479 0.96260 1.21943 0.97618 0.97271 0.98709 1.21768 0.94902 0.82863 1.01890 1.48202 1.46565 1.13022 1.26091 1.20635 0.81830 0.85135 0.82393 1.90669 1.40255 1.83586 1.28521 1.21664 1.01780 0.92989 1.00847 1.19702 0.99597 0.89178 0.98768 1.20537 0.96284 0.98064 1.02857 1.21817 0.97682 0.97414 1.05788 1.24022 0.92167 0.97053 0.97951 1.84063 1.23671 1.42067 1.57726 1.23901 0.94686 0.88043 1.04370 1.21843 0.92632 0.99808 0.87372 1.22028 0.97547 0.95041 1.02264 0.93046 0.96674 0.96618 0.92357 0.89800 0.92414 0.91967 0.89724 0.89093 0.88774 0.90137 0.90380 0.83413 0.78225 0.78240 0.90424 0.91475 0.91995 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.28 55.43 0.74 -25.84 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.02 8.39 -34.44 -0.29 -14.31 16 8 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 9 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 10 C -0.08 -1.54 2.10 -90.42 -0.19 -1.73 16 11 C -0.12 -2.13 5.21 -26.45 -0.14 -2.27 16 12 C 0.11 1.69 6.42 -3.71 -0.02 1.67 16 13 N -0.61 -8.67 2.97 -172.77 -0.51 -9.19 16 14 C 0.51 7.29 7.70 -10.98 -0.08 7.21 16 15 O -0.55 -9.69 15.39 5.55 0.09 -9.61 16 16 C -0.13 -1.38 4.03 -27.88 -0.11 -1.49 16 17 C -0.03 -0.36 5.02 -27.88 -0.14 -0.50 16 18 C -0.18 -1.68 5.42 -104.74 -0.57 -2.25 16 19 C -0.21 -1.86 10.87 -39.70 -0.43 -2.30 16 20 C -0.04 -0.35 12.09 29.41 0.36 0.01 16 21 O -0.18 -1.66 10.65 5.71 0.06 -1.60 16 22 C -0.04 -0.36 12.01 29.42 0.35 -0.01 16 23 C 0.11 1.31 6.34 -3.71 -0.02 1.29 16 24 C -0.13 -2.01 5.36 -26.62 -0.14 -2.15 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 33 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 34 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 35 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 38 H 0.20 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -32.49 350.41 -7.87 -40.36 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.84 Total: -0.99 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.66 Total: -14.78 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.22 Total: -35.03 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.15 Total: -11.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.49 -7.87 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563812929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.592 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds