Wall clock time and date at job start Tue Mar 31 2020 09:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48497 * 109.47056 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.47155 * 29.99706 * 3 2 1 6 6 H 1.48497 * 109.47425 * 149.99915 * 3 2 1 7 7 C 1.37876 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34780 * 120.63395 * 126.29715 * 13 12 11 15 15 O 1.21284 * 119.99750 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00162 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.41386 * 126.58333 * 90.00054 * 18 17 16 20 20 C 1.34503 * 106.84223 * 179.97438 * 19 18 17 21 21 O 1.34302 * 108.42349 * 359.97438 * 20 19 18 22 22 C 1.34302 * 109.47830 * 359.77091 * 21 20 19 23 23 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 24 24 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 25 25 H 0.97001 * 120.00836 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 27 27 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 28 28 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 29 29 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 30 30 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 31 31 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 32 32 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 33 33 H 1.09000 * 109.47171 * 299.99537 * 16 14 13 34 34 H 1.08993 * 109.47429 * 60.00485 * 16 14 13 35 35 H 1.08999 * 109.47240 * 299.99805 * 17 16 14 36 36 H 1.09003 * 109.47483 * 59.99982 * 17 16 14 37 37 H 1.08004 * 126.57144 * 359.92368 * 19 18 17 38 38 H 1.08006 * 125.78960 * 180.02562 * 20 19 18 39 39 H 1.07995 * 125.79504 * 180.23717 * 22 21 20 40 40 H 1.08994 * 109.58580 * 173.39910 * 23 13 12 41 41 H 1.09006 * 109.57831 * 293.67403 * 23 13 12 42 42 H 1.08994 * 109.50232 * 61.43679 * 24 10 9 43 43 H 1.09007 * 109.52628 * 301.35340 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.0435 -3.6504 -1.3088 12 6 4.0596 -4.7967 -1.2881 13 7 3.3508 -6.0559 -1.0228 14 6 3.4920 -7.1109 -1.8496 15 8 4.2100 -7.0263 -2.8234 16 6 2.7578 -8.3956 -1.5641 17 6 3.0901 -9.4244 -2.6468 18 6 2.3564 -10.7092 -2.3609 19 6 1.0660 -11.0624 -2.8183 20 6 0.8020 -12.2883 -2.3316 21 8 1.8583 -12.6943 -1.6083 22 6 2.8061 -11.7430 -1.6270 23 6 2.4846 -6.1432 0.1609 24 6 1.4842 -4.9836 0.1263 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 2.9291 -3.5552 0.8427 29 1 3.5686 -2.7006 -1.4103 30 1 2.3633 -3.7824 -2.1502 31 1 4.7951 -4.6190 -0.5035 32 1 4.5624 -4.8568 -2.2533 33 1 3.0640 -8.7807 -0.5914 34 1 1.6843 -8.2072 -1.5588 35 1 2.7843 -9.0396 -3.6197 36 1 4.1637 -9.6128 -2.6517 37 1 0.4166 -10.4625 -3.4387 38 1 -0.1051 -12.8510 -2.4955 39 1 3.7655 -11.7974 -1.1340 40 1 1.9462 -7.0909 0.1506 41 1 3.0920 -6.0779 1.0637 42 1 0.8185 -5.1029 -0.7285 43 1 0.8987 -4.9808 1.0458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563812929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:02 Heat of formation + Delta-G solvation = -65.342142 kcal Electronic energy + Delta-G solvation = -22731.221176 eV Core-core repulsion = 19355.231767 eV Total energy + Delta-G solvation = -3375.989409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -43.39778 -41.20059 -38.76924 -35.80794 -35.70039 -33.99444 -32.66530 -31.77920 -30.24942 -29.58830 -26.59600 -25.63197 -23.89683 -23.29910 -22.42770 -21.35552 -20.89100 -19.78943 -18.57553 -18.39171 -17.70830 -16.96646 -16.73708 -16.61594 -16.53257 -15.51270 -15.27174 -15.12883 -14.98114 -14.57151 -14.46653 -14.08614 -13.93283 -13.64111 -13.54157 -13.19720 -13.08407 -12.99844 -12.91170 -12.69472 -12.48776 -12.32472 -12.09222 -11.87228 -11.79002 -11.32865 -11.04925 -11.02183 -10.70245 -10.53079 -10.49599 -9.58563 -9.38888 -8.17628 -6.26586 0.92394 1.40008 1.40443 1.51092 1.63982 1.67670 2.10947 2.37472 2.41600 3.16059 3.52367 3.91238 3.95084 4.00817 4.07327 4.11463 4.19195 4.22751 4.32361 4.40407 4.43058 4.54114 4.68262 4.72168 4.82467 4.85922 4.88952 4.90168 5.00818 5.11725 5.14428 5.25969 5.31095 5.34134 5.38257 5.38854 5.55681 5.61448 5.64596 5.81024 5.90138 6.26137 6.29396 6.48406 6.90279 7.18744 7.41986 8.94147 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.002673 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.562513 B =10471.052039 C =10890.659696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.110 4.110 12 C 0.117 3.883 13 N -0.609 5.609 14 C 0.508 3.492 15 O -0.590 6.590 16 C -0.123 4.123 17 C -0.027 4.027 18 C -0.194 4.194 19 C -0.230 4.230 20 C -0.041 4.041 21 O -0.190 6.190 22 C -0.041 4.041 23 C 0.112 3.888 24 C -0.126 4.126 25 H 0.261 0.739 26 H -0.017 1.017 27 H -0.008 1.008 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.232 0.768 39 H 0.226 0.774 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -24.506 -0.287 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.092 4.092 11 C -0.148 4.148 12 C -0.006 4.006 13 N -0.341 5.341 14 C 0.298 3.702 15 O -0.472 6.472 16 C -0.162 4.162 17 C -0.065 4.065 18 C -0.195 4.195 19 C -0.250 4.250 20 C -0.108 4.108 21 O -0.086 6.086 22 C -0.108 4.108 23 C -0.010 4.010 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.001 0.999 27 H 0.011 0.989 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.170 0.830 38 H 0.248 0.752 39 H 0.242 0.758 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.460 -24.621 -0.626 25.029 hybrid contribution -0.151 1.809 -0.388 1.856 sum 4.309 -22.812 -1.015 23.237 Atomic orbital electron populations 1.70088 1.07747 1.27506 1.52316 1.25927 0.95663 1.03149 0.95212 0.85559 0.78865 0.79056 0.78266 1.20241 1.21005 1.18578 1.21683 0.93488 0.92139 1.49351 0.91974 1.19020 0.94037 0.93010 0.94367 1.21095 0.96976 0.94390 0.96747 1.21796 0.97657 0.97824 0.97533 1.21543 0.94277 0.82687 1.02094 1.48308 1.46615 1.12440 1.26785 1.21336 0.81294 0.86080 0.81440 1.90654 1.42050 1.84347 1.30105 1.21678 1.01702 0.90706 1.02141 1.19555 0.99452 0.89661 0.97861 1.20535 0.96780 0.98140 1.04069 1.22032 0.97925 0.98332 1.06664 1.24629 0.92584 0.96843 0.96698 1.84083 1.24145 1.42388 1.57976 1.24380 0.95286 0.87355 1.03796 1.21961 0.92004 0.99807 0.87191 1.21950 0.97952 0.94219 1.02332 0.93000 0.99870 0.98923 0.91872 0.91579 0.94327 0.90335 0.90708 0.86262 0.87692 0.92102 0.90739 0.83032 0.75174 0.75760 0.86880 0.89468 0.93106 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 13.28 21.45 0.28 -56.56 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.53 -29.21 8.39 25.60 0.21 -28.99 16 8 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 9 C 0.03 1.66 4.45 29.85 0.13 1.80 16 10 C -0.07 -2.79 2.10 -10.66 -0.02 -2.81 16 11 C -0.11 -4.04 5.21 30.78 0.16 -3.88 16 12 C 0.12 3.56 6.42 86.36 0.55 4.11 16 13 N -0.61 -16.22 2.97 -818.90 -2.44 -18.66 16 14 C 0.51 13.66 7.70 87.66 0.67 14.33 16 15 O -0.59 -20.54 15.39 -3.04 -0.05 -20.58 16 16 C -0.12 -2.23 4.03 29.85 0.12 -2.10 16 17 C -0.03 -0.53 5.02 29.85 0.15 -0.38 16 18 C -0.19 -3.36 5.42 -19.94 -0.11 -3.47 16 19 C -0.23 -3.78 10.87 22.19 0.24 -3.54 16 20 C -0.04 -0.55 12.09 66.96 0.81 0.26 16 21 O -0.19 -3.06 10.65 -2.47 -0.03 -3.08 16 22 C -0.04 -0.60 12.01 66.97 0.80 0.20 16 23 C 0.11 2.40 6.34 86.36 0.55 2.95 16 24 C -0.13 -3.71 5.36 30.67 0.16 -3.54 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.63 6.93 -2.39 -0.02 2.61 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.45 7.00 -2.39 -0.02 2.43 16 33 H 0.12 1.54 7.94 -2.39 -0.02 1.52 16 34 H 0.10 1.73 7.69 -2.39 -0.02 1.72 16 35 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.23 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.23 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.11 1.69 5.93 -2.39 -0.01 1.68 16 41 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -72.36 350.41 5.69 -66.67 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.98 Total: 10.76 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.91 Total: -24.73 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -2.15 Total: -75.22 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.67 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.36 5.69 -66.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563812929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.327 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds