Wall clock time and date at job start Tue Mar 31 2020 07:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76193 * 103.00176 * 2 1 4 4 C 1.39003 * 120.20245 * 359.97438 * 3 2 1 5 5 C 1.37769 * 119.68997 * 179.87130 * 4 3 2 6 6 C 1.39006 * 120.65831 * 0.02562 * 5 4 3 7 7 C 1.37756 * 119.80643 * 0.18260 * 6 5 4 8 8 C 1.38672 * 120.20197 * 179.97438 * 3 2 1 9 9 C 1.50646 * 122.56187 * 179.66447 * 7 6 5 10 10 H 1.08995 * 109.22152 * 257.26887 * 9 7 6 11 11 N 1.46904 * 109.25138 * 137.82574 * 9 7 6 12 12 C 1.46895 * 111.00211 * 152.82027 * 11 9 7 13 13 C 1.52995 * 109.47089 * 185.18942 * 12 11 9 14 14 C 1.50706 * 109.46900 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99526 * 180.02562 * 14 13 12 17 17 N 1.31524 * 119.99741 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00439 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46764 * 90.00307 * 18 16 14 20 20 H 1.48503 * 109.47343 * 210.00334 * 18 16 14 21 21 H 1.48495 * 109.47218 * 330.00548 * 18 16 14 22 22 C 1.52726 * 110.60424 * 17.53827 * 9 7 6 23 23 C 1.53326 * 108.38155 * 308.96468 * 22 9 7 24 24 C 1.50658 * 117.65849 * 180.28947 * 6 5 4 25 25 H 1.09000 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46915 * 300.00237 * 1 2 3 27 27 H 1.09005 * 109.46869 * 59.99977 * 1 2 3 28 28 H 1.08002 * 120.15314 * 359.85666 * 4 3 2 29 29 H 1.08000 * 119.67097 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.75197 * 0.06802 * 8 3 2 31 31 H 1.00899 * 110.99927 * 276.77451 * 11 9 7 32 32 H 1.09004 * 109.47134 * 305.18863 * 12 11 9 33 33 H 1.08998 * 109.47054 * 65.18523 * 12 11 9 34 34 H 1.08998 * 109.47089 * 299.99509 * 13 12 11 35 35 H 1.08998 * 109.47514 * 59.99863 * 13 12 11 36 36 H 0.96996 * 120.00073 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.68166 * 68.68597 * 22 9 7 38 38 H 1.09004 * 109.68158 * 189.24155 * 22 9 7 39 39 H 1.09007 * 109.68597 * 189.66553 * 23 22 9 40 40 H 1.09002 * 109.68331 * 310.22122 * 23 22 9 41 41 H 1.09004 * 109.25768 * 317.83260 * 24 6 5 42 42 H 1.09001 * 109.25613 * 77.30253 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6684 -0.0005 5 6 1.5191 4.0079 0.0022 6 6 2.8474 4.4177 0.0049 7 6 3.8541 3.4773 0.0011 8 6 3.5351 2.1268 0.0005 9 6 5.3133 3.8517 -0.0037 10 1 5.7138 3.7216 -1.0090 11 7 6.0411 2.9761 0.9246 12 6 7.4454 2.8302 0.5192 13 6 8.1362 1.8136 1.4302 14 6 9.5772 1.6644 1.0147 15 1 9.9615 2.2370 0.1836 16 6 10.4044 0.7960 1.6949 17 7 11.6620 0.6661 1.3325 18 14 9.7393 -0.1950 3.1319 19 1 9.2030 -1.4877 2.6355 20 1 10.8324 -0.4529 4.1035 21 1 8.6539 0.5678 3.7990 22 6 5.4966 5.3054 0.4270 23 6 4.5607 6.1808 -0.4148 24 6 3.1224 5.8989 0.0145 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.1624 2.3591 -0.0033 29 1 0.7317 4.7470 0.0013 30 1 4.3244 1.3896 -0.0002 31 1 5.9717 3.3162 1.8720 32 1 7.4914 2.4831 -0.5131 33 1 7.9492 3.7932 0.6014 34 1 8.0903 2.1607 2.4625 35 1 7.6324 0.8506 1.3480 36 1 12.2441 0.0555 1.8113 37 1 5.2462 5.4099 1.4827 38 1 6.5304 5.6095 0.2626 39 1 4.7939 7.2327 -0.2490 40 1 4.6829 5.9392 -1.4706 41 1 2.4381 6.3960 -0.6732 42 1 2.9655 6.2871 1.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564972670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:14 Heat of formation + Delta-G solvation = 5.138117 kcal Electronic energy + Delta-G solvation = -20604.752006 eV Core-core repulsion = 17674.571722 eV Total energy + Delta-G solvation = -2930.180284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.13918 -36.92293 -35.01314 -33.03251 -31.58311 -30.68675 -29.68765 -28.90566 -27.50385 -24.24498 -23.04828 -22.84363 -21.59752 -20.49433 -19.58793 -17.30712 -16.77382 -16.16687 -15.72090 -15.13234 -14.88464 -14.48287 -14.30311 -14.03234 -13.90281 -13.75837 -13.37518 -13.30210 -13.08261 -12.64931 -12.48448 -12.46077 -12.13583 -11.69355 -11.67651 -11.35227 -11.20259 -11.02484 -10.78503 -10.49856 -10.26186 -10.15315 -9.76616 -9.67757 -9.45009 -9.20238 -8.71891 -8.50888 -7.92782 -7.37487 -6.02089 -4.00356 1.19240 1.39990 1.46124 2.35201 3.35977 3.42617 3.47964 3.63837 4.46964 4.49093 4.57669 4.73101 4.81759 4.82733 4.86404 4.97903 5.02036 5.05871 5.26220 5.32854 5.39728 5.46466 5.48352 5.58840 5.70913 5.76401 5.85771 5.90937 6.02153 6.04877 6.18625 6.21873 6.27038 6.33745 6.46346 6.67628 6.79607 6.94855 7.16353 7.41181 7.60645 7.76334 7.91479 8.55215 9.01937 9.60625 11.11245 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.004277 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.943376 B = 6545.053656 C = 8297.925794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.118 6.118 3 C -0.096 4.096 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.080 4.080 7 C -0.046 4.046 8 C -0.062 4.062 9 C 0.125 3.875 10 H 0.088 0.912 11 N -0.687 5.687 12 C 0.074 3.926 13 C -0.009 4.009 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.078 4.078 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.339 0.661 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.013 0.987 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.511 7.835 -3.057 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.124 5.876 3 C -0.208 4.208 4 C -0.159 4.159 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.049 4.049 8 C -0.086 4.086 9 C 0.014 3.986 10 H 0.106 0.894 11 N -0.316 5.316 12 C -0.054 4.054 13 C -0.047 4.047 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.134 4.134 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.187 4.187 23 C -0.154 4.154 24 C -0.115 4.115 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.890 6.062 -3.324 24.870 hybrid contribution -0.755 1.341 1.033 1.854 sum -24.645 7.403 -2.291 25.834 Atomic orbital electron populations 1.23640 0.95683 1.06790 1.05315 1.85712 1.05303 1.03684 1.92894 1.21660 0.96883 0.96048 1.06238 1.20979 0.97806 0.93169 1.03918 1.20915 0.95707 0.95147 1.01361 1.19666 0.92566 0.95241 1.00834 1.19570 0.94598 0.92169 0.98577 1.20912 0.93973 0.96299 0.97382 1.20360 0.90079 0.90077 0.98039 0.89381 1.60641 1.14804 1.50923 1.05240 1.22004 0.84536 0.98565 1.00275 1.19527 0.95704 0.94657 0.94771 1.21073 0.93017 1.24775 1.17073 0.91153 1.25001 0.94681 0.96519 0.97176 1.69920 1.05344 1.37695 1.41400 0.86744 0.78693 0.80910 0.82735 1.20207 1.21548 1.18965 1.22293 1.00153 0.95958 1.00255 1.21503 0.94139 0.99573 1.00188 1.20457 0.97371 0.91822 1.01804 0.87643 0.89999 0.90023 0.86383 0.86278 0.84206 0.84350 0.91762 0.95799 0.96854 0.96100 0.92755 0.91475 0.91091 0.91536 0.91528 0.91029 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.16 101.05 0.93 -0.21 16 2 S -0.12 -1.43 22.57 -107.50 -2.43 -3.86 16 3 C -0.10 -1.27 6.11 -39.14 -0.24 -1.51 16 4 C -0.14 -1.53 9.36 -39.47 -0.37 -1.90 16 5 C -0.11 -1.20 9.60 -39.47 -0.38 -1.58 16 6 C -0.08 -0.94 5.74 -104.53 -0.60 -1.54 16 7 C -0.05 -0.63 5.55 -104.63 -0.58 -1.21 16 8 C -0.06 -0.92 8.95 -39.23 -0.35 -1.27 16 9 C 0.12 1.73 2.47 -69.03 -0.17 1.56 16 10 H 0.09 1.28 7.68 -51.93 -0.40 0.88 16 11 N -0.69 -11.34 5.31 -108.13 -0.57 -11.92 16 12 C 0.07 1.46 5.45 -3.83 -0.02 1.44 16 13 C -0.01 -0.21 4.34 -27.88 -0.12 -0.33 16 14 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 18 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C -0.15 -1.74 5.26 -26.70 -0.14 -1.88 16 23 C -0.12 -1.12 5.98 -26.70 -0.16 -1.28 16 24 C -0.08 -0.72 5.67 -28.04 -0.16 -0.88 16 25 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.08 0.58 7.76 -51.92 -0.40 0.18 16 27 H 0.08 0.56 7.75 -51.92 -0.40 0.16 16 28 H 0.12 1.07 5.92 -52.49 -0.31 0.75 16 29 H 0.12 0.99 8.05 -52.49 -0.42 0.56 16 30 H 0.14 2.30 7.61 -52.48 -0.40 1.90 16 31 H 0.34 5.41 8.38 -39.29 -0.33 5.08 16 32 H 0.06 1.30 7.92 -51.93 -0.41 0.89 16 33 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 34 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 38 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -31.14 345.27 -11.26 -42.40 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.77 Total: 2.05 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.80 Total: -24.01 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.20 Total: -39.32 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.43 Total: -3.86 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.14 -11.26 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564972670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.535 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds