Wall clock time and date at job start Tue Mar 31 2020 07:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76193 * 103.00176 * 2 1 4 4 C 1.39003 * 120.20245 * 359.97438 * 3 2 1 5 5 C 1.37769 * 119.68997 * 179.87130 * 4 3 2 6 6 C 1.39006 * 120.65831 * 0.02562 * 5 4 3 7 7 C 1.37756 * 119.80643 * 0.18260 * 6 5 4 8 8 C 1.38672 * 120.20197 * 179.97438 * 3 2 1 9 9 C 1.50646 * 122.56187 * 179.66447 * 7 6 5 10 10 H 1.08995 * 109.22152 * 257.26887 * 9 7 6 11 11 N 1.46904 * 109.25138 * 137.82574 * 9 7 6 12 12 C 1.46895 * 111.00211 * 152.82027 * 11 9 7 13 13 C 1.52995 * 109.47089 * 185.18942 * 12 11 9 14 14 C 1.50706 * 109.46900 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99526 * 180.02562 * 14 13 12 17 17 N 1.31524 * 119.99741 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00439 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46764 * 90.00307 * 18 16 14 20 20 H 1.48503 * 109.47343 * 210.00334 * 18 16 14 21 21 H 1.48495 * 109.47218 * 330.00548 * 18 16 14 22 22 C 1.52726 * 110.60424 * 17.53827 * 9 7 6 23 23 C 1.53326 * 108.38155 * 308.96468 * 22 9 7 24 24 C 1.50658 * 117.65849 * 180.28947 * 6 5 4 25 25 H 1.09000 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46915 * 300.00237 * 1 2 3 27 27 H 1.09005 * 109.46869 * 59.99977 * 1 2 3 28 28 H 1.08002 * 120.15314 * 359.85666 * 4 3 2 29 29 H 1.08000 * 119.67097 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.75197 * 0.06802 * 8 3 2 31 31 H 1.00899 * 110.99927 * 276.77451 * 11 9 7 32 32 H 1.09004 * 109.47134 * 305.18863 * 12 11 9 33 33 H 1.08998 * 109.47054 * 65.18523 * 12 11 9 34 34 H 1.08998 * 109.47089 * 299.99509 * 13 12 11 35 35 H 1.08998 * 109.47514 * 59.99863 * 13 12 11 36 36 H 0.96996 * 120.00073 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.68166 * 68.68597 * 22 9 7 38 38 H 1.09004 * 109.68158 * 189.24155 * 22 9 7 39 39 H 1.09007 * 109.68597 * 189.66553 * 23 22 9 40 40 H 1.09002 * 109.68331 * 310.22122 * 23 22 9 41 41 H 1.09004 * 109.25768 * 317.83260 * 24 6 5 42 42 H 1.09001 * 109.25613 * 77.30253 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1972 2.6684 -0.0005 5 6 1.5191 4.0079 0.0022 6 6 2.8474 4.4177 0.0049 7 6 3.8541 3.4773 0.0011 8 6 3.5351 2.1268 0.0005 9 6 5.3133 3.8517 -0.0037 10 1 5.7138 3.7216 -1.0090 11 7 6.0411 2.9761 0.9246 12 6 7.4454 2.8302 0.5192 13 6 8.1362 1.8136 1.4302 14 6 9.5772 1.6644 1.0147 15 1 9.9615 2.2370 0.1836 16 6 10.4044 0.7960 1.6949 17 7 11.6620 0.6661 1.3325 18 14 9.7393 -0.1950 3.1319 19 1 9.2030 -1.4877 2.6355 20 1 10.8324 -0.4529 4.1035 21 1 8.6539 0.5678 3.7990 22 6 5.4966 5.3054 0.4270 23 6 4.5607 6.1808 -0.4148 24 6 3.1224 5.8989 0.0145 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.1624 2.3591 -0.0033 29 1 0.7317 4.7470 0.0013 30 1 4.3244 1.3896 -0.0002 31 1 5.9717 3.3162 1.8720 32 1 7.4914 2.4831 -0.5131 33 1 7.9492 3.7932 0.6014 34 1 8.0903 2.1607 2.4625 35 1 7.6324 0.8506 1.3480 36 1 12.2441 0.0555 1.8113 37 1 5.2462 5.4099 1.4827 38 1 6.5304 5.6095 0.2626 39 1 4.7939 7.2327 -0.2490 40 1 4.6829 5.9392 -1.4706 41 1 2.4381 6.3960 -0.6732 42 1 2.9655 6.2871 1.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564972670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:11 Heat of formation + Delta-G solvation = -12.366635 kcal Electronic energy + Delta-G solvation = -20605.511069 eV Core-core repulsion = 17674.571722 eV Total energy + Delta-G solvation = -2930.939347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.09433 -38.07941 -36.24702 -34.91456 -33.06323 -31.56619 -31.10477 -29.62514 -28.72391 -25.92159 -24.13265 -23.76308 -22.62583 -22.33867 -20.52365 -18.97985 -18.27198 -17.13377 -16.72299 -16.37967 -16.21324 -15.98459 -15.33743 -15.24896 -14.93886 -14.72736 -14.67104 -14.32885 -14.14873 -14.06462 -13.68816 -13.46547 -13.27103 -13.01905 -12.93170 -12.62120 -12.57257 -12.18284 -12.00846 -11.85329 -11.76241 -11.51922 -11.42258 -11.20742 -11.07808 -10.78151 -10.31524 -9.70460 -9.27188 -8.31292 -8.30478 -6.35398 0.26970 0.45443 0.63255 1.36089 1.36556 1.49510 1.56308 2.35250 2.69125 3.04487 3.27628 3.66263 3.84497 3.97002 4.07206 4.13480 4.23598 4.27224 4.29407 4.31903 4.39533 4.49550 4.53957 4.68020 4.72507 4.82056 4.83384 4.95920 4.96622 5.00678 5.05398 5.11985 5.21350 5.28338 5.38380 5.38703 5.47400 5.53221 5.61811 5.73075 6.00437 6.16342 6.24925 6.51084 6.72915 7.29583 8.85393 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.004277 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.943376 B = 6545.053656 C = 8297.925794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.178 6.178 3 C -0.103 4.103 4 C -0.133 4.133 5 C -0.107 4.107 6 C -0.082 4.082 7 C -0.061 4.061 8 C -0.089 4.089 9 C 0.127 3.873 10 H 0.074 0.926 11 N -0.688 5.688 12 C 0.091 3.909 13 C -0.002 4.002 14 C -0.533 4.533 15 H 0.033 0.967 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.951 3.049 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.249 1.249 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.074 4.074 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.109 0.891 31 H 0.343 0.657 32 H 0.052 0.948 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.267 0.733 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.227 9.164 -2.047 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.064 5.936 3 C -0.215 4.215 4 C -0.157 4.157 5 C -0.126 4.126 6 C -0.085 4.085 7 C -0.064 4.064 8 C -0.113 4.113 9 C 0.017 3.983 10 H 0.092 0.908 11 N -0.318 5.318 12 C -0.037 4.037 13 C -0.040 4.040 14 C -0.571 4.571 15 H 0.052 0.948 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.173 1.173 22 C -0.182 4.182 23 C -0.150 4.150 24 C -0.111 4.111 25 H 0.140 0.860 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.163 0.837 29 H 0.172 0.828 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.625 7.411 -2.322 28.696 hybrid contribution 0.361 0.945 0.628 1.191 sum -27.264 8.356 -1.694 28.565 Atomic orbital electron populations 1.23721 0.91116 1.08330 1.06525 1.85885 1.10415 1.04308 1.93040 1.21723 0.96756 0.96534 1.06514 1.21339 0.98558 0.93122 1.02656 1.21327 0.96074 0.95631 0.99603 1.19979 0.92534 0.96262 0.99681 1.19531 0.94525 0.92255 1.00044 1.20786 0.94245 0.96381 0.99840 1.20350 0.90281 0.91059 0.96583 0.90840 1.60506 1.12575 1.52680 1.06017 1.21617 0.86346 0.97192 0.98592 1.19405 0.93200 0.95668 0.95735 1.21405 0.95471 1.24194 1.16039 0.94829 1.25952 0.94828 0.97784 1.00346 1.70060 1.06901 1.38897 1.43178 0.85640 0.78538 0.79289 0.79035 1.19544 1.20686 1.17256 1.22224 1.00384 0.94701 1.00908 1.21498 0.94024 1.00082 0.99411 1.20522 0.97281 0.90126 1.03181 0.85971 0.88775 0.88651 0.83731 0.82819 0.87286 0.83850 0.92955 0.95883 0.96281 0.96565 0.92415 0.91095 0.92045 0.89538 0.91915 0.88598 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.16 113.37 1.04 -0.64 16 2 S -0.18 -4.30 22.57 -56.49 -1.27 -5.58 16 3 C -0.10 -2.68 6.11 22.56 0.14 -2.54 16 4 C -0.13 -2.65 9.36 22.34 0.21 -2.44 16 5 C -0.11 -1.91 9.60 22.34 0.21 -1.70 16 6 C -0.08 -1.70 5.74 -19.81 -0.11 -1.82 16 7 C -0.06 -1.64 5.55 -19.87 -0.11 -1.75 16 8 C -0.09 -2.69 8.95 22.50 0.20 -2.49 16 9 C 0.13 3.58 2.47 44.06 0.11 3.69 16 10 H 0.07 2.24 7.68 -2.39 -0.02 2.22 16 11 N -0.69 -23.25 5.31 -496.03 -2.64 -25.89 16 12 C 0.09 3.74 5.45 86.30 0.47 4.21 16 13 C 0.00 -0.11 4.34 29.85 0.13 0.02 16 14 C -0.53 -31.68 9.66 25.60 0.25 -31.43 16 15 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 16 C 0.01 0.48 5.47 84.65 0.46 0.94 16 17 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 18 Si 0.95 46.12 27.47 68.60 1.88 48.01 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 22 C -0.14 -3.24 5.26 30.61 0.16 -3.08 16 23 C -0.11 -1.90 5.98 30.61 0.18 -1.71 16 24 C -0.07 -1.11 5.67 29.75 0.17 -0.94 16 25 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.02 7.76 -2.39 -0.02 1.00 16 27 H 0.09 1.00 7.75 -2.39 -0.02 0.99 16 28 H 0.15 2.02 5.92 -2.91 -0.02 2.01 16 29 H 0.15 1.69 8.05 -2.91 -0.02 1.67 16 30 H 0.11 3.88 7.61 -2.91 -0.02 3.86 16 31 H 0.34 10.97 8.38 -89.69 -0.75 10.22 16 32 H 0.05 2.24 7.92 -2.39 -0.02 2.22 16 33 H 0.02 0.93 7.86 -2.39 -0.02 0.91 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 35 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.07 1.56 7.91 -2.39 -0.02 1.54 16 38 H 0.06 1.49 7.88 -2.38 -0.02 1.48 16 39 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.10 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.23 345.27 1.98 -68.26 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.19 Total: 17.38 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.51 Total: -41.68 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.34 Total: -86.39 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -1.27 Total: -5.58 kcal Total: -70.23 1.98 -68.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564972670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.893 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds