Wall clock time and date at job start Tue Mar 31 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47532 * 2 1 4 4 C 1.53004 * 109.46977 * 239.99949 * 2 1 3 5 5 C 1.53002 * 109.47081 * 120.00382 * 2 1 3 6 6 N 1.46893 * 109.47311 * 53.23630 * 5 2 1 7 7 C 1.46905 * 110.99774 * 197.58777 * 6 5 2 8 8 C 1.50698 * 109.46774 * 66.04997 * 7 6 5 9 9 H 1.07995 * 120.00182 * 0.27299 * 8 7 6 10 10 C 1.37878 * 119.99663 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00316 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00026 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47134 * 60.00178 * 12 10 8 14 14 H 1.48502 * 109.46965 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46643 * 299.99896 * 12 10 8 16 16 C 1.38714 * 110.99908 * 73.63773 * 6 5 2 17 17 N 1.32512 * 119.55439 * 33.17153 * 16 6 5 18 18 C 1.31677 * 121.80917 * 179.71279 * 17 16 6 19 19 C 1.39567 * 120.67974 * 0.56156 * 18 17 16 20 20 C 1.43196 * 120.47852 * 179.75193 * 19 18 17 21 21 N 7.40302 * 110.96295 * 207.34820 * 2 1 3 22 22 C 1.40362 * 119.04395 * 359.72670 * 19 18 17 23 23 C 1.38053 * 118.35313 * 359.97438 * 22 19 18 24 24 F 1.35100 * 120.39559 * 179.97438 * 23 22 19 25 25 H 1.09007 * 109.47027 * 300.00247 * 1 2 3 26 26 H 1.09004 * 109.47283 * 59.99706 * 1 2 3 27 27 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47650 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46784 * 299.99985 * 3 2 1 30 30 H 1.08999 * 109.46970 * 60.00095 * 3 2 1 31 31 H 1.08995 * 109.47125 * 306.74965 * 4 2 1 32 32 H 1.08997 * 109.47298 * 66.75066 * 4 2 1 33 33 H 1.09006 * 109.47188 * 186.75223 * 4 2 1 34 34 H 1.08999 * 109.46701 * 293.23337 * 5 2 1 35 35 H 1.09001 * 109.46780 * 173.24301 * 5 2 1 36 36 H 1.08998 * 109.47310 * 306.04652 * 7 6 5 37 37 H 1.09000 * 109.46935 * 186.04594 * 7 6 5 38 38 H 0.96995 * 120.00271 * 179.97438 * 11 10 8 39 39 H 1.08000 * 119.66240 * 180.26793 * 18 17 16 40 40 H 1.08002 * 120.82279 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.4217 -2.0512 1.3335 7 6 1.5439 -2.6035 2.6892 8 6 0.7322 -1.7694 3.6465 9 1 0.1771 -0.9172 3.2833 10 6 0.6932 -2.0981 4.9849 11 7 1.3648 -3.1391 5.4264 12 14 -0.3125 -1.0638 6.1717 13 1 -1.7382 -1.0798 5.7567 14 1 -0.1890 -1.6223 7.5422 15 1 0.1909 0.3333 6.1598 16 6 1.9677 -2.9136 0.3943 17 7 3.2440 -2.7919 0.0591 18 6 3.8091 -3.5898 -0.8228 19 6 3.0710 -4.5947 -1.4499 20 6 3.6886 -5.4566 -2.4123 21 7 4.1785 -6.1404 -3.1758 22 6 1.7146 -4.7487 -1.1232 23 6 1.1642 -3.8944 -0.1888 24 9 -0.1373 -4.0054 0.1561 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.5814 -1.7081 -1.3117 32 1 1.7786 -0.1425 -2.1351 33 1 3.1233 -0.8271 -1.1909 34 1 1.7788 -0.1424 2.1350 35 1 3.1233 -0.8272 1.1908 36 1 2.5905 -2.5910 2.9937 37 1 1.1752 -3.6292 2.6983 38 1 1.3376 -3.3700 6.3680 39 1 4.8534 -3.4624 -1.0670 40 1 1.1165 -5.5170 -1.5906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565230091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:37 Heat of formation + Delta-G solvation = 30.336185 kcal Electronic energy + Delta-G solvation = -23920.983455 eV Core-core repulsion = 20457.975416 eV Total energy + Delta-G solvation = -3463.008039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.56092 -40.68111 -38.01864 -36.50741 -34.99822 -32.83978 -32.21235 -30.34438 -27.35989 -26.86871 -26.78774 -25.77334 -23.73381 -23.41010 -21.29498 -19.29129 -18.64494 -17.47163 -16.77135 -16.33084 -16.02704 -15.70159 -14.86235 -14.53027 -14.38026 -14.13018 -14.02337 -13.67540 -13.48489 -13.18919 -13.14850 -12.97679 -12.66487 -12.43044 -12.22331 -12.02774 -11.92346 -11.58499 -11.28658 -11.08403 -10.95067 -10.83566 -10.49245 -10.30768 -10.15936 -10.03034 -9.86822 -9.73563 -9.38081 -8.80240 -8.53728 -7.64673 -6.15817 -4.18714 0.50791 1.05835 2.49957 2.84403 3.27833 3.32592 3.34674 3.59915 3.73859 3.95371 4.33632 4.45569 4.52028 4.61241 4.99698 5.17798 5.20469 5.24371 5.31808 5.47873 5.62105 5.76864 5.85746 5.88367 5.95760 6.05620 6.17836 6.25621 6.29130 6.30796 6.46738 6.49338 6.66356 6.75609 6.89065 7.00974 7.07802 7.31572 7.53784 7.62619 7.88341 7.95908 8.25238 8.86268 9.45771 10.94974 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.005635 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.987831 B = 4967.828649 C = 5949.324306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.067 3.933 6 N -0.477 5.477 7 C 0.205 3.795 8 C -0.514 4.514 9 H 0.068 0.932 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.344 3.656 17 N -0.491 5.491 18 C 0.164 3.836 19 C -0.099 4.099 20 C 0.270 3.730 21 N -0.423 5.423 22 C -0.057 4.057 23 C 0.053 3.947 24 F -0.111 7.111 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.011 0.989 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.166 0.834 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 2.846 -11.972 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.060 4.060 6 N -0.196 5.196 7 C 0.083 3.917 8 C -0.552 4.552 9 H 0.087 0.913 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.729 3.271 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.201 1.201 16 C 0.112 3.888 17 N -0.204 5.204 18 C 0.001 3.999 19 C -0.106 4.106 20 C -0.046 4.046 21 N -0.099 5.099 22 C -0.086 4.086 23 C 0.029 3.971 24 F -0.090 7.090 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.183 0.817 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.418 2.418 -12.579 13.036 hybrid contribution -0.715 -0.110 0.827 1.099 sum 1.703 2.308 -11.752 12.097 Atomic orbital electron populations 1.21718 0.94099 1.02668 1.00188 1.20589 0.96417 0.94756 0.95044 1.21791 1.00675 0.95516 1.01378 1.22166 1.01022 0.99717 0.96939 1.22227 0.97506 0.88174 0.98086 1.60011 1.50880 1.01755 1.07003 1.19896 0.96991 0.96086 0.78694 1.20989 1.29472 1.13230 0.91508 0.91343 1.24951 0.95663 0.95295 0.98250 1.69936 1.41512 1.26351 1.15520 0.86506 0.80668 0.80281 0.79690 1.20021 1.21300 1.20104 1.20575 0.86434 0.89329 0.92460 1.68140 1.10406 1.26843 1.14964 1.22754 0.99769 0.87950 0.89417 1.16622 0.93666 0.99377 1.00900 1.25277 0.93550 0.92981 0.92747 1.81254 1.08253 1.09676 1.10681 1.21440 0.93825 0.97926 0.95391 1.17994 0.80650 0.99452 0.99036 1.91574 1.31450 1.95164 1.90764 0.92709 0.94416 0.91471 0.92943 0.93152 0.92510 0.93442 0.93702 0.92102 0.88741 0.92379 0.97140 0.94790 0.92591 0.81672 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.24 37.16 0.31 -1.65 16 2 C -0.07 -0.99 0.84 -154.51 -0.13 -1.12 16 3 C -0.14 -1.71 8.47 37.16 0.31 -1.40 16 4 C -0.14 -1.92 6.94 37.16 0.26 -1.66 16 5 C 0.07 1.18 3.90 -3.83 -0.01 1.17 16 6 N -0.48 -9.28 3.19 -174.49 -0.56 -9.84 16 7 C 0.20 4.91 4.66 -4.97 -0.02 4.89 16 8 C -0.51 -13.27 8.25 -34.44 -0.28 -13.55 16 9 H 0.07 1.73 7.29 -52.49 -0.38 1.35 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 12 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.34 5.84 3.01 -155.05 -0.47 5.37 16 17 N -0.49 -7.43 6.65 -12.06 -0.08 -7.51 16 18 C 0.16 1.95 10.91 -17.12 -0.19 1.76 16 19 C -0.10 -1.14 5.75 -106.68 -0.61 -1.75 16 20 C 0.27 3.21 15.37 -22.47 -0.35 2.86 16 21 N -0.42 -5.79 18.54 41.84 0.78 -5.02 16 22 C -0.06 -0.70 9.88 -38.85 -0.38 -1.08 16 23 C 0.05 0.83 6.75 -39.16 -0.26 0.56 16 24 F -0.11 -1.93 17.08 2.25 0.04 -1.89 16 25 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.13 7.43 -51.93 -0.39 0.75 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.69 5.20 -51.93 -0.27 0.42 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.81 7.12 -51.93 -0.37 0.44 16 34 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 35 H 0.06 1.03 6.98 -51.93 -0.36 0.67 16 36 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 37 H 0.03 0.89 8.05 -51.93 -0.42 0.47 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -27.90 338.09 -6.41 -34.31 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.47 Total: -2.15 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.93 Total: -4.07 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.87 Total: -46.83 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.90 -6.41 -34.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565230091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.648 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds