Wall clock time and date at job start Tue Mar 31 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47532 * 2 1 4 4 C 1.53004 * 109.46977 * 239.99949 * 2 1 3 5 5 C 1.53002 * 109.47081 * 120.00382 * 2 1 3 6 6 N 1.46893 * 109.47311 * 53.23630 * 5 2 1 7 7 C 1.46905 * 110.99774 * 197.58777 * 6 5 2 8 8 C 1.50698 * 109.46774 * 66.04997 * 7 6 5 9 9 H 1.07995 * 120.00182 * 0.27299 * 8 7 6 10 10 C 1.37878 * 119.99663 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00316 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00026 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47134 * 60.00178 * 12 10 8 14 14 H 1.48502 * 109.46965 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46643 * 299.99896 * 12 10 8 16 16 C 1.38714 * 110.99908 * 73.63773 * 6 5 2 17 17 N 1.32512 * 119.55439 * 33.17153 * 16 6 5 18 18 C 1.31677 * 121.80917 * 179.71279 * 17 16 6 19 19 C 1.39567 * 120.67974 * 0.56156 * 18 17 16 20 20 C 1.43196 * 120.47852 * 179.75193 * 19 18 17 21 21 N 7.40302 * 110.96295 * 207.34820 * 2 1 3 22 22 C 1.40362 * 119.04395 * 359.72670 * 19 18 17 23 23 C 1.38053 * 118.35313 * 359.97438 * 22 19 18 24 24 F 1.35100 * 120.39559 * 179.97438 * 23 22 19 25 25 H 1.09007 * 109.47027 * 300.00247 * 1 2 3 26 26 H 1.09004 * 109.47283 * 59.99706 * 1 2 3 27 27 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47650 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46784 * 299.99985 * 3 2 1 30 30 H 1.08999 * 109.46970 * 60.00095 * 3 2 1 31 31 H 1.08995 * 109.47125 * 306.74965 * 4 2 1 32 32 H 1.08997 * 109.47298 * 66.75066 * 4 2 1 33 33 H 1.09006 * 109.47188 * 186.75223 * 4 2 1 34 34 H 1.08999 * 109.46701 * 293.23337 * 5 2 1 35 35 H 1.09001 * 109.46780 * 173.24301 * 5 2 1 36 36 H 1.08998 * 109.47310 * 306.04652 * 7 6 5 37 37 H 1.09000 * 109.46935 * 186.04594 * 7 6 5 38 38 H 0.96995 * 120.00271 * 179.97438 * 11 10 8 39 39 H 1.08000 * 119.66240 * 180.26793 * 18 17 16 40 40 H 1.08002 * 120.82279 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.4217 -2.0512 1.3335 7 6 1.5439 -2.6035 2.6892 8 6 0.7322 -1.7694 3.6465 9 1 0.1771 -0.9172 3.2833 10 6 0.6932 -2.0981 4.9849 11 7 1.3648 -3.1391 5.4264 12 14 -0.3125 -1.0638 6.1717 13 1 -1.7382 -1.0798 5.7567 14 1 -0.1890 -1.6223 7.5422 15 1 0.1909 0.3333 6.1598 16 6 1.9677 -2.9136 0.3943 17 7 3.2440 -2.7919 0.0591 18 6 3.8091 -3.5898 -0.8228 19 6 3.0710 -4.5947 -1.4499 20 6 3.6886 -5.4566 -2.4123 21 7 4.1785 -6.1404 -3.1758 22 6 1.7146 -4.7487 -1.1232 23 6 1.1642 -3.8944 -0.1888 24 9 -0.1373 -4.0054 0.1561 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.5814 -1.7081 -1.3117 32 1 1.7786 -0.1425 -2.1351 33 1 3.1233 -0.8271 -1.1909 34 1 1.7788 -0.1424 2.1350 35 1 3.1233 -0.8272 1.1908 36 1 2.5905 -2.5910 2.9937 37 1 1.1752 -3.6292 2.6983 38 1 1.3376 -3.3700 6.3680 39 1 4.8534 -3.4624 -1.0670 40 1 1.1165 -5.5170 -1.5906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565230091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:34 Heat of formation + Delta-G solvation = 16.133610 kcal Electronic energy + Delta-G solvation = -23921.599325 eV Core-core repulsion = 20457.975416 eV Total energy + Delta-G solvation = -3463.623909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.82973 -41.89333 -39.26401 -37.58833 -36.39852 -34.64552 -33.46354 -31.62240 -29.07711 -28.01902 -27.96420 -27.09608 -25.17053 -24.68996 -22.85392 -20.41333 -19.88204 -18.77935 -18.36597 -17.79069 -17.22994 -17.12464 -16.51602 -15.82549 -15.67409 -15.53796 -15.10964 -14.89644 -14.57338 -14.39514 -14.33643 -14.22816 -14.01757 -13.95703 -13.67406 -13.36042 -13.07450 -12.86244 -12.76643 -12.67440 -12.43309 -12.30636 -12.08656 -11.71794 -11.51657 -11.41660 -11.29775 -10.90488 -10.84645 -10.60372 -10.06156 -9.09671 -8.21344 -6.30715 -0.62041 -0.02305 1.44521 1.46814 1.49452 1.54343 1.76656 2.37628 2.50363 2.66778 2.78733 3.13353 3.25201 3.39637 3.63301 3.82788 4.01091 4.07710 4.17840 4.34607 4.56231 4.67090 4.75382 4.79224 4.85996 4.90531 4.95060 5.01676 5.06689 5.12906 5.16520 5.21754 5.29352 5.37559 5.42125 5.59023 5.64859 5.68508 5.99303 6.00129 6.32681 6.52965 6.72577 6.81905 7.38201 8.89990 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.005635 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.987831 B = 4967.828649 C = 5949.324306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.133 4.133 5 C 0.072 3.928 6 N -0.483 5.483 7 C 0.226 3.774 8 C -0.521 4.521 9 H 0.069 0.931 10 C 0.009 3.991 11 N -0.932 5.932 12 Si 0.966 3.034 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.320 3.680 17 N -0.504 5.504 18 C 0.172 3.828 19 C -0.077 4.077 20 C 0.294 3.706 21 N -0.444 5.444 22 C -0.035 4.035 23 C 0.032 3.968 24 F -0.128 7.128 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.053 0.947 36 H -0.021 1.021 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.202 0.798 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 3.446 -13.910 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.190 4.190 5 C -0.054 4.054 6 N -0.203 5.203 7 C 0.102 3.898 8 C -0.559 4.559 9 H 0.087 0.913 10 C -0.190 4.190 11 N -0.572 5.572 12 Si 0.790 3.210 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.190 1.190 16 C 0.089 3.911 17 N -0.216 5.216 18 C 0.009 3.991 19 C -0.084 4.084 20 C -0.021 4.021 21 N -0.119 5.119 22 C -0.064 4.064 23 C 0.008 3.992 24 F -0.106 7.106 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.071 0.929 36 H -0.003 1.003 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.219 0.781 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.749 3.028 -14.553 15.116 hybrid contribution -0.714 -0.396 1.298 1.534 sum 2.036 2.632 -13.254 13.666 Atomic orbital electron populations 1.21650 0.94511 1.01323 1.00637 1.20570 0.96018 0.95828 0.94024 1.21752 1.01062 0.93931 1.02120 1.22073 1.00943 0.99272 0.96759 1.22179 0.97150 0.87413 0.98704 1.59820 1.52574 1.02736 1.05160 1.19359 0.94401 0.94399 0.81595 1.21295 1.29173 1.13205 0.92197 0.91322 1.25809 0.96711 0.96371 1.00063 1.70064 1.43174 1.28089 1.15832 0.85486 0.79193 0.78988 0.77297 1.19443 1.21087 1.19017 1.20457 0.87533 0.90245 0.92855 1.68096 1.09699 1.27832 1.15935 1.23317 1.01101 0.86819 0.87863 1.16554 0.93215 0.98660 0.99966 1.24958 0.92814 0.92293 0.92080 1.81310 1.09004 1.10306 1.11329 1.21699 0.94170 0.97052 0.93451 1.18192 0.80171 1.00352 1.00495 1.91526 1.32579 1.95354 1.91184 0.94007 0.92104 0.93690 0.92321 0.91118 0.93049 0.94464 0.91849 0.91890 0.91476 0.92916 1.00322 0.97859 0.92612 0.78140 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 8.24 71.98 0.59 -3.11 16 2 C -0.06 -1.83 0.84 -52.18 -0.04 -1.87 16 3 C -0.13 -3.08 8.47 71.98 0.61 -2.47 16 4 C -0.13 -3.37 6.94 71.98 0.50 -2.87 16 5 C 0.07 2.63 3.90 86.31 0.34 2.97 16 6 N -0.48 -19.59 3.19 -705.97 -2.25 -21.84 16 7 C 0.23 11.47 4.66 85.56 0.40 11.87 16 8 C -0.52 -28.02 8.25 25.60 0.21 -27.81 16 9 H 0.07 3.61 7.29 -2.91 -0.02 3.59 16 10 C 0.01 0.51 5.46 84.65 0.46 0.97 16 11 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 12 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 C 0.32 10.97 3.01 133.23 0.40 11.37 16 17 N -0.50 -14.83 6.65 -192.05 -1.28 -16.11 16 18 C 0.17 3.65 10.91 85.04 0.93 4.58 16 19 C -0.08 -1.56 5.75 -21.20 -0.12 -1.68 16 20 C 0.29 6.01 15.37 88.33 1.36 7.37 16 21 N -0.44 -10.88 18.54 19.00 0.35 -10.53 16 22 C -0.04 -0.78 9.88 22.74 0.22 -0.56 16 23 C 0.03 0.98 6.75 22.54 0.15 1.14 16 24 F -0.13 -4.54 17.08 44.97 0.77 -3.77 16 25 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.04 1.53 7.43 -2.39 -0.02 1.52 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.02 5.20 -2.39 -0.01 1.01 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.55 7.12 -2.38 -0.02 1.53 16 34 H 0.07 2.75 6.58 -2.39 -0.02 2.73 16 35 H 0.05 1.92 6.98 -2.39 -0.02 1.91 16 36 H -0.02 -1.17 8.12 -2.39 -0.02 -1.19 16 37 H 0.00 0.19 8.05 -2.39 -0.02 0.17 16 38 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -62.93 338.09 6.95 -55.98 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.05 Total: 5.54 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.01 Total: -0.10 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -2.89 Total: -102.51 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.77 Total: -3.77 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -62.93 6.95 -55.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565230091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.109 kcal (2) G-P(sol) polarization free energy of solvation -62.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds