Wall clock time and date at job start Tue Mar 31 2020 08:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48507 * 109.47044 * 270.00196 * 3 2 1 5 5 H 1.48498 * 109.47129 * 30.00308 * 3 2 1 6 6 H 1.48500 * 109.47279 * 150.00298 * 3 2 1 7 7 C 1.37877 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47040 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.35897 * 117.00230 * 179.97438 * 11 10 9 13 13 C 1.38816 * 120.01590 * 0.02562 * 12 11 10 14 14 C 1.38180 * 120.09275 * 179.97438 * 13 12 11 15 15 C 1.38155 * 120.12805 * 0.02562 * 14 13 12 16 16 C 1.38937 * 120.03273 * 359.97438 * 15 14 13 17 17 N 1.39675 * 120.04129 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.46708 * 180.02562 * 18 17 16 20 20 O 1.42894 * 112.85434 * 53.80055 * 19 18 17 21 21 C 1.53787 * 113.61241 * 282.49295 * 19 18 17 22 22 C 1.53779 * 87.08104 * 220.02434 * 21 19 18 23 23 C 1.53778 * 87.08482 * 25.43150 * 22 21 19 24 24 C 1.38574 * 120.02243 * 180.25363 * 12 11 10 25 25 H 0.96997 * 120.00202 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47168 * 59.99786 * 9 7 2 27 27 H 1.08996 * 109.46794 * 300.00338 * 9 7 2 28 28 H 1.09001 * 109.47426 * 59.99808 * 10 9 7 29 29 H 1.09005 * 109.47345 * 299.99495 * 10 9 7 30 30 H 1.07998 * 119.95178 * 359.97438 * 13 12 11 31 31 H 1.07994 * 119.93484 * 179.97438 * 14 13 12 32 32 H 1.07997 * 119.98685 * 180.02562 * 15 14 13 33 33 H 0.97005 * 119.99698 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47134 * 299.99404 * 18 17 16 35 35 H 1.08994 * 109.47397 * 59.99696 * 18 17 16 36 36 H 0.96699 * 114.00237 * 309.66743 * 20 19 18 37 37 H 1.09005 * 113.61371 * 334.56748 * 21 19 18 38 38 H 1.09001 * 113.61328 * 105.47412 * 21 19 18 39 39 H 1.09003 * 113.61412 * 270.88626 * 22 21 19 40 40 H 1.09000 * 113.61968 * 139.98262 * 22 21 19 41 41 H 1.09001 * 113.61785 * 220.02198 * 23 22 21 42 42 H 1.09001 * 113.61692 * 89.11531 * 23 22 21 43 43 H 1.08006 * 120.06187 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5309 -4.8996 0.0001 12 6 2.2710 -6.0393 -0.0004 13 6 3.6573 -5.9670 -0.0009 14 6 4.4115 -7.1249 -0.0008 15 6 3.7887 -8.3581 -0.0008 16 6 2.4015 -8.4366 -0.0003 17 7 1.7717 -9.6833 -0.0009 18 6 2.5738 -10.9092 -0.0014 19 6 1.6458 -12.1257 -0.0025 20 8 0.6913 -12.0945 -1.0655 21 6 1.0293 -12.4315 1.3728 22 6 1.2549 -13.9192 1.0555 23 6 2.3882 -13.4669 0.1197 24 6 1.6424 -7.2742 -0.0052 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 4.1471 -5.0045 -0.0013 31 1 5.4898 -7.0657 -0.0016 32 1 4.3803 -9.2616 -0.0003 33 1 0.8031 -9.7373 -0.0009 34 1 3.2026 -10.9315 -0.8914 35 1 3.2027 -10.9323 0.8885 36 1 0.2045 -11.2617 -1.1327 37 1 1.6261 -12.0681 2.2094 38 1 -0.0225 -12.1562 1.4507 39 1 0.4190 -14.3863 0.5348 40 1 1.6004 -14.5005 1.9104 41 1 2.4335 -14.0275 -0.8140 42 1 3.3566 -13.3865 0.6136 43 1 0.5639 -7.3324 -0.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565594524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:01 Heat of formation + Delta-G solvation = -49.094783 kcal Electronic energy + Delta-G solvation = -22097.452547 eV Core-core repulsion = 18722.167677 eV Total energy + Delta-G solvation = -3375.284870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39091 -39.60002 -37.60641 -35.21957 -34.68253 -33.33167 -30.94735 -30.05455 -28.85215 -27.20769 -26.13690 -24.96427 -23.31764 -22.54120 -21.39937 -20.34376 -20.14661 -18.19361 -17.36426 -16.35631 -16.18619 -15.73808 -15.66815 -15.28776 -15.26050 -14.84451 -14.73463 -14.53795 -14.22799 -13.54718 -13.38412 -12.88123 -12.83428 -12.64367 -12.31292 -12.28149 -11.68894 -11.54191 -11.51031 -11.32638 -11.23265 -10.90886 -10.77701 -10.68526 -10.44746 -10.17358 -9.99679 -9.73933 -9.63483 -9.28312 -8.44080 -7.97324 -7.39603 -6.09186 -4.13615 1.68647 1.84038 3.06890 3.28272 3.34223 3.37249 3.52683 3.96308 4.03937 4.10367 4.23277 4.28529 4.39116 4.43406 4.92778 5.06085 5.12398 5.22637 5.26441 5.27203 5.30109 5.35062 5.48060 5.52030 5.52442 5.59164 5.74570 5.75980 5.88342 6.06984 6.08278 6.08676 6.35595 6.60031 6.65285 6.71531 6.86568 7.11576 7.31824 7.50618 7.57069 7.66115 7.84207 8.11211 8.25824 8.92064 9.50546 11.02419 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041978 B = 0.002266 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.852787 B =12356.080073 C =12785.545064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.188 3.812 13 C -0.262 4.262 14 C -0.037 4.037 15 C -0.243 4.243 16 C 0.245 3.755 17 N -0.749 5.749 18 C 0.112 3.888 19 C 0.096 3.904 20 O -0.538 6.538 21 C -0.165 4.165 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.236 4.236 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.394 0.606 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.379 0.621 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -26.572 1.464 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.139 3.861 13 C -0.282 4.282 14 C -0.056 4.056 15 C -0.265 4.265 16 C 0.143 3.857 17 N -0.382 5.382 18 C -0.013 4.013 19 C 0.054 3.946 20 O -0.344 6.344 21 C -0.202 4.202 22 C -0.173 4.173 23 C -0.161 4.161 24 C -0.260 4.260 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.228 0.772 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.403 -27.159 1.368 27.725 hybrid contribution 0.082 1.623 0.095 1.627 sum 5.485 -25.536 1.463 26.159 Atomic orbital electron populations 1.69975 1.06100 1.26944 1.49782 1.24996 0.94914 0.99394 0.94956 0.86483 0.79736 0.82929 0.78209 1.20503 1.21073 1.19759 1.20976 0.93065 0.90212 1.52113 0.92341 1.19129 0.94206 0.89078 0.98829 1.23322 0.97004 0.80689 0.99771 1.86148 1.36762 1.13309 1.86654 1.18821 0.89867 0.86843 0.90521 1.21172 0.93015 0.99663 1.14384 1.20625 0.99045 0.91434 0.94477 1.20380 0.92186 0.97900 1.16042 1.17307 0.91501 0.84302 0.92543 1.44382 1.07769 1.02235 1.83780 1.21861 0.94205 0.83138 1.02067 1.22503 0.89912 0.94610 0.87558 1.86505 1.54624 1.41410 1.51842 1.23631 1.02100 0.97150 0.97343 1.22759 0.98850 0.96239 0.99408 1.22990 0.98094 0.94165 1.00852 1.19662 0.99621 0.88895 1.17785 0.92727 0.95426 0.95433 0.93073 0.93062 0.85516 0.86296 0.86735 0.77112 0.91516 0.91193 0.77231 0.89083 0.90821 0.89749 0.91150 0.90241 0.88541 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.65 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.44 4.68 37.15 0.17 1.62 16 11 O -0.32 -6.64 10.13 -19.42 -0.20 -6.84 16 12 C 0.19 3.36 6.68 -39.24 -0.26 3.10 16 13 C -0.26 -4.24 9.04 -39.39 -0.36 -4.59 16 14 C -0.04 -0.50 10.03 -39.63 -0.40 -0.90 16 15 C -0.24 -3.06 9.31 -39.35 -0.37 -3.43 16 16 C 0.25 3.17 6.65 -83.81 -0.56 2.61 16 17 N -0.75 -7.08 5.51 -58.65 -0.32 -7.40 16 18 C 0.11 0.88 4.49 -4.04 -0.02 0.86 16 19 C 0.10 0.68 1.41 -89.80 -0.13 0.56 16 20 O -0.54 -4.51 13.41 -35.23 -0.47 -4.98 16 21 C -0.16 -1.07 7.47 -25.92 -0.19 -1.26 16 22 C -0.14 -0.83 8.02 -25.92 -0.21 -1.03 16 23 C -0.12 -0.76 7.47 -25.92 -0.19 -0.96 16 24 C -0.24 -3.63 9.83 -39.24 -0.39 -4.02 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 29 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 30 H 0.13 2.03 6.29 -52.49 -0.33 1.70 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.11 1.19 6.72 -52.49 -0.35 0.84 16 33 H 0.39 3.14 7.34 -40.82 -0.30 2.84 16 34 H 0.07 0.56 7.95 -51.93 -0.41 0.15 16 35 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 36 H 0.38 2.30 7.62 45.56 0.35 2.65 16 37 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.46 8.10 -51.93 -0.42 0.03 16 43 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -31.56 354.45 -9.40 -40.96 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.01 Total: 2.85 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.45 Total: -20.41 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.41 Total: -33.26 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.67 Total: -11.82 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.56 -9.40 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565594524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.139 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds