Wall clock time and date at job start Tue Mar 31 2020 08:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48507 * 109.47044 * 270.00196 * 3 2 1 5 5 H 1.48498 * 109.47129 * 30.00308 * 3 2 1 6 6 H 1.48500 * 109.47279 * 150.00298 * 3 2 1 7 7 C 1.37877 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47040 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.35897 * 117.00230 * 179.97438 * 11 10 9 13 13 C 1.38816 * 120.01590 * 0.02562 * 12 11 10 14 14 C 1.38180 * 120.09275 * 179.97438 * 13 12 11 15 15 C 1.38155 * 120.12805 * 0.02562 * 14 13 12 16 16 C 1.38937 * 120.03273 * 359.97438 * 15 14 13 17 17 N 1.39675 * 120.04129 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.53003 * 109.46708 * 180.02562 * 18 17 16 20 20 O 1.42894 * 112.85434 * 53.80055 * 19 18 17 21 21 C 1.53787 * 113.61241 * 282.49295 * 19 18 17 22 22 C 1.53779 * 87.08104 * 220.02434 * 21 19 18 23 23 C 1.53778 * 87.08482 * 25.43150 * 22 21 19 24 24 C 1.38574 * 120.02243 * 180.25363 * 12 11 10 25 25 H 0.96997 * 120.00202 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47168 * 59.99786 * 9 7 2 27 27 H 1.08996 * 109.46794 * 300.00338 * 9 7 2 28 28 H 1.09001 * 109.47426 * 59.99808 * 10 9 7 29 29 H 1.09005 * 109.47345 * 299.99495 * 10 9 7 30 30 H 1.07998 * 119.95178 * 359.97438 * 13 12 11 31 31 H 1.07994 * 119.93484 * 179.97438 * 14 13 12 32 32 H 1.07997 * 119.98685 * 180.02562 * 15 14 13 33 33 H 0.97005 * 119.99698 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47134 * 299.99404 * 18 17 16 35 35 H 1.08994 * 109.47397 * 59.99696 * 18 17 16 36 36 H 0.96699 * 114.00237 * 309.66743 * 20 19 18 37 37 H 1.09005 * 113.61371 * 334.56748 * 21 19 18 38 38 H 1.09001 * 113.61328 * 105.47412 * 21 19 18 39 39 H 1.09003 * 113.61412 * 270.88626 * 22 21 19 40 40 H 1.09000 * 113.61968 * 139.98262 * 22 21 19 41 41 H 1.09001 * 113.61785 * 220.02198 * 23 22 21 42 42 H 1.09001 * 113.61692 * 89.11531 * 23 22 21 43 43 H 1.08006 * 120.06187 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5309 -4.8996 0.0001 12 6 2.2710 -6.0393 -0.0004 13 6 3.6573 -5.9670 -0.0009 14 6 4.4115 -7.1249 -0.0008 15 6 3.7887 -8.3581 -0.0008 16 6 2.4015 -8.4366 -0.0003 17 7 1.7717 -9.6833 -0.0009 18 6 2.5738 -10.9092 -0.0014 19 6 1.6458 -12.1257 -0.0025 20 8 0.6913 -12.0945 -1.0655 21 6 1.0293 -12.4315 1.3728 22 6 1.2549 -13.9192 1.0555 23 6 2.3882 -13.4669 0.1197 24 6 1.6424 -7.2742 -0.0052 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 4.1471 -5.0045 -0.0013 31 1 5.4898 -7.0657 -0.0016 32 1 4.3803 -9.2616 -0.0003 33 1 0.8031 -9.7373 -0.0009 34 1 3.2026 -10.9315 -0.8914 35 1 3.2027 -10.9323 0.8885 36 1 0.2045 -11.2617 -1.1327 37 1 1.6261 -12.0681 2.2094 38 1 -0.0225 -12.1562 1.4507 39 1 0.4190 -14.3863 0.5348 40 1 1.6004 -14.5005 1.9104 41 1 2.4335 -14.0275 -0.8140 42 1 3.3566 -13.3865 0.6136 43 1 0.5639 -7.3324 -0.0081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565594524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:00 Heat of formation + Delta-G solvation = -69.768289 kcal Electronic energy + Delta-G solvation = -22098.349017 eV Core-core repulsion = 18722.167677 eV Total energy + Delta-G solvation = -3376.181341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18658 -40.65929 -38.84804 -35.99581 -35.59182 -35.30146 -32.57719 -31.35711 -30.07766 -28.05227 -26.91259 -26.60269 -24.10555 -23.87795 -22.78259 -21.72407 -20.67528 -19.41206 -18.51039 -18.01195 -17.05725 -16.91290 -16.75285 -16.70736 -16.52652 -15.95836 -15.69038 -15.49740 -15.19211 -14.47036 -14.33469 -14.29537 -14.21517 -13.95112 -13.33097 -13.28340 -13.19401 -12.84234 -12.58684 -12.52957 -12.45326 -12.14796 -11.98441 -11.80642 -11.65667 -11.55072 -11.38104 -11.23283 -10.92308 -10.64723 -10.61777 -9.22554 -8.38873 -8.26384 -6.40022 0.56398 0.68171 1.41132 1.43592 1.54763 2.11503 2.38036 2.69464 2.94800 3.03586 3.07871 3.51765 3.65284 3.75500 3.90478 3.99499 4.25596 4.28703 4.29217 4.34606 4.41517 4.51461 4.55954 4.66503 4.69659 4.75320 4.78568 4.82827 4.97645 5.03380 5.07607 5.23001 5.28838 5.33049 5.41504 5.47469 5.51855 5.61923 5.66700 5.75203 6.07349 6.33856 6.55970 6.63786 6.74735 6.76235 7.29955 8.86787 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.041978 B = 0.002266 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.852787 B =12356.080073 C =12785.545064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.342 6.342 12 C 0.151 3.849 13 C -0.280 4.280 14 C -0.032 4.032 15 C -0.236 4.236 16 C 0.253 3.747 17 N -0.739 5.739 18 C 0.112 3.888 19 C 0.094 3.906 20 O -0.554 6.554 21 C -0.163 4.163 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.250 4.250 25 H 0.267 0.733 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.386 0.614 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.808 -28.023 1.786 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.012 3.988 11 O -0.256 6.256 12 C 0.105 3.895 13 C -0.301 4.301 14 C -0.051 4.051 15 C -0.258 4.258 16 C 0.149 3.851 17 N -0.370 5.370 18 C -0.012 4.012 19 C 0.052 3.948 20 O -0.362 6.362 21 C -0.201 4.201 22 C -0.173 4.173 23 C -0.159 4.159 24 C -0.274 4.274 25 H 0.076 0.924 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.237 0.763 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.800 -28.667 1.688 29.757 hybrid contribution -0.705 1.844 -0.011 1.974 sum 7.095 -26.823 1.678 27.796 Atomic orbital electron populations 1.70121 1.08049 1.28220 1.50651 1.26063 0.95859 1.03744 0.94181 0.85267 0.78567 0.77455 0.78663 1.19538 1.20642 1.18291 1.21397 0.93836 0.90998 1.52076 0.91109 1.18973 0.94565 0.91446 0.95953 1.22840 0.95311 0.80146 1.00493 1.86054 1.37697 1.13890 1.87994 1.19162 0.90843 0.86230 0.93312 1.21245 0.92404 1.00689 1.15768 1.20971 1.00482 0.90688 0.92951 1.20763 0.92134 0.98779 1.14146 1.17369 0.91834 0.84662 0.91266 1.44468 1.08455 1.01722 1.82329 1.22005 0.94251 0.82247 1.02662 1.22594 0.89839 0.94771 0.87574 1.86492 1.55057 1.42189 1.52452 1.23638 1.01896 0.97434 0.97140 1.22746 0.98622 0.96112 0.99782 1.23071 0.98897 0.93229 1.00733 1.19784 0.99978 0.89075 1.18543 0.92446 0.98374 0.98351 0.92245 0.92259 0.86061 0.83249 0.83677 0.76313 0.91458 0.89827 0.76404 0.88389 0.91345 0.90731 0.89920 0.90911 0.86629 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.98 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.07 3.78 7.74 -2.92 -0.02 3.76 16 9 C 0.03 1.55 5.34 29.85 0.16 1.71 16 10 C 0.09 3.92 4.68 71.98 0.34 4.25 16 11 O -0.34 -15.10 10.13 -92.39 -0.94 -16.03 16 12 C 0.15 5.51 6.68 22.49 0.15 5.66 16 13 C -0.28 -8.95 9.04 22.39 0.20 -8.74 16 14 C -0.03 -0.79 10.03 22.24 0.22 -0.57 16 15 C -0.24 -5.20 9.31 22.42 0.21 -4.99 16 16 C 0.25 6.05 6.65 38.20 0.25 6.30 16 17 N -0.74 -12.29 5.51 -339.47 -1.87 -14.16 16 18 C 0.11 1.41 4.49 86.38 0.39 1.80 16 19 C 0.09 1.12 1.41 -10.26 -0.01 1.11 16 20 O -0.55 -8.51 13.41 -148.98 -2.00 -10.51 16 21 C -0.16 -1.79 7.47 31.12 0.23 -1.55 16 22 C -0.14 -1.39 8.02 31.12 0.25 -1.14 16 23 C -0.12 -1.21 7.47 31.12 0.23 -0.98 16 24 C -0.25 -7.70 9.83 22.49 0.22 -7.48 16 25 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 29 H 0.06 2.54 7.66 -2.38 -0.02 2.52 16 30 H 0.12 3.89 6.29 -2.91 -0.02 3.87 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.15 2.32 6.72 -2.91 -0.02 2.30 16 33 H 0.40 5.74 7.34 -92.70 -0.68 5.06 16 34 H 0.07 0.90 7.95 -2.39 -0.02 0.88 16 35 H 0.08 0.89 7.86 -2.39 -0.02 0.87 16 36 H 0.39 4.26 7.62 -74.06 -0.56 3.69 16 37 H 0.10 0.95 8.04 -2.38 -0.02 0.93 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.12 0.70 8.10 -2.39 -0.02 0.68 16 43 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -69.79 354.45 0.82 -68.97 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.23 Total: 17.90 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 3.54 Total: -35.14 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.59 Total: -71.08 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -2.93 Total: -26.54 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.79 0.82 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565594524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds