Wall clock time and date at job start Tue Mar 31 2020 08:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47615 * 85.58594 * 3 2 1 5 5 H 1.48500 * 109.47535 * 205.59038 * 3 2 1 6 6 H 1.48503 * 109.46944 * 325.59091 * 3 2 1 7 7 C 1.37878 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99637 * 3.38949 * 7 2 1 9 9 C 1.50699 * 120.00383 * 183.39453 * 7 2 1 10 10 C 1.53003 * 115.54766 * 272.43480 * 9 7 2 11 11 N 1.46908 * 109.46890 * 294.98303 * 10 9 7 12 12 C 1.46900 * 110.99877 * 184.25438 * 11 10 9 13 13 C 1.52996 * 109.46804 * 185.34225 * 12 11 10 14 14 H 1.09000 * 109.47963 * 54.54374 * 13 12 11 15 15 O 1.42906 * 109.47020 * 294.54181 * 13 12 11 16 16 C 1.52999 * 109.47079 * 174.54649 * 13 12 11 17 17 O 1.42901 * 109.47088 * 184.99611 * 16 13 12 18 18 C 1.35908 * 116.99963 * 179.97438 * 17 16 13 19 19 C 1.38729 * 120.05470 * 359.72645 * 18 17 16 20 20 C 1.38150 * 119.94410 * 179.74145 * 19 18 17 21 21 C 1.38266 * 120.05189 * 0.51023 * 20 19 18 22 22 C 1.38268 * 120.11290 * 359.76551 * 21 20 19 23 23 C 1.38146 * 120.05352 * 359.97438 * 22 21 20 24 24 C 1.52999 * 117.50485 * 126.75892 * 9 7 2 25 25 C 1.52995 * 117.50147 * 58.09689 * 9 7 2 26 26 H 0.96998 * 119.99865 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47694 * 54.97885 * 10 9 7 28 28 H 1.08998 * 109.47470 * 174.98500 * 10 9 7 29 29 H 1.00902 * 110.99611 * 308.21052 * 11 10 9 30 30 H 1.09000 * 109.46610 * 305.33690 * 12 11 10 31 31 H 1.08997 * 109.47322 * 65.33542 * 12 11 10 32 32 H 0.96703 * 113.99763 * 300.00328 * 15 13 12 33 33 H 1.08994 * 109.46960 * 304.99274 * 16 13 12 34 34 H 1.08994 * 109.47386 * 64.99586 * 16 13 12 35 35 H 1.08002 * 120.03058 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.97190 * 180.27371 * 20 19 18 37 37 H 1.08001 * 119.94095 * 179.74281 * 21 20 19 38 38 H 1.07996 * 119.96901 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.02062 * 179.97438 * 23 22 21 40 40 H 1.09003 * 117.49488 * 0.02562 * 24 9 7 41 41 H 1.08999 * 117.49948 * 145.01749 * 24 9 7 42 42 H 1.09000 * 117.50344 * 214.98365 * 25 9 7 43 43 H 1.09007 * 117.49603 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4034 2.1004 1.3959 5 1 3.5902 1.4151 -0.6047 6 1 1.4963 2.6239 -0.7912 7 6 2.0046 -1.1940 0.0005 8 1 1.4660 -2.1286 -0.0544 9 6 3.5096 -1.1952 0.0778 10 6 4.2393 -1.0968 -1.2634 11 7 3.9623 -2.2991 -2.0608 12 6 4.7271 -2.2868 -3.3150 13 6 4.3143 -3.4824 -4.1757 14 1 3.2337 -3.4718 -4.3183 15 8 4.6968 -4.6944 -3.5223 16 6 5.0090 -3.3954 -5.5362 17 8 4.5353 -4.4461 -6.3810 18 6 5.0554 -4.5116 -7.6349 19 6 5.9981 -3.5803 -8.0456 20 6 6.5293 -3.6522 -9.3188 21 6 6.1143 -4.6450 -10.1871 22 6 5.1707 -5.5710 -9.7821 23 6 4.6405 -5.5065 -8.5080 24 6 4.1601 -2.0392 1.1757 25 6 4.1556 -0.5124 1.2850 26 1 -0.4850 0.8400 -0.0004 27 1 3.8918 -0.2154 -1.8025 28 1 5.3121 -1.0162 -1.0884 29 1 4.1512 -3.1363 -1.5302 30 1 4.5236 -1.3624 -3.8555 31 1 5.7921 -2.3502 -3.0917 32 1 5.6474 -4.7722 -3.3629 33 1 4.7882 -2.4321 -5.9959 34 1 6.0859 -3.4953 -5.4013 35 1 6.3192 -2.8019 -7.3692 36 1 7.2664 -2.9301 -9.6375 37 1 6.5277 -4.6971 -11.1835 38 1 4.8480 -6.3452 -10.4623 39 1 3.9032 -6.2298 -8.1924 40 1 3.4995 -2.5940 1.8419 41 1 5.1080 -2.5242 0.9426 42 1 5.1005 0.0065 1.1239 43 1 3.4919 -0.0620 2.0232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569232209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:26 Heat of formation + Delta-G solvation = -33.295069 kcal Electronic energy + Delta-G solvation = -22438.656814 eV Core-core repulsion = 19064.057071 eV Total energy + Delta-G solvation = -3374.599743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35164 -38.39208 -37.43779 -36.71106 -34.03866 -31.96929 -31.43028 -30.77167 -29.59447 -26.77049 -25.39873 -23.63498 -22.81254 -22.08590 -21.59783 -21.35435 -18.94165 -18.43377 -16.99319 -16.74019 -16.38880 -16.14420 -15.51927 -15.37063 -14.81860 -14.74610 -14.36369 -14.09239 -13.68458 -13.58397 -13.40621 -13.12098 -12.74618 -12.71737 -12.37532 -11.88657 -11.81588 -11.68695 -11.28418 -11.20499 -11.06073 -10.79292 -10.57110 -10.45915 -10.25373 -9.93359 -9.52035 -9.27201 -9.01984 -8.48514 -8.46585 -8.42936 -7.77019 -5.99730 -3.99187 1.07273 1.20439 2.89409 3.32400 3.41633 3.44601 3.54040 4.28218 4.37933 4.49410 4.55808 4.63828 4.79201 4.85932 4.88206 5.02289 5.08340 5.12664 5.15600 5.26508 5.27668 5.32753 5.42603 5.69196 5.74285 5.81892 6.01867 6.05107 6.09681 6.14252 6.15989 6.18833 6.26705 6.42964 6.47877 6.52294 6.73927 7.07160 7.17944 7.21481 7.60458 7.66628 7.81362 8.01235 8.63085 9.06704 9.63489 11.12969 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002771 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.094975 B =10103.118772 C =10342.883988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.282 1.282 5 H -0.261 1.261 6 H -0.295 1.295 7 C -0.464 4.464 8 H 0.079 0.921 9 C 0.006 3.994 10 C 0.100 3.900 11 N -0.660 5.660 12 C 0.033 3.967 13 C 0.113 3.887 14 H 0.122 0.878 15 O -0.546 6.546 16 C 0.029 3.971 17 O -0.301 6.301 18 C 0.133 3.867 19 C -0.213 4.213 20 C -0.081 4.081 21 C -0.164 4.164 22 C -0.081 4.081 23 C -0.154 4.154 24 C -0.184 4.184 25 C -0.202 4.202 26 H 0.262 0.738 27 H 0.068 0.932 28 H 0.001 0.999 29 H 0.345 0.655 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.367 0.633 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.471 -7.190 -16.697 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.185 1.185 6 H -0.222 1.222 7 C -0.501 4.501 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.029 4.029 11 N -0.291 5.291 12 C -0.097 4.097 13 C 0.053 3.947 14 H 0.140 0.860 15 O -0.350 6.350 16 C -0.047 4.047 17 O -0.214 6.214 18 C 0.087 3.913 19 C -0.231 4.231 20 C -0.099 4.099 21 C -0.183 4.183 22 C -0.099 4.099 23 C -0.172 4.172 24 C -0.221 4.221 25 C -0.239 4.239 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.019 0.981 29 H 0.164 0.836 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.213 0.787 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.934 -7.032 -16.905 23.008 hybrid contribution 2.136 1.286 0.307 2.512 sum 16.071 -5.746 -16.598 23.807 Atomic orbital electron populations 1.69900 1.06273 1.26726 1.51119 1.24949 0.94538 0.98784 0.94514 0.86868 0.80563 0.83837 0.77978 1.20855 1.18529 1.22229 1.20168 0.86096 0.94461 1.49404 0.90296 1.19434 0.95691 0.99023 0.85368 1.21773 0.94026 0.92360 0.94752 1.60098 1.58155 1.05532 1.05346 1.22469 0.94987 0.98250 0.94032 1.22049 1.01591 0.84456 0.86567 0.85999 1.86719 1.28262 1.39541 1.80477 1.23642 0.98863 0.90259 0.91932 1.86178 1.63136 1.50941 1.21160 1.19133 0.92727 0.94546 0.84857 1.21302 1.01584 1.01598 0.98659 1.20954 0.98391 0.97646 0.92933 1.21055 1.00152 0.96901 1.00162 1.20982 0.95708 0.98298 0.94955 1.20506 1.03688 0.99623 0.93403 1.22811 1.00772 0.92709 1.05810 1.22980 1.01246 0.95055 1.04665 0.92813 0.91337 0.98062 0.83630 0.90269 0.95811 0.78727 0.90915 0.91903 0.85547 0.85916 0.86039 0.85416 0.85066 0.89448 0.91475 0.91284 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.65 24.96 -169.99 -4.24 17.41 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.26 -6.00 5.63 56.52 0.32 -5.68 16 6 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.46 -12.88 9.32 -34.44 -0.32 -13.20 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 C 0.01 0.14 0.89 -155.66 -0.14 0.00 16 10 C 0.10 2.00 5.11 -3.82 -0.02 1.98 16 11 N -0.66 -11.99 6.40 -113.77 -0.73 -12.72 16 12 C 0.03 0.45 5.34 -3.83 -0.02 0.43 16 13 C 0.11 1.45 3.49 -26.73 -0.09 1.36 16 14 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 15 O -0.55 -7.26 12.94 -40.09 -0.52 -7.77 16 16 C 0.03 0.31 4.37 37.16 0.16 0.47 16 17 O -0.30 -3.88 10.10 -24.31 -0.25 -4.12 16 18 C 0.13 1.55 6.69 -39.22 -0.26 1.29 16 19 C -0.21 -2.13 9.04 -39.43 -0.36 -2.48 16 20 C -0.08 -0.71 10.04 -39.60 -0.40 -1.10 16 21 C -0.16 -1.36 10.04 -39.56 -0.40 -1.76 16 22 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 23 C -0.15 -1.62 9.99 -39.43 -0.39 -2.01 16 24 C -0.18 -3.68 9.96 -26.70 -0.27 -3.94 16 25 C -0.20 -4.25 7.60 -26.70 -0.20 -4.45 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.07 1.48 6.61 -51.93 -0.34 1.13 16 28 H 0.00 0.02 8.09 -51.93 -0.42 -0.40 16 29 H 0.34 6.16 8.38 -39.29 -0.33 5.83 16 30 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.37 3.39 9.05 45.56 0.41 3.80 16 33 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16 34 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 35 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.97 7.32 -51.92 -0.38 1.59 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.32 354.11 -8.88 -41.20 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.06 Total: 10.14 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.20 Total: -22.52 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.04 Total: -39.67 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.76 Total: -11.89 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.24 Total: 17.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.32 -8.88 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569232209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.905 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds