Wall clock time and date at job start Tue Mar 31 2020 08:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47615 * 85.58594 * 3 2 1 5 5 H 1.48500 * 109.47535 * 205.59038 * 3 2 1 6 6 H 1.48503 * 109.46944 * 325.59091 * 3 2 1 7 7 C 1.37878 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99637 * 3.38949 * 7 2 1 9 9 C 1.50699 * 120.00383 * 183.39453 * 7 2 1 10 10 C 1.53003 * 115.54766 * 272.43480 * 9 7 2 11 11 N 1.46908 * 109.46890 * 294.98303 * 10 9 7 12 12 C 1.46900 * 110.99877 * 184.25438 * 11 10 9 13 13 C 1.52996 * 109.46804 * 185.34225 * 12 11 10 14 14 H 1.09000 * 109.47963 * 54.54374 * 13 12 11 15 15 O 1.42906 * 109.47020 * 294.54181 * 13 12 11 16 16 C 1.52999 * 109.47079 * 174.54649 * 13 12 11 17 17 O 1.42901 * 109.47088 * 184.99611 * 16 13 12 18 18 C 1.35908 * 116.99963 * 179.97438 * 17 16 13 19 19 C 1.38729 * 120.05470 * 359.72645 * 18 17 16 20 20 C 1.38150 * 119.94410 * 179.74145 * 19 18 17 21 21 C 1.38266 * 120.05189 * 0.51023 * 20 19 18 22 22 C 1.38268 * 120.11290 * 359.76551 * 21 20 19 23 23 C 1.38146 * 120.05352 * 359.97438 * 22 21 20 24 24 C 1.52999 * 117.50485 * 126.75892 * 9 7 2 25 25 C 1.52995 * 117.50147 * 58.09689 * 9 7 2 26 26 H 0.96998 * 119.99865 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47694 * 54.97885 * 10 9 7 28 28 H 1.08998 * 109.47470 * 174.98500 * 10 9 7 29 29 H 1.00902 * 110.99611 * 308.21052 * 11 10 9 30 30 H 1.09000 * 109.46610 * 305.33690 * 12 11 10 31 31 H 1.08997 * 109.47322 * 65.33542 * 12 11 10 32 32 H 0.96703 * 113.99763 * 300.00328 * 15 13 12 33 33 H 1.08994 * 109.46960 * 304.99274 * 16 13 12 34 34 H 1.08994 * 109.47386 * 64.99586 * 16 13 12 35 35 H 1.08002 * 120.03058 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.97190 * 180.27371 * 20 19 18 37 37 H 1.08001 * 119.94095 * 179.74281 * 21 20 19 38 38 H 1.07996 * 119.96901 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.02062 * 179.97438 * 23 22 21 40 40 H 1.09003 * 117.49488 * 0.02562 * 24 9 7 41 41 H 1.08999 * 117.49948 * 145.01749 * 24 9 7 42 42 H 1.09000 * 117.50344 * 214.98365 * 25 9 7 43 43 H 1.09007 * 117.49603 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4034 2.1004 1.3959 5 1 3.5902 1.4151 -0.6047 6 1 1.4963 2.6239 -0.7912 7 6 2.0046 -1.1940 0.0005 8 1 1.4660 -2.1286 -0.0544 9 6 3.5096 -1.1952 0.0778 10 6 4.2393 -1.0968 -1.2634 11 7 3.9623 -2.2991 -2.0608 12 6 4.7271 -2.2868 -3.3150 13 6 4.3143 -3.4824 -4.1757 14 1 3.2337 -3.4718 -4.3183 15 8 4.6968 -4.6944 -3.5223 16 6 5.0090 -3.3954 -5.5362 17 8 4.5353 -4.4461 -6.3810 18 6 5.0554 -4.5116 -7.6349 19 6 5.9981 -3.5803 -8.0456 20 6 6.5293 -3.6522 -9.3188 21 6 6.1143 -4.6450 -10.1871 22 6 5.1707 -5.5710 -9.7821 23 6 4.6405 -5.5065 -8.5080 24 6 4.1601 -2.0392 1.1757 25 6 4.1556 -0.5124 1.2850 26 1 -0.4850 0.8400 -0.0004 27 1 3.8918 -0.2154 -1.8025 28 1 5.3121 -1.0162 -1.0884 29 1 4.1512 -3.1363 -1.5302 30 1 4.5236 -1.3624 -3.8555 31 1 5.7921 -2.3502 -3.0917 32 1 5.6474 -4.7722 -3.3629 33 1 4.7882 -2.4321 -5.9959 34 1 6.0859 -3.4953 -5.4013 35 1 6.3192 -2.8019 -7.3692 36 1 7.2664 -2.9301 -9.6375 37 1 6.5277 -4.6971 -11.1835 38 1 4.8480 -6.3452 -10.4623 39 1 3.9032 -6.2298 -8.1924 40 1 3.4995 -2.5940 1.8419 41 1 5.1080 -2.5242 0.9426 42 1 5.1005 0.0065 1.1239 43 1 3.4919 -0.0620 2.0232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569232209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:25 Heat of formation + Delta-G solvation = -57.386316 kcal Electronic energy + Delta-G solvation = -22439.701489 eV Core-core repulsion = 19064.057071 eV Total energy + Delta-G solvation = -3375.644418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13492 -39.47707 -38.76910 -37.73991 -35.36872 -34.12398 -32.19874 -31.60851 -30.44982 -28.27101 -27.11665 -24.87939 -23.65713 -23.25839 -22.78821 -22.37354 -20.76773 -19.23038 -18.36366 -17.88290 -17.63850 -16.98976 -16.82859 -16.43711 -16.21005 -15.76995 -15.41410 -15.32787 -14.93612 -14.86975 -14.68468 -14.33348 -14.07602 -13.81714 -13.48761 -13.39632 -13.04934 -12.84328 -12.47756 -12.42087 -12.15028 -12.10031 -11.97533 -11.88796 -11.64381 -11.51550 -11.05117 -10.87640 -10.54879 -10.24478 -9.95495 -9.17419 -9.09286 -8.20399 -6.24046 0.39113 0.49389 1.38056 1.39876 1.52796 2.06691 2.42868 2.84921 3.07622 3.14898 3.42070 3.48905 3.82484 3.93526 3.95241 4.05197 4.06653 4.16930 4.26372 4.31392 4.34267 4.40792 4.47819 4.50375 4.56151 4.59601 4.69671 4.75683 4.85364 4.87046 5.06068 5.08862 5.11495 5.36791 5.43719 5.48188 5.54846 5.60268 5.78341 5.87034 6.27655 6.42415 6.46190 6.65287 6.83064 6.83506 7.42431 8.96614 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.002771 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.094975 B =10103.118772 C =10342.883988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.009 3.991 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.227 1.227 6 H -0.302 1.302 7 C -0.460 4.460 8 H 0.024 0.976 9 C -0.023 4.023 10 C 0.110 3.890 11 N -0.688 5.688 12 C 0.038 3.962 13 C 0.121 3.879 14 H 0.086 0.914 15 O -0.566 6.566 16 C 0.036 3.964 17 O -0.328 6.328 18 C 0.106 3.894 19 C -0.220 4.220 20 C -0.086 4.086 21 C -0.165 4.165 22 C -0.084 4.084 23 C -0.176 4.176 24 C -0.166 4.166 25 C -0.195 4.195 26 H 0.261 0.739 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.344 0.656 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.385 0.615 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.617 -6.308 -18.029 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.150 1.150 6 H -0.229 1.229 7 C -0.498 4.498 8 H 0.042 0.958 9 C -0.024 4.024 10 C -0.019 4.019 11 N -0.320 5.320 12 C -0.092 4.092 13 C 0.061 3.939 14 H 0.104 0.896 15 O -0.372 6.372 16 C -0.040 4.040 17 O -0.242 6.242 18 C 0.061 3.939 19 C -0.239 4.239 20 C -0.104 4.104 21 C -0.183 4.183 22 C -0.102 4.102 23 C -0.195 4.195 24 C -0.203 4.203 25 C -0.233 4.233 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.128 -6.173 -18.242 26.448 hybrid contribution 0.805 0.834 0.684 1.346 sum 18.933 -5.339 -17.557 26.367 Atomic orbital electron populations 1.70080 1.08495 1.27634 1.53828 1.25864 0.95232 1.03021 0.94480 0.85821 0.80525 0.78441 0.78329 1.20122 1.14980 1.22922 1.20333 0.89368 0.92214 1.47886 0.95762 1.19366 0.92839 1.02328 0.87856 1.21515 0.95233 0.92395 0.92778 1.59987 1.60384 1.04961 1.06664 1.22481 0.96201 0.98507 0.91965 1.21798 0.99939 0.84235 0.87956 0.89573 1.86674 1.30156 1.39722 1.80695 1.23571 0.99782 0.90299 0.90356 1.86120 1.64153 1.51838 1.22121 1.19403 0.94031 0.95838 0.84623 1.21519 1.01254 1.01517 0.99620 1.21333 0.98509 0.98131 0.92408 1.21450 0.99437 0.96171 1.01267 1.21305 0.95442 0.98969 0.94446 1.20724 1.04371 0.99912 0.94449 1.22831 1.01588 0.92496 1.03421 1.23023 1.01927 0.95833 1.02497 0.92991 0.93069 0.94729 0.83666 0.89977 0.92511 0.76604 0.89979 0.89390 0.84276 0.83435 0.83423 0.83143 0.85538 0.90998 0.87712 0.87841 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.76 13.96 21.45 0.30 -61.46 16 2 C 0.01 0.55 5.47 84.65 0.46 1.02 16 3 Si 0.94 44.63 24.96 68.60 1.71 46.35 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.23 -9.43 5.63 99.48 0.56 -8.87 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.46 -26.39 9.32 25.60 0.24 -26.15 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 9 C -0.02 -1.00 0.89 -52.93 -0.05 -1.05 16 10 C 0.11 4.10 5.11 86.30 0.44 4.54 16 11 N -0.69 -24.17 6.40 -513.87 -3.29 -27.46 16 12 C 0.04 0.95 5.34 86.30 0.46 1.42 16 13 C 0.12 3.04 3.49 30.59 0.11 3.14 16 14 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 15 O -0.57 -14.64 12.94 -144.34 -1.87 -16.50 16 16 C 0.04 0.71 4.37 71.98 0.31 1.03 16 17 O -0.33 -8.48 10.10 -87.87 -0.89 -9.37 16 18 C 0.11 2.43 6.69 22.50 0.15 2.58 16 19 C -0.22 -4.02 9.04 22.37 0.20 -3.82 16 20 C -0.09 -1.27 10.04 22.26 0.22 -1.05 16 21 C -0.17 -2.30 10.04 22.28 0.22 -2.08 16 22 C -0.08 -1.32 10.04 22.26 0.22 -1.10 16 23 C -0.18 -3.70 9.99 22.36 0.22 -3.47 16 24 C -0.17 -6.25 9.96 30.62 0.30 -5.95 16 25 C -0.20 -7.60 7.60 30.62 0.23 -7.37 16 26 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 27 H 0.05 2.07 6.61 -2.39 -0.02 2.06 16 28 H 0.03 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.34 11.92 8.38 -89.69 -0.75 11.17 16 30 H 0.08 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.39 6.37 9.05 -74.06 -0.67 5.70 16 33 H 0.08 1.46 7.65 -2.39 -0.02 1.44 16 34 H 0.09 1.30 7.68 -2.39 -0.02 1.28 16 35 H 0.14 2.04 6.30 -2.91 -0.02 2.02 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.07 2.98 7.32 -2.38 -0.02 2.96 16 Total: -1.00 -74.30 354.11 -0.83 -75.14 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.56 Total: 31.62 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 3.76 Total: -38.30 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.99 Total: -88.93 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -2.75 Total: -25.87 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.71 Total: 46.35 kcal Total: -74.30 -0.83 -75.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569232209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.750 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds