Wall clock time and date at job start Tue Mar 31 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 120.00246 * 2 1 4 4 C 1.52993 * 109.47420 * 124.99967 * 3 2 1 5 5 C 1.53002 * 109.47532 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47412 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46867 * 179.97438 * 6 5 4 8 8 C 1.40000 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38641 * 120.10373 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.00818 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47261 * 89.99989 * 20 18 16 22 22 H 1.48499 * 109.47410 * 210.00120 * 20 18 16 23 23 H 1.48501 * 109.47471 * 330.00087 * 20 18 16 24 24 H 1.07998 * 119.99766 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99538 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99694 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47303 * 5.00003 * 3 2 1 28 28 H 1.08999 * 109.47621 * 245.00874 * 3 2 1 29 29 H 1.09003 * 109.47097 * 60.00216 * 4 3 2 30 30 H 1.09004 * 109.47549 * 300.00266 * 4 3 2 31 31 H 1.09003 * 109.46792 * 59.99981 * 5 4 3 32 32 H 1.09004 * 109.46881 * 300.00626 * 5 4 3 33 33 H 1.08999 * 109.46712 * 60.00365 * 6 5 4 34 34 H 1.08999 * 109.47173 * 300.00029 * 6 5 4 35 35 H 0.97001 * 120.00343 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.99368 * 359.95163 * 9 8 7 37 37 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 38 38 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 39 39 H 1.08007 * 120.00130 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 41 41 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 42 42 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7708 2.6865 2.3639 7 7 5.5033 3.9553 2.3639 8 6 6.4548 4.2141 3.3577 9 6 6.7059 3.2712 4.3425 10 6 7.6465 3.5287 5.3229 11 6 8.3396 4.7252 5.3248 12 6 8.0959 5.6714 4.3467 13 6 7.1534 5.4220 3.3599 14 16 6.8400 6.6263 2.1124 15 6 7.9730 7.9732 2.5519 16 6 7.8222 9.0995 1.5621 17 1 7.1157 9.0135 0.7497 18 6 8.5868 10.2393 1.6930 19 7 9.4480 10.3434 2.6813 20 14 8.4003 11.6351 0.4657 21 1 7.3581 12.5787 0.9438 22 1 9.6936 12.3525 0.3316 23 1 8.0010 11.0838 -0.8541 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.7401 0.5065 1.0920 30 1 2.4774 1.2355 2.1130 31 1 3.0945 3.4846 1.2718 32 1 4.3574 2.7562 0.2505 33 1 5.4760 1.8602 2.2745 34 1 4.2127 2.5888 3.2951 35 1 5.3286 4.6162 1.6757 36 1 6.1665 2.3356 4.3442 37 1 7.8410 2.7928 6.0891 38 1 9.0702 4.9230 6.0951 39 1 8.6394 6.6048 4.3509 40 1 7.7365 8.3351 3.5524 41 1 8.9991 7.6060 2.5314 42 1 9.9863 11.1452 2.7732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570252776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:04 Heat of formation + Delta-G solvation = 15.552303 kcal Electronic energy + Delta-G solvation = -19418.037733 eV Core-core repulsion = 16488.309042 eV Total energy + Delta-G solvation = -2929.728691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.98289 -37.04279 -35.37659 -33.24251 -32.76398 -30.66118 -29.49560 -28.52686 -27.13313 -24.02701 -23.15376 -22.45544 -21.24840 -20.90583 -20.02565 -17.53669 -16.32300 -16.22470 -16.11126 -15.79917 -15.23836 -14.76551 -14.29842 -14.15723 -13.81049 -13.55543 -13.42470 -12.98387 -12.90382 -12.61702 -12.33580 -12.28277 -12.10307 -11.68332 -11.51357 -11.37652 -11.08237 -10.93269 -10.89693 -10.84219 -10.66268 -9.95159 -9.80161 -9.65041 -9.64491 -9.09230 -9.02982 -8.60346 -7.44793 -6.29843 -6.23990 -4.29221 1.76501 1.95255 2.00745 2.58503 3.23612 3.29469 3.34206 3.56506 3.82104 4.24099 4.31555 4.47554 4.65416 4.70592 4.87011 5.12056 5.13398 5.15764 5.27111 5.28571 5.42085 5.48885 5.49991 5.56255 5.65187 5.68772 5.78447 5.91179 6.00513 6.01668 6.12305 6.30219 6.34166 6.44564 6.55857 6.75885 7.00711 7.02074 7.05167 7.21560 7.63603 7.69160 7.93764 7.99153 8.71704 9.34277 10.87254 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.003089 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.428604 B = 9062.139056 C =10923.345267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.129 3.871 7 N -0.746 5.746 8 C 0.223 3.777 9 C -0.190 4.190 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.089 4.089 13 C -0.137 4.137 14 S -0.181 6.181 15 C 0.079 3.921 16 C -0.517 4.517 17 H 0.067 0.933 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.404 0.596 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 -18.786 -0.256 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.170 4.170 3 C -0.134 4.134 4 C -0.148 4.148 5 C -0.171 4.171 6 C 0.005 3.995 7 N -0.379 5.379 8 C 0.115 3.885 9 C -0.214 4.214 10 C -0.116 4.116 11 C -0.182 4.182 12 C -0.114 4.114 13 C -0.253 4.253 14 S 0.064 5.936 15 C -0.068 4.068 16 C -0.557 4.557 17 H 0.086 0.914 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.933 -18.779 -1.163 22.280 hybrid contribution 0.834 1.015 0.318 1.352 sum -11.098 -17.764 -0.845 20.963 Atomic orbital electron populations 1.23869 0.96034 1.01810 1.01809 1.22998 0.96045 0.98615 0.99347 1.20789 0.98277 0.95321 0.98983 1.21428 0.97749 0.97145 0.98455 1.21792 0.98298 0.98352 0.98643 1.21242 0.93663 0.86534 0.98105 1.44733 1.42601 1.19510 1.31040 1.17305 0.89580 0.92108 0.89476 1.20415 1.03931 0.99446 0.97645 1.20761 0.96112 0.96874 0.97823 1.20795 1.02466 0.94759 1.00152 1.21180 0.96667 0.99859 0.93700 1.21488 1.03146 0.98030 1.02676 1.84881 1.57346 1.15623 1.35793 1.21302 0.94055 0.90977 1.00431 1.20630 1.23443 0.99623 1.11968 0.91446 1.24952 0.94582 0.98281 0.95921 1.69947 1.23653 1.28610 1.30494 0.86334 0.77641 0.81406 0.81178 1.20299 1.20911 1.19542 0.88655 0.88595 0.87467 0.91376 0.90827 0.91578 0.91621 0.91149 0.91105 0.92666 0.92671 0.75949 0.86582 0.86758 0.86666 0.85247 0.93937 0.93926 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 14.32 29.01 0.42 -0.93 16 2 C -0.15 -1.07 9.52 -36.03 -0.34 -1.41 16 3 C -0.10 -0.69 5.66 -27.89 -0.16 -0.85 16 4 C -0.11 -0.81 5.20 -26.73 -0.14 -0.95 16 5 C -0.13 -1.19 5.33 -26.73 -0.14 -1.33 16 6 C 0.13 1.41 4.92 -4.04 -0.02 1.39 16 7 N -0.75 -11.02 5.68 -58.44 -0.33 -11.35 16 8 C 0.22 3.82 6.66 -83.49 -0.56 3.27 16 9 C -0.19 -2.85 9.31 -39.42 -0.37 -3.22 16 10 C -0.09 -1.37 10.04 -39.55 -0.40 -1.77 16 11 C -0.16 -2.61 10.04 -39.56 -0.40 -3.01 16 12 C -0.09 -1.72 9.36 -39.40 -0.37 -2.09 16 13 C -0.14 -2.71 6.12 -38.92 -0.24 -2.95 16 14 S -0.18 -3.97 20.37 -107.50 -2.19 -6.16 16 15 C 0.08 2.05 4.09 36.01 0.15 2.20 16 16 C -0.52 -14.40 9.13 -34.44 -0.31 -14.72 16 17 H 0.07 1.86 7.71 -52.48 -0.40 1.46 16 18 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 19 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 20 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 25 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 26 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 27 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 34 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 35 H 0.40 6.24 7.02 -40.82 -0.29 5.96 16 36 H 0.12 1.45 6.74 -52.49 -0.35 1.09 16 37 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.68 5.88 -52.48 -0.31 2.38 16 40 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 41 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -29.20 360.98 -11.08 -40.29 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.74 Total: 5.14 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.98 Total: -24.62 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.40 Total: -36.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -2.19 Total: -6.16 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.20 -11.08 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570252776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.837 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds