Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 120.00246 * 2 1 4 4 C 1.52993 * 109.47420 * 124.99967 * 3 2 1 5 5 C 1.53002 * 109.47532 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47412 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46867 * 179.97438 * 6 5 4 8 8 C 1.40000 * 119.99414 * 179.97438 * 7 6 5 9 9 C 1.38641 * 120.10373 * 0.02562 * 8 7 6 10 10 C 1.38284 * 120.00818 * 179.97438 * 9 8 7 11 11 C 1.38275 * 120.20418 * 359.97438 * 10 9 8 12 12 C 1.38247 * 120.19312 * 0.02562 * 11 10 9 13 13 C 1.38724 * 119.99820 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.10569 * 179.97438 * 13 12 11 15 15 C 1.81406 * 102.99596 * 359.97438 * 14 13 12 16 16 C 1.50701 * 109.47044 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00074 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99939 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47261 * 89.99989 * 20 18 16 22 22 H 1.48499 * 109.47410 * 210.00120 * 20 18 16 23 23 H 1.48501 * 109.47471 * 330.00087 * 20 18 16 24 24 H 1.07998 * 119.99766 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99538 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99694 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47303 * 5.00003 * 3 2 1 28 28 H 1.08999 * 109.47621 * 245.00874 * 3 2 1 29 29 H 1.09003 * 109.47097 * 60.00216 * 4 3 2 30 30 H 1.09004 * 109.47549 * 300.00266 * 4 3 2 31 31 H 1.09003 * 109.46792 * 59.99981 * 5 4 3 32 32 H 1.09004 * 109.46881 * 300.00626 * 5 4 3 33 33 H 1.08999 * 109.46712 * 60.00365 * 6 5 4 34 34 H 1.08999 * 109.47173 * 300.00029 * 6 5 4 35 35 H 0.97001 * 120.00343 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.99368 * 359.95163 * 9 8 7 37 37 H 1.08004 * 119.90252 * 180.02562 * 10 9 8 38 38 H 1.07996 * 119.90390 * 179.74422 * 11 10 9 39 39 H 1.08007 * 120.00130 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47274 * 300.00167 * 15 14 13 41 41 H 1.09004 * 109.46798 * 60.00268 * 15 14 13 42 42 H 0.97006 * 119.99920 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6583 1.1819 6 6 4.7708 2.6865 2.3639 7 7 5.5033 3.9553 2.3639 8 6 6.4548 4.2141 3.3577 9 6 6.7059 3.2712 4.3425 10 6 7.6465 3.5287 5.3229 11 6 8.3396 4.7252 5.3248 12 6 8.0959 5.6714 4.3467 13 6 7.1534 5.4220 3.3599 14 16 6.8400 6.6263 2.1124 15 6 7.9730 7.9732 2.5519 16 6 7.8222 9.0995 1.5621 17 1 7.1157 9.0135 0.7497 18 6 8.5868 10.2393 1.6930 19 7 9.4480 10.3434 2.6813 20 14 8.4003 11.6351 0.4657 21 1 7.3581 12.5787 0.9438 22 1 9.6936 12.3525 0.3316 23 1 8.0010 11.0838 -0.8541 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.7401 0.5065 1.0920 30 1 2.4774 1.2355 2.1130 31 1 3.0945 3.4846 1.2718 32 1 4.3574 2.7562 0.2505 33 1 5.4760 1.8602 2.2745 34 1 4.2127 2.5888 3.2951 35 1 5.3286 4.6162 1.6757 36 1 6.1665 2.3356 4.3442 37 1 7.8410 2.7928 6.0891 38 1 9.0702 4.9230 6.0951 39 1 8.6394 6.6048 4.3509 40 1 7.7365 8.3351 3.5524 41 1 8.9991 7.6060 2.5314 42 1 9.9863 11.1452 2.7732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570252776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = 1.802900 kcal Electronic energy + Delta-G solvation = -19418.633952 eV Core-core repulsion = 16488.309042 eV Total energy + Delta-G solvation = -2930.324910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24304 -37.82485 -36.27529 -35.35147 -33.58473 -32.03482 -30.73366 -30.35219 -28.07685 -25.48073 -24.69032 -23.61859 -22.21409 -21.97787 -20.57141 -19.12315 -18.19528 -17.46062 -17.16805 -16.83076 -16.56272 -15.90095 -15.63097 -15.07286 -14.94148 -14.83212 -14.67017 -14.57827 -14.22844 -14.22010 -13.78139 -13.34680 -13.02262 -12.83786 -12.77326 -12.60208 -12.45944 -12.24991 -12.06735 -11.68343 -11.65823 -11.58966 -11.49849 -10.96808 -10.89732 -10.82657 -10.41185 -10.17637 -8.81260 -8.36892 -7.85943 -6.51685 0.41394 0.69474 0.91870 1.38718 1.40225 1.43422 1.52563 1.88522 2.33963 2.56123 2.92231 2.97750 3.81045 3.97691 4.01250 4.05332 4.23404 4.27057 4.46885 4.51203 4.53634 4.57143 4.60443 4.75049 4.80890 4.85562 4.87694 4.88893 4.94471 5.02314 5.08033 5.14696 5.27608 5.34191 5.42089 5.48030 5.52269 5.70021 5.79106 5.81699 5.93010 5.97035 6.45972 6.55382 6.73192 7.16883 8.75412 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.003089 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.428604 B = 9062.139056 C =10923.345267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.097 4.097 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.126 3.874 7 N -0.749 5.749 8 C 0.221 3.779 9 C -0.185 4.185 10 C -0.075 4.075 11 C -0.168 4.168 12 C -0.110 4.110 13 C -0.173 4.173 14 S -0.176 6.176 15 C 0.087 3.913 16 C -0.541 4.541 17 H 0.066 0.934 18 C 0.015 3.985 19 N -0.923 5.923 20 Si 0.980 3.020 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.263 1.263 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 -21.012 -0.134 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.178 4.178 3 C -0.134 4.134 4 C -0.140 4.140 5 C -0.165 4.165 6 C 0.003 3.997 7 N -0.379 5.379 8 C 0.112 3.888 9 C -0.210 4.210 10 C -0.096 4.096 11 C -0.190 4.190 12 C -0.135 4.135 13 C -0.290 4.290 14 S 0.066 5.934 15 C -0.060 4.060 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.803 3.197 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.188 1.188 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.116 0.884 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.055 -21.048 -1.029 24.790 hybrid contribution 1.142 1.529 0.372 1.945 sum -11.914 -19.519 -0.657 22.877 Atomic orbital electron populations 1.24018 0.96168 1.02330 1.01443 1.23088 0.96219 0.98784 0.99671 1.20777 0.98224 0.95448 0.98949 1.21362 0.97703 0.96261 0.98651 1.21741 0.97845 0.99194 0.97698 1.21487 0.93954 0.84911 0.99352 1.44980 1.42166 1.20658 1.30084 1.17535 0.89435 0.91360 0.90466 1.20856 1.03724 0.99952 0.96450 1.21263 0.94067 0.96393 0.97899 1.21056 1.03310 0.94895 0.99712 1.21109 0.97215 0.99837 0.95338 1.21493 1.05683 0.98840 1.02962 1.84473 1.56224 1.15128 1.37545 1.20897 0.93805 0.92510 0.98829 1.20970 1.23866 1.00784 1.12407 0.91581 1.25956 0.93891 1.00970 0.97820 1.70068 1.24319 1.29574 1.32149 0.85222 0.78052 0.77802 0.78644 1.19306 1.19985 1.18754 0.87683 0.88666 0.86617 0.91798 0.90881 0.90693 0.91257 0.91779 0.91538 0.91444 0.91589 0.76781 0.83077 0.82397 0.84678 0.88366 0.96632 0.96614 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 14.32 67.77 0.97 -1.47 16 2 C -0.16 -1.96 9.52 25.64 0.24 -1.72 16 3 C -0.10 -1.24 5.66 29.84 0.17 -1.07 16 4 C -0.10 -1.26 5.20 30.59 0.16 -1.10 16 5 C -0.13 -2.05 5.33 30.60 0.16 -1.89 16 6 C 0.13 2.42 4.92 86.38 0.42 2.84 16 7 N -0.75 -21.17 5.68 -338.82 -1.93 -23.10 16 8 C 0.22 7.32 6.66 38.25 0.25 7.57 16 9 C -0.19 -4.93 9.31 22.38 0.21 -4.72 16 10 C -0.08 -1.93 10.04 22.29 0.22 -1.70 16 11 C -0.17 -5.30 10.04 22.28 0.22 -5.08 16 12 C -0.11 -4.46 9.36 22.39 0.21 -4.25 16 13 C -0.17 -7.05 6.12 22.70 0.14 -6.91 16 14 S -0.18 -8.13 20.37 -56.49 -1.15 -9.28 16 15 C 0.09 4.83 4.09 71.24 0.29 5.13 16 16 C -0.54 -31.45 9.13 25.60 0.23 -31.21 16 17 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 18 C 0.01 0.85 5.46 84.65 0.46 1.31 16 19 N -0.92 -55.02 13.29 21.44 0.28 -54.73 16 20 Si 0.98 43.91 29.54 68.60 2.03 45.94 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H 0.10 1.03 8.06 -2.91 -0.02 1.00 16 25 H 0.09 1.13 7.84 -2.91 -0.02 1.11 16 26 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 27 H 0.06 0.86 7.79 -2.38 -0.02 0.84 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 34 H 0.07 1.16 7.95 -2.39 -0.02 1.14 16 35 H 0.40 12.21 7.02 -92.71 -0.65 11.55 16 36 H 0.15 2.97 6.74 -2.91 -0.02 2.95 16 37 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.10 4.48 5.88 -2.91 -0.02 4.46 16 40 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 41 H 0.02 0.92 7.75 -2.39 -0.02 0.91 16 42 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -65.84 360.98 3.94 -61.89 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.33 Total: 23.56 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 4.38 Total: -44.28 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.64 Total: -77.83 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.15 Total: -9.28 kcal Total: -65.84 3.94 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570252776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.695 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds