Wall clock time and date at job start Tue Mar 31 2020 07:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48500 * 109.47482 * 269.99993 * 3 2 1 5 5 H 1.48498 * 109.47182 * 30.00144 * 3 2 1 6 6 H 1.48500 * 109.47099 * 149.99946 * 3 2 1 7 7 C 1.39888 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99708 * 197.93530 * 7 2 1 9 9 C 1.41216 * 120.00344 * 17.92926 * 7 2 1 10 10 C 1.40830 * 120.17440 * 24.55449 * 9 7 2 11 11 C 1.36443 * 119.80860 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18600 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81885 * 179.97438 * 12 11 10 14 14 C 1.42900 * 116.99984 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47192 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47036 * 305.00085 * 15 14 13 17 17 O 1.42905 * 109.46926 * 65.00043 * 15 14 13 18 18 C 1.52993 * 109.47175 * 184.99964 * 15 14 13 19 19 N 1.46900 * 109.47281 * 179.97438 * 18 15 14 20 20 C 1.46897 * 111.00522 * 180.02562 * 19 18 15 21 21 C 1.53787 * 113.61392 * 254.13989 * 20 19 18 22 22 C 1.53959 * 87.01742 * 220.04242 * 21 20 19 23 23 C 1.53774 * 113.61806 * 156.53050 * 20 19 18 24 24 C 1.39315 * 120.36287 * 0.25399 * 12 11 10 25 25 C 1.36437 * 120.18387 * 359.48509 * 24 12 11 26 26 H 0.97002 * 119.99987 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.10036 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.90769 * 179.97438 * 11 10 9 29 29 H 1.09003 * 109.47198 * 60.00055 * 14 13 12 30 30 H 1.08997 * 109.47300 * 299.99734 * 14 13 12 31 31 H 0.96696 * 114.00029 * 59.99873 * 17 15 14 32 32 H 1.09005 * 109.47331 * 59.99978 * 18 15 14 33 33 H 1.08999 * 109.47238 * 299.99998 * 18 15 14 34 34 H 1.00907 * 110.99615 * 56.04789 * 19 18 15 35 35 H 1.09003 * 112.84925 * 25.32945 * 20 19 18 36 36 H 1.09002 * 113.61257 * 334.56300 * 21 20 19 37 37 H 1.09006 * 113.61210 * 105.46837 * 21 20 19 38 38 H 1.08994 * 113.53733 * 270.81065 * 22 21 20 39 39 H 1.09004 * 113.66132 * 139.93064 * 22 21 20 40 40 H 1.09004 * 113.61689 * 254.52814 * 23 20 19 41 41 H 1.08999 * 113.61652 * 25.35002 * 23 20 19 42 42 H 1.08000 * 119.90713 * 179.72356 * 24 12 11 43 43 H 1.08013 * 120.09270 * 180.25504 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2875 9 6 1.3536 -2.4046 -0.3775 10 6 0.2247 -2.3574 -1.2181 11 6 -0.4024 -3.5148 -1.5772 12 6 0.0715 -4.7407 -1.1154 13 8 -0.5581 -5.8869 -1.4767 14 6 -0.0209 -7.1099 -0.9691 15 6 -0.8571 -8.2850 -1.4797 16 1 -1.9032 -8.1277 -1.2172 17 8 -0.7311 -8.3776 -2.9002 18 6 -0.3597 -9.5818 -0.8380 19 7 -1.1629 -10.7100 -1.3278 20 6 -0.7132 -11.9748 -0.7312 21 6 0.0743 -12.8689 -1.7035 22 6 -0.6796 -14.0627 -1.0895 23 6 -1.7935 -13.0691 -0.7198 24 6 1.1849 -4.7957 -0.2797 25 6 1.8266 -3.6480 0.0845 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1443 -1.4078 -1.5767 28 1 -1.2686 -3.4804 -2.2214 29 1 -0.0458 -7.0931 0.1205 30 1 1.0092 -7.2224 -1.3073 31 1 0.1753 -8.5180 -3.2063 32 1 -0.4557 -9.5112 0.2455 33 1 0.6865 -9.7391 -1.1005 34 1 -1.1425 -10.7578 -2.3355 35 1 -0.2209 -11.8372 0.2315 36 1 -0.1670 -12.6925 -2.7517 37 1 1.1472 -12.8835 -1.5116 38 1 -0.1771 -14.4968 -0.2252 39 1 -0.9862 -14.8098 -1.8217 40 1 -2.2264 -13.2451 0.2650 41 1 -2.5472 -12.9467 -1.4976 42 1 1.5433 -5.7497 0.0776 43 1 2.6921 -3.6927 0.7291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571074158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:55 Heat of formation + Delta-G solvation = -55.752115 kcal Electronic energy + Delta-G solvation = -22135.466636 eV Core-core repulsion = 18759.893083 eV Total energy + Delta-G solvation = -3375.573554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.52424 -38.91163 -37.53007 -36.08004 -33.85786 -33.31502 -30.45673 -29.48270 -28.92408 -25.96901 -25.85580 -24.63082 -23.36768 -21.98070 -20.72551 -20.57176 -19.89600 -17.36643 -17.20698 -16.49992 -16.39103 -16.20258 -15.69495 -15.18389 -14.71225 -14.27458 -13.95655 -13.91262 -13.61228 -13.39461 -12.88136 -12.78517 -12.58386 -12.26128 -12.16330 -12.10754 -11.78117 -11.42518 -11.33296 -11.15377 -10.95330 -10.88872 -10.79724 -10.71546 -10.59106 -10.01416 -9.91257 -9.82160 -9.33172 -9.02346 -8.61288 -7.64328 -7.03162 -6.72081 -4.25482 2.77898 2.95040 3.08745 3.11952 3.21614 3.55100 3.95268 4.17159 4.28994 4.36179 4.41674 4.56797 4.61756 4.63783 4.95802 5.00997 5.11275 5.24223 5.33891 5.35764 5.42167 5.46181 5.53916 5.62397 5.67250 5.68961 5.81501 5.98288 6.05747 6.08819 6.23209 6.72289 6.78119 6.97755 7.11230 7.14831 7.18787 7.46226 7.55554 7.61569 7.79132 8.00705 8.20590 8.45520 8.65578 8.90019 8.98866 10.22368 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.053945 B = 0.002257 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.923868 B =12403.273280 C =12621.657121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.112 3.888 16 H 0.114 0.886 17 O -0.550 6.550 18 C 0.031 3.969 19 N -0.673 5.673 20 C 0.065 3.935 21 C -0.172 4.172 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.168 4.168 25 C -0.199 4.199 26 H 0.280 0.720 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.369 0.631 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.350 0.650 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -20.112 -1.809 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.038 4.038 15 C 0.052 3.948 16 H 0.132 0.868 17 O -0.354 6.354 18 C -0.098 4.098 19 N -0.305 5.305 20 C -0.045 4.045 21 C -0.211 4.211 22 C -0.181 4.181 23 C -0.168 4.168 24 C -0.187 4.187 25 C -0.219 4.219 26 H 0.091 0.909 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.215 0.785 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.171 0.829 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.693 -19.747 -1.419 19.870 hybrid contribution 2.072 0.483 -0.095 2.130 sum 0.380 -19.265 -1.514 19.328 Atomic orbital electron populations 1.69838 1.07494 1.29142 1.35975 1.25885 0.94731 1.01235 0.92404 0.86318 0.80424 0.80715 0.79264 1.19324 1.20387 1.18738 1.19461 0.98091 0.91244 1.40566 0.90558 1.17600 0.91877 0.92114 0.89885 1.20990 0.98482 0.96324 0.99484 1.19851 1.00824 0.90224 1.02884 1.18625 0.97003 0.84855 1.04727 1.85889 1.54458 1.12010 1.70919 1.23091 0.96922 0.85181 0.98624 1.21982 1.01704 0.90416 0.80699 0.86805 1.86649 1.32599 1.95307 1.20874 1.22561 0.95025 0.91249 1.01013 1.60288 1.55157 1.01855 1.13165 1.23094 0.95686 0.87885 0.97882 1.23707 0.99787 0.97853 0.99755 1.22748 0.98018 0.96440 1.00848 1.23038 0.96883 0.94629 1.02218 1.20390 0.98048 0.97715 1.02559 1.20553 1.03124 0.92542 1.05639 0.90907 0.85642 0.88406 0.92349 0.93106 0.78497 0.89812 0.94708 0.82936 0.88658 0.89900 0.91671 0.90257 0.91317 0.91407 0.89633 0.88991 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 10.96 55.54 0.61 -20.20 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.78 29.60 -169.99 -5.03 13.74 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.36 5.57 -106.81 -0.60 1.76 16 10 C -0.13 -3.53 8.64 -39.25 -0.34 -3.86 16 11 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 O -0.32 -6.58 10.09 -23.57 -0.24 -6.81 16 14 C 0.04 0.60 4.36 37.16 0.16 0.76 16 15 C 0.11 1.40 3.52 -26.73 -0.09 1.31 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 17 O -0.55 -7.14 12.64 -40.08 -0.51 -7.65 16 18 C 0.03 0.30 5.24 -3.83 -0.02 0.28 16 19 N -0.67 -6.38 6.61 -105.87 -0.70 -7.08 16 20 C 0.07 0.52 4.16 -66.90 -0.28 0.24 16 21 C -0.17 -1.19 7.72 -25.82 -0.20 -1.39 16 22 C -0.14 -0.91 8.09 -25.82 -0.21 -1.12 16 23 C -0.13 -0.96 7.88 -25.92 -0.20 -1.17 16 24 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 25 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.13 3.38 6.16 -52.48 -0.32 3.06 16 28 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.06 0.87 7.63 -51.93 -0.40 0.47 16 30 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 31 H 0.37 3.51 9.04 45.56 0.41 3.92 16 32 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.35 3.28 7.60 -39.29 -0.30 2.98 16 35 H 0.10 0.75 7.88 -51.93 -0.41 0.34 16 36 H 0.08 0.57 7.83 -51.93 -0.41 0.16 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 43 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -29.31 353.44 -10.07 -39.38 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.92 Total: 10.66 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -3.60 Total: -27.36 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: -0.09 Total: -27.29 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.74 Total: -14.46 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.31 -10.07 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571074158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.371 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds