Wall clock time and date at job start Tue Mar 31 2020 07:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48500 * 109.47482 * 269.99993 * 3 2 1 5 5 H 1.48498 * 109.47182 * 30.00144 * 3 2 1 6 6 H 1.48500 * 109.47099 * 149.99946 * 3 2 1 7 7 C 1.39888 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99708 * 197.93530 * 7 2 1 9 9 C 1.41216 * 120.00344 * 17.92926 * 7 2 1 10 10 C 1.40830 * 120.17440 * 24.55449 * 9 7 2 11 11 C 1.36443 * 119.80860 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18600 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81885 * 179.97438 * 12 11 10 14 14 C 1.42900 * 116.99984 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47192 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47036 * 305.00085 * 15 14 13 17 17 O 1.42905 * 109.46926 * 65.00043 * 15 14 13 18 18 C 1.52993 * 109.47175 * 184.99964 * 15 14 13 19 19 N 1.46900 * 109.47281 * 179.97438 * 18 15 14 20 20 C 1.46897 * 111.00522 * 180.02562 * 19 18 15 21 21 C 1.53787 * 113.61392 * 254.13989 * 20 19 18 22 22 C 1.53959 * 87.01742 * 220.04242 * 21 20 19 23 23 C 1.53774 * 113.61806 * 156.53050 * 20 19 18 24 24 C 1.39315 * 120.36287 * 0.25399 * 12 11 10 25 25 C 1.36437 * 120.18387 * 359.48509 * 24 12 11 26 26 H 0.97002 * 119.99987 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.10036 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.90769 * 179.97438 * 11 10 9 29 29 H 1.09003 * 109.47198 * 60.00055 * 14 13 12 30 30 H 1.08997 * 109.47300 * 299.99734 * 14 13 12 31 31 H 0.96696 * 114.00029 * 59.99873 * 17 15 14 32 32 H 1.09005 * 109.47331 * 59.99978 * 18 15 14 33 33 H 1.08999 * 109.47238 * 299.99998 * 18 15 14 34 34 H 1.00907 * 110.99615 * 56.04789 * 19 18 15 35 35 H 1.09003 * 112.84925 * 25.32945 * 20 19 18 36 36 H 1.09002 * 113.61257 * 334.56300 * 21 20 19 37 37 H 1.09006 * 113.61210 * 105.46837 * 21 20 19 38 38 H 1.08994 * 113.53733 * 270.81065 * 22 21 20 39 39 H 1.09004 * 113.66132 * 139.93064 * 22 21 20 40 40 H 1.09004 * 113.61689 * 254.52814 * 23 20 19 41 41 H 1.08999 * 113.61652 * 25.35002 * 23 20 19 42 42 H 1.08000 * 119.90713 * 179.72356 * 24 12 11 43 43 H 1.08013 * 120.09270 * 180.25504 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2875 9 6 1.3536 -2.4046 -0.3775 10 6 0.2247 -2.3574 -1.2181 11 6 -0.4024 -3.5148 -1.5772 12 6 0.0715 -4.7407 -1.1154 13 8 -0.5581 -5.8869 -1.4767 14 6 -0.0209 -7.1099 -0.9691 15 6 -0.8571 -8.2850 -1.4797 16 1 -1.9032 -8.1277 -1.2172 17 8 -0.7311 -8.3776 -2.9002 18 6 -0.3597 -9.5818 -0.8380 19 7 -1.1629 -10.7100 -1.3278 20 6 -0.7132 -11.9748 -0.7312 21 6 0.0743 -12.8689 -1.7035 22 6 -0.6796 -14.0627 -1.0895 23 6 -1.7935 -13.0691 -0.7198 24 6 1.1849 -4.7957 -0.2797 25 6 1.8266 -3.6480 0.0845 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1443 -1.4078 -1.5767 28 1 -1.2686 -3.4804 -2.2214 29 1 -0.0458 -7.0931 0.1205 30 1 1.0092 -7.2224 -1.3073 31 1 0.1753 -8.5180 -3.2063 32 1 -0.4557 -9.5112 0.2455 33 1 0.6865 -9.7391 -1.1005 34 1 -1.1425 -10.7578 -2.3355 35 1 -0.2209 -11.8372 0.2315 36 1 -0.1670 -12.6925 -2.7517 37 1 1.1472 -12.8835 -1.5116 38 1 -0.1771 -14.4968 -0.2252 39 1 -0.9862 -14.8098 -1.8217 40 1 -2.2264 -13.2451 0.2650 41 1 -2.5472 -12.9467 -1.4976 42 1 1.5433 -5.7497 0.0776 43 1 2.6921 -3.6927 0.7291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571074158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:54 Heat of formation + Delta-G solvation = -74.814272 kcal Electronic energy + Delta-G solvation = -22136.293233 eV Core-core repulsion = 18759.893083 eV Total energy + Delta-G solvation = -3376.400151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69842 -39.99354 -38.79740 -37.64407 -35.18933 -34.63524 -31.96926 -31.13300 -30.61829 -27.15781 -26.47237 -26.20742 -24.21384 -23.15984 -22.45637 -22.22911 -20.50322 -19.26099 -18.72833 -17.66659 -17.46596 -17.06897 -16.87934 -16.46724 -15.90046 -15.75000 -15.58813 -14.95039 -14.88794 -14.43435 -14.16585 -14.06280 -13.90656 -13.55754 -13.37040 -13.22598 -13.02251 -12.84667 -12.79805 -12.61240 -12.38949 -11.97529 -11.92720 -11.68722 -11.59675 -11.41380 -11.35883 -11.17369 -10.88881 -10.87386 -9.57045 -9.29717 -8.93310 -8.59911 -6.23259 0.94251 1.01864 1.39749 1.52763 1.53021 2.22587 2.39271 2.72082 3.26035 3.47000 3.69455 3.70869 3.78859 3.94921 4.00720 4.02040 4.05396 4.11255 4.28264 4.35188 4.38009 4.45900 4.63898 4.69030 4.83453 4.86306 4.87993 5.03068 5.05462 5.07692 5.13797 5.21175 5.26430 5.28049 5.44544 5.58157 5.63844 5.87748 6.05253 6.10744 6.25731 6.44164 6.56142 6.76974 6.82039 6.94588 7.09745 8.36713 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.053945 B = 0.002257 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.923868 B =12403.273280 C =12621.657121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.000 4.000 13 O -0.332 6.332 14 C 0.030 3.970 15 C 0.123 3.877 16 H 0.096 0.904 17 O -0.566 6.566 18 C 0.042 3.958 19 N -0.684 5.684 20 C 0.061 3.939 21 C -0.168 4.168 22 C -0.137 4.137 23 C -0.132 4.132 24 C -0.164 4.164 25 C -0.208 4.208 26 H 0.287 0.713 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.384 0.616 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.350 0.650 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -21.546 -1.511 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.044 4.044 13 O -0.248 6.248 14 C -0.046 4.046 15 C 0.063 3.937 16 H 0.114 0.886 17 O -0.372 6.372 18 C -0.087 4.087 19 N -0.315 5.315 20 C -0.049 4.049 21 C -0.207 4.207 22 C -0.175 4.175 23 C -0.171 4.171 24 C -0.183 4.183 25 C -0.227 4.227 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.170 0.830 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.147 0.853 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.635 -21.220 -1.122 21.259 hybrid contribution 1.676 0.731 -0.214 1.841 sum 1.041 -20.488 -1.336 20.558 Atomic orbital electron populations 1.69897 1.08999 1.30477 1.36472 1.26766 0.95501 1.04575 0.91380 0.85181 0.79033 0.75910 0.79426 1.18806 1.19415 1.18129 1.19713 0.98373 0.92371 1.42339 0.90504 1.17965 0.92648 0.93425 0.90789 1.20907 0.99373 0.96372 1.00615 1.20018 1.01228 0.90746 1.03392 1.18694 0.96648 0.85490 1.03563 1.85882 1.54867 1.12796 1.71229 1.23490 0.98235 0.83553 0.99325 1.21838 1.00334 0.90740 0.80800 0.88633 1.86616 1.34205 1.95331 1.21057 1.22417 0.95688 0.89746 1.00871 1.60282 1.55565 1.02394 1.13274 1.23180 0.96203 0.87325 0.98237 1.23667 0.99915 0.97613 0.99478 1.22743 0.97308 0.96237 1.01202 1.23044 0.96979 0.95002 1.02056 1.20698 0.97261 0.98713 1.01621 1.20813 1.03665 0.92551 1.05718 0.90213 0.87254 0.87617 0.91416 0.91480 0.76708 0.89368 0.93140 0.82972 0.88342 0.89940 0.91256 0.89445 0.90827 0.91362 0.90357 0.85259 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.40 10.96 21.82 0.24 -44.16 16 2 C 0.03 1.62 5.13 85.23 0.44 2.05 16 3 Si 0.98 38.65 29.60 68.60 2.03 40.68 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.05 2.96 5.57 -21.28 -0.12 2.84 16 10 C -0.15 -8.36 8.64 22.48 0.19 -8.16 16 11 C -0.13 -6.77 9.92 22.11 0.22 -6.55 16 12 C 0.00 0.00 6.71 22.79 0.15 0.15 16 13 O -0.33 -13.31 10.09 -85.27 -0.86 -14.17 16 14 C 0.03 0.85 4.36 71.98 0.31 1.17 16 15 C 0.12 2.86 3.52 30.59 0.11 2.97 16 16 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 17 O -0.57 -13.69 12.64 -144.34 -1.82 -15.52 16 18 C 0.04 0.72 5.24 86.30 0.45 1.18 16 19 N -0.68 -11.71 6.61 -488.86 -3.23 -14.94 16 20 C 0.06 0.85 4.16 45.44 0.19 1.04 16 21 C -0.17 -1.97 7.72 31.18 0.24 -1.73 16 22 C -0.14 -1.47 8.09 31.18 0.25 -1.22 16 23 C -0.13 -1.78 7.88 31.12 0.25 -1.53 16 24 C -0.16 -7.19 8.96 22.11 0.20 -6.99 16 25 C -0.21 -10.20 9.74 22.48 0.22 -9.98 16 26 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 27 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.07 1.81 7.63 -2.39 -0.02 1.79 16 30 H 0.07 1.70 7.66 -2.39 -0.02 1.68 16 31 H 0.38 6.45 9.04 -74.06 -0.67 5.78 16 32 H 0.09 1.45 8.13 -2.38 -0.02 1.43 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.35 5.98 7.60 -89.69 -0.68 5.30 16 35 H 0.10 1.33 7.88 -2.39 -0.02 1.31 16 36 H 0.08 0.98 7.83 -2.39 -0.02 0.96 16 37 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 43 H 0.11 4.84 8.06 -2.90 -0.02 4.81 16 Total: -1.00 -63.53 353.44 -0.67 -64.20 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.34 Total: 35.58 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 3.32 Total: -51.67 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -2.99 Total: -59.10 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -2.68 Total: -29.69 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -63.53 -0.67 -64.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571074158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.613 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds