Wall clock time and date at job start Tue Mar 31 2020 07:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48506 * 109.46956 * 274.66720 * 3 2 1 5 5 H 1.48492 * 109.47189 * 34.66597 * 3 2 1 6 6 H 1.48503 * 109.47054 * 154.66928 * 3 2 1 7 7 C 1.39945 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00095 * 162.22806 * 7 2 1 9 9 C 1.41399 * 119.99859 * 342.22685 * 7 2 1 10 10 C 1.40721 * 120.24342 * 155.28704 * 9 7 2 11 11 C 1.37614 * 119.74327 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24942 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74803 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.46890 * 90.00633 * 13 12 11 15 15 C 1.46850 * 110.99286 * 45.74738 * 14 13 12 16 16 C 1.53039 * 109.52213 * 185.79734 * 15 14 13 17 17 C 1.53118 * 109.31508 * 300.88678 * 16 15 14 18 18 H 1.08997 * 109.52131 * 297.66713 * 17 16 15 19 19 C 1.52993 * 109.52786 * 177.53456 * 17 16 15 20 20 O 1.42900 * 109.46896 * 64.99993 * 19 17 16 21 21 C 1.53127 * 109.16107 * 57.62912 * 17 16 15 22 22 H 1.08995 * 109.50148 * 62.32614 * 21 17 16 23 23 O 1.42893 * 109.50310 * 182.40855 * 21 17 16 24 24 C 1.46843 * 110.99876 * 169.99694 * 14 13 12 25 25 C 1.38630 * 120.50012 * 0.26413 * 12 11 10 26 26 C 1.37613 * 120.25038 * 359.43597 * 25 12 11 27 27 H 0.97005 * 119.99702 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.12589 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87283 * 180.02562 * 11 10 9 30 30 H 1.09004 * 109.47218 * 330.00563 * 13 12 11 31 31 H 1.08994 * 109.47330 * 210.00637 * 13 12 11 32 32 H 1.08997 * 109.42849 * 65.81175 * 15 14 13 33 33 H 1.08999 * 109.49755 * 305.83627 * 15 14 13 34 34 H 1.08995 * 109.50550 * 180.92033 * 16 15 14 35 35 H 1.09005 * 109.49780 * 60.84143 * 16 15 14 36 36 H 1.08996 * 109.47617 * 184.99868 * 19 17 16 37 37 H 1.08997 * 109.47097 * 305.00364 * 19 17 16 38 38 H 0.96696 * 114.00432 * 180.02562 * 20 19 17 39 39 H 0.96703 * 113.99920 * 180.02562 * 23 21 17 40 40 H 1.08999 * 109.46072 * 54.14576 * 24 14 13 41 41 H 1.08995 * 109.46505 * 294.17714 * 24 14 13 42 42 H 1.08009 * 119.87354 * 179.69999 * 25 12 11 43 43 H 1.08004 * 120.13277 * 180.27594 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3910 2.1033 -1.3955 5 1 1.4925 2.6221 0.7963 6 1 3.5857 1.4136 0.5990 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2342 -0.2860 9 6 1.3515 -2.4074 0.3727 10 6 1.8217 -3.6493 -0.0930 11 6 1.1747 -4.8064 0.2763 12 6 0.0634 -4.7516 1.1034 13 6 -0.6368 -6.0257 1.5002 14 7 -0.0433 -6.5450 2.7396 15 6 0.1316 -5.4736 3.7284 16 6 0.8812 -6.0188 4.9462 17 6 0.0848 -7.1765 5.5545 18 1 -0.8827 -6.8116 5.8991 19 6 0.8594 -7.7652 6.7352 20 8 0.9591 -6.7888 7.7739 21 6 -0.1241 -8.2570 4.4898 22 1 0.8428 -8.6493 4.1749 23 8 -0.9146 -9.3159 5.0334 24 6 -0.8455 -7.6471 3.2858 25 6 -0.4121 -3.5333 1.5632 26 6 0.2228 -2.3640 1.2118 27 1 -0.4850 0.8401 0.0004 28 1 2.6870 -3.6942 -0.7377 29 1 1.5340 -5.7607 -0.0796 30 1 -0.5249 -6.7643 0.7064 31 1 -1.6956 -5.8234 1.6615 32 1 -0.8456 -5.1040 4.0392 33 1 0.7036 -4.6587 3.2847 34 1 0.9964 -5.2275 5.6869 35 1 1.8642 -6.3754 4.6386 36 1 0.3356 -8.6438 7.1117 37 1 1.8591 -8.0507 6.4078 38 1 1.4394 -7.0938 8.5557 39 1 -1.0866 -10.0370 4.4125 40 1 -0.9831 -8.4104 2.5199 41 1 -1.8181 -7.2677 3.5990 42 1 -1.2816 -3.5021 2.2032 43 1 -0.1467 -1.4163 1.5748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576618542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:04 Heat of formation + Delta-G solvation = -88.328677 kcal Electronic energy + Delta-G solvation = -23361.413126 eV Core-core repulsion = 19984.426947 eV Total energy + Delta-G solvation = -3376.986179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.63668 -37.82250 -36.68549 -36.06706 -33.93459 -32.92827 -30.41225 -29.55396 -29.22030 -27.59088 -25.49149 -23.51277 -22.85376 -21.55075 -20.89519 -19.85352 -19.57537 -17.45474 -17.30586 -17.29483 -15.65418 -15.34882 -15.18484 -15.05273 -14.47628 -14.17423 -14.08983 -13.65997 -13.43626 -13.26747 -12.95027 -12.58354 -12.28556 -12.05283 -11.93240 -11.87000 -11.63181 -11.39109 -11.10798 -10.99227 -10.71791 -10.63909 -10.47755 -10.38673 -10.25979 -10.03886 -9.86468 -9.53690 -9.38766 -9.11968 -7.99733 -7.43570 -7.29035 -6.77884 -4.36109 2.71397 3.05663 3.07465 3.10001 3.16878 3.91357 3.92650 4.10768 4.37501 4.67938 4.76866 4.90231 5.06956 5.24792 5.32841 5.38590 5.51917 5.54007 5.67649 5.75334 5.81765 5.86528 5.92566 5.97549 6.06754 6.25283 6.27489 6.36309 6.40501 6.49595 6.56453 6.93778 7.06443 7.24143 7.35833 7.36478 7.43985 7.53512 7.57748 7.60734 7.87642 8.04476 8.12088 8.29202 8.62680 8.88549 8.96419 10.16487 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.003497 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.348600 B = 8003.832247 C = 8701.954231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.217 4.217 13 C 0.121 3.879 14 N -0.530 5.530 15 C 0.052 3.948 16 C -0.105 4.105 17 C -0.079 4.079 18 H 0.078 0.922 19 C 0.084 3.916 20 O -0.573 6.573 21 C 0.115 3.885 22 H 0.065 0.935 23 O -0.569 6.569 24 C 0.026 3.974 25 C -0.093 4.093 26 C -0.166 4.166 27 H 0.280 0.720 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.376 0.624 39 H 0.377 0.623 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -12.865 9.049 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.249 4.249 11 C -0.087 4.087 12 C -0.219 4.219 13 C -0.005 4.005 14 N -0.256 5.256 15 C -0.075 4.075 16 C -0.143 4.143 17 C -0.097 4.097 18 H 0.096 0.904 19 C 0.007 3.993 20 O -0.378 6.378 21 C 0.056 3.944 22 H 0.083 0.917 23 O -0.374 6.374 24 C -0.103 4.103 25 C -0.112 4.112 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.222 0.778 39 H 0.224 0.776 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.477 -12.161 9.019 15.148 hybrid contribution -0.281 0.376 -0.074 0.475 sum -0.758 -11.786 8.945 14.815 Atomic orbital electron populations 1.69829 1.07610 1.29197 1.35123 1.25911 0.94700 1.01321 0.92194 0.86337 0.80826 0.80757 0.79046 1.19589 1.20034 1.18388 1.19610 0.98122 0.91313 1.40141 0.90454 1.17623 0.90973 0.92027 0.88244 1.20967 1.03918 0.92939 1.07086 1.20325 0.94919 0.96307 0.97143 1.18827 1.01883 0.92268 1.08875 1.20735 0.94603 0.95023 0.90155 1.62081 1.48746 1.09499 1.05227 1.22233 0.99136 0.94686 0.91492 1.21594 0.98974 0.96982 0.96763 1.21167 1.00211 0.95120 0.93237 0.90363 1.22160 0.98550 0.90578 0.88028 1.86490 1.79824 1.42344 1.29108 1.21747 0.93490 0.86996 0.92201 0.91660 1.86501 1.74769 1.33023 1.43126 1.22715 0.95437 0.95643 0.96486 1.20527 0.98315 0.92844 0.99494 1.21274 0.99400 0.96623 1.01196 0.90893 0.89103 0.89424 0.91639 0.95820 0.95553 0.88149 0.90414 0.91246 0.93087 0.93854 0.77775 0.77588 0.90921 0.94583 0.89970 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.40 10.97 55.55 0.61 -19.79 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.21 9.05 -37.74 -0.34 -12.56 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.11 3.01 5.57 -106.82 -0.60 2.41 16 10 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 12 C -0.22 -4.59 4.13 -104.33 -0.43 -5.03 16 13 C 0.12 2.13 5.42 -4.97 -0.03 2.10 16 14 N -0.53 -8.47 4.80 -236.11 -1.13 -9.60 16 15 C 0.05 0.87 4.57 -3.83 -0.02 0.85 16 16 C -0.11 -1.52 5.24 -26.65 -0.14 -1.66 16 17 C -0.08 -1.03 2.22 -90.50 -0.20 -1.23 16 18 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.08 0.96 6.37 37.15 0.24 1.19 16 20 O -0.57 -6.59 13.25 -35.23 -0.47 -7.06 16 21 C 0.11 1.36 3.04 -26.64 -0.08 1.28 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 O -0.57 -6.05 12.68 -35.23 -0.45 -6.50 16 24 C 0.03 0.34 5.05 -3.83 -0.02 0.32 16 25 C -0.09 -2.12 7.77 -39.66 -0.31 -2.42 16 26 C -0.17 -4.24 8.70 -38.87 -0.34 -4.58 16 27 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 28 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.96 5.66 -51.93 -0.29 1.66 16 34 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.56 7.63 -51.93 -0.40 0.16 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.38 2.48 9.12 45.56 0.42 2.90 16 39 H 0.38 2.41 9.08 45.56 0.41 2.82 16 40 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 43 H 0.12 3.09 6.17 -52.48 -0.32 2.77 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -29.06 343.37 -9.62 -38.68 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.21 Total: 10.91 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -3.12 Total: -25.35 kcal Atomic # 7 Polarization: -28.87 SS G_CDS: -0.52 Total: -29.39 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.91 Total: -13.56 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.06 -9.62 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576618542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.651 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds