Wall clock time and date at job start Tue Mar 31 2020 07:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48506 * 109.46956 * 274.66720 * 3 2 1 5 5 H 1.48492 * 109.47189 * 34.66597 * 3 2 1 6 6 H 1.48503 * 109.47054 * 154.66928 * 3 2 1 7 7 C 1.39945 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00095 * 162.22806 * 7 2 1 9 9 C 1.41399 * 119.99859 * 342.22685 * 7 2 1 10 10 C 1.40721 * 120.24342 * 155.28704 * 9 7 2 11 11 C 1.37614 * 119.74327 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24942 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74803 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.46890 * 90.00633 * 13 12 11 15 15 C 1.46850 * 110.99286 * 45.74738 * 14 13 12 16 16 C 1.53039 * 109.52213 * 185.79734 * 15 14 13 17 17 C 1.53118 * 109.31508 * 300.88678 * 16 15 14 18 18 H 1.08997 * 109.52131 * 297.66713 * 17 16 15 19 19 C 1.52993 * 109.52786 * 177.53456 * 17 16 15 20 20 O 1.42900 * 109.46896 * 64.99993 * 19 17 16 21 21 C 1.53127 * 109.16107 * 57.62912 * 17 16 15 22 22 H 1.08995 * 109.50148 * 62.32614 * 21 17 16 23 23 O 1.42893 * 109.50310 * 182.40855 * 21 17 16 24 24 C 1.46843 * 110.99876 * 169.99694 * 14 13 12 25 25 C 1.38630 * 120.50012 * 0.26413 * 12 11 10 26 26 C 1.37613 * 120.25038 * 359.43597 * 25 12 11 27 27 H 0.97005 * 119.99702 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.12589 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.87283 * 180.02562 * 11 10 9 30 30 H 1.09004 * 109.47218 * 330.00563 * 13 12 11 31 31 H 1.08994 * 109.47330 * 210.00637 * 13 12 11 32 32 H 1.08997 * 109.42849 * 65.81175 * 15 14 13 33 33 H 1.08999 * 109.49755 * 305.83627 * 15 14 13 34 34 H 1.08995 * 109.50550 * 180.92033 * 16 15 14 35 35 H 1.09005 * 109.49780 * 60.84143 * 16 15 14 36 36 H 1.08996 * 109.47617 * 184.99868 * 19 17 16 37 37 H 1.08997 * 109.47097 * 305.00364 * 19 17 16 38 38 H 0.96696 * 114.00432 * 180.02562 * 20 19 17 39 39 H 0.96703 * 113.99920 * 180.02562 * 23 21 17 40 40 H 1.08999 * 109.46072 * 54.14576 * 24 14 13 41 41 H 1.08995 * 109.46505 * 294.17714 * 24 14 13 42 42 H 1.08009 * 119.87354 * 179.69999 * 25 12 11 43 43 H 1.08004 * 120.13277 * 180.27594 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3910 2.1033 -1.3955 5 1 1.4925 2.6221 0.7963 6 1 3.5857 1.4136 0.5990 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2342 -0.2860 9 6 1.3515 -2.4074 0.3727 10 6 1.8217 -3.6493 -0.0930 11 6 1.1747 -4.8064 0.2763 12 6 0.0634 -4.7516 1.1034 13 6 -0.6368 -6.0257 1.5002 14 7 -0.0433 -6.5450 2.7396 15 6 0.1316 -5.4736 3.7284 16 6 0.8812 -6.0188 4.9462 17 6 0.0848 -7.1765 5.5545 18 1 -0.8827 -6.8116 5.8991 19 6 0.8594 -7.7652 6.7352 20 8 0.9591 -6.7888 7.7739 21 6 -0.1241 -8.2570 4.4898 22 1 0.8428 -8.6493 4.1749 23 8 -0.9146 -9.3159 5.0334 24 6 -0.8455 -7.6471 3.2858 25 6 -0.4121 -3.5333 1.5632 26 6 0.2228 -2.3640 1.2118 27 1 -0.4850 0.8401 0.0004 28 1 2.6870 -3.6942 -0.7377 29 1 1.5340 -5.7607 -0.0796 30 1 -0.5249 -6.7643 0.7064 31 1 -1.6956 -5.8234 1.6615 32 1 -0.8456 -5.1040 4.0392 33 1 0.7036 -4.6587 3.2847 34 1 0.9964 -5.2275 5.6869 35 1 1.8642 -6.3754 4.6386 36 1 0.3356 -8.6438 7.1117 37 1 1.8591 -8.0507 6.4078 38 1 1.4394 -7.0938 8.5557 39 1 -1.0866 -10.0370 4.4125 40 1 -0.9831 -8.4104 2.5199 41 1 -1.8181 -7.2677 3.5990 42 1 -1.2816 -3.5021 2.2032 43 1 -0.1467 -1.4163 1.5748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576618542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:00 Heat of formation + Delta-G solvation = -110.223930 kcal Electronic energy + Delta-G solvation = -23362.362576 eV Core-core repulsion = 19984.426947 eV Total energy + Delta-G solvation = -3377.935629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.81082 -39.43078 -37.68194 -37.18418 -35.61343 -34.22199 -32.04175 -31.19656 -30.60395 -29.04844 -26.95059 -24.96976 -23.99222 -23.02403 -22.52218 -21.43703 -20.79211 -19.21405 -18.32630 -18.20219 -17.17687 -16.78776 -16.51791 -16.16687 -15.82221 -15.54193 -15.44568 -15.24503 -14.80350 -14.50966 -14.26936 -13.94986 -13.81847 -13.49024 -13.33852 -13.25777 -12.93548 -12.84406 -12.73826 -12.58670 -12.34982 -12.06380 -11.88925 -11.66021 -11.39374 -11.30042 -11.26076 -10.98665 -10.91570 -10.75346 -9.40504 -9.29401 -9.08988 -8.63990 -6.32821 0.93230 1.16766 1.37365 1.47539 1.53483 2.20308 2.64462 2.96734 3.25135 3.39397 3.72208 3.78626 3.91624 4.10463 4.15832 4.29741 4.30814 4.36719 4.42931 4.47980 4.48286 4.57582 4.66536 4.81735 4.82027 4.84454 4.88321 4.96632 5.05317 5.11067 5.16738 5.21849 5.33589 5.38445 5.47784 5.71543 5.94875 6.05798 6.10903 6.22874 6.28127 6.40365 6.70881 6.88787 6.93304 6.95057 7.04628 8.32788 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.003497 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.348600 B = 8003.832247 C = 8701.954231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.082 3.918 10 C -0.244 4.244 11 C -0.069 4.069 12 C -0.201 4.201 13 C 0.124 3.876 14 N -0.530 5.530 15 C 0.057 3.943 16 C -0.096 4.096 17 C -0.080 4.080 18 H 0.059 0.941 19 C 0.089 3.911 20 O -0.594 6.594 21 C 0.126 3.874 22 H 0.075 0.925 23 O -0.575 6.575 24 C 0.026 3.974 25 C -0.093 4.093 26 C -0.189 4.189 27 H 0.287 0.713 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.027 0.973 32 H 0.016 0.984 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.396 0.604 39 H 0.398 0.602 40 H 0.098 0.902 41 H 0.027 0.973 42 H 0.093 0.907 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -14.983 9.556 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.080 3.920 10 C -0.264 4.264 11 C -0.088 4.088 12 C -0.202 4.202 13 C -0.002 4.002 14 N -0.255 5.255 15 C -0.071 4.071 16 C -0.134 4.134 17 C -0.099 4.099 18 H 0.077 0.923 19 C 0.012 3.988 20 O -0.402 6.402 21 C 0.067 3.933 22 H 0.093 0.907 23 O -0.382 6.382 24 C -0.102 4.102 25 C -0.112 4.112 26 C -0.209 4.209 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.135 0.865 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.248 0.752 40 H 0.116 0.884 41 H 0.046 0.954 42 H 0.111 0.889 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.302 -14.322 9.534 17.208 hybrid contribution -0.416 0.856 -0.172 0.967 sum -0.718 -13.466 9.362 16.416 Atomic orbital electron populations 1.69883 1.09026 1.30446 1.35891 1.26740 0.95453 1.04484 0.91194 0.85233 0.79232 0.76097 0.79401 1.18643 1.19104 1.18272 1.19850 0.98325 0.92657 1.42373 0.90760 1.17944 0.91804 0.93108 0.89157 1.21175 1.04485 0.93236 1.07467 1.20636 0.94685 0.96751 0.96718 1.19218 1.00934 0.93340 1.06726 1.20713 0.94238 0.93624 0.91629 1.62043 1.49332 1.09589 1.04570 1.22089 0.98315 0.94307 0.92395 1.21466 0.98978 0.97447 0.95533 1.21143 0.99213 0.95099 0.94460 0.92276 1.22092 0.98977 0.90349 0.87395 1.86443 1.80463 1.43073 1.30226 1.21526 0.93893 0.86966 0.90926 0.90676 1.86472 1.74492 1.33340 1.43930 1.22835 0.94643 0.94953 0.97775 1.20685 0.98388 0.92845 0.99299 1.21206 1.00347 0.96848 1.02463 0.90233 0.88637 0.86485 0.89517 0.95507 0.96558 0.91478 0.91284 0.90990 0.92399 0.92548 0.75391 0.75196 0.88412 0.95430 0.88901 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.11 10.97 21.83 0.24 -43.87 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 38.89 29.59 68.60 2.03 40.92 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.50 -27.68 9.05 23.46 0.21 -27.46 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.51 5.57 -21.29 -0.12 4.39 16 10 C -0.24 -12.09 9.80 22.73 0.22 -11.86 16 11 C -0.07 -3.00 9.67 22.22 0.21 -2.78 16 12 C -0.20 -8.34 4.13 -19.67 -0.08 -8.43 16 13 C 0.12 4.08 5.42 85.56 0.46 4.54 16 14 N -0.53 -15.77 4.80 -900.92 -4.32 -20.09 16 15 C 0.06 1.87 4.57 86.33 0.39 2.27 16 16 C -0.10 -2.70 5.24 30.65 0.16 -2.54 16 17 C -0.08 -1.96 2.22 -10.71 -0.02 -1.98 16 18 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 19 C 0.09 1.82 6.37 71.98 0.46 2.27 16 20 O -0.59 -12.68 13.25 -148.98 -1.97 -14.65 16 21 C 0.13 2.61 3.04 30.65 0.09 2.71 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 O -0.57 -10.20 12.68 -148.98 -1.89 -12.09 16 24 C 0.03 0.61 5.05 86.33 0.44 1.04 16 25 C -0.09 -4.33 7.77 22.22 0.17 -4.16 16 26 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 27 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 28 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.09 2.53 8.08 -2.39 -0.02 2.51 16 31 H 0.03 0.87 8.01 -2.39 -0.02 0.85 16 32 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 2.66 5.66 -2.39 -0.01 2.64 16 34 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.06 1.11 7.63 -2.39 -0.02 1.09 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.40 4.45 9.12 -74.06 -0.68 3.77 16 39 H 0.40 3.44 9.08 -74.06 -0.67 2.77 16 40 H 0.10 1.81 8.12 -2.39 -0.02 1.79 16 41 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 4.02 8.06 -2.91 -0.02 4.00 16 43 H 0.10 5.43 6.17 -2.91 -0.02 5.41 16 Total: -1.00 -64.51 343.37 -3.01 -67.52 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.33 Total: 31.89 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 3.24 Total: -49.63 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -4.08 Total: -63.96 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -3.86 Total: -26.74 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -64.51 -3.01 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576618542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.706 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds