Wall clock time and date at job start Tue Mar 31 2020 07:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46865 * 299.99654 * 3 2 1 6 6 H 1.48497 * 109.47056 * 59.99617 * 3 2 1 7 7 C 1.39941 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00164 * 197.87664 * 7 2 1 9 9 C 1.41390 * 120.00512 * 17.88044 * 7 2 1 10 10 C 1.40722 * 120.24825 * 204.38627 * 9 7 2 11 11 C 1.37617 * 119.74232 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.25374 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74909 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47333 * 89.99834 * 13 12 11 15 15 C 1.46850 * 110.99873 * 293.95551 * 14 13 12 16 16 C 1.53040 * 109.52054 * 174.15599 * 15 14 13 17 17 C 1.53120 * 109.27866 * 59.17762 * 16 15 14 18 18 H 1.09001 * 109.52119 * 62.25234 * 17 16 15 19 19 C 1.52997 * 109.52401 * 182.43724 * 17 16 15 20 20 O 1.42905 * 109.47252 * 294.68650 * 19 17 16 21 21 C 1.53110 * 109.16423 * 302.34731 * 17 16 15 22 22 H 1.09000 * 109.50729 * 177.63219 * 21 17 16 23 23 O 1.42905 * 109.50335 * 297.71226 * 21 17 16 24 24 C 1.46921 * 110.98985 * 169.72437 * 14 13 12 25 25 C 1.38633 * 120.49563 * 0.27259 * 12 11 10 26 26 C 1.37611 * 120.25522 * 359.44771 * 25 12 11 27 27 H 0.96996 * 120.00016 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12462 * 359.95282 * 10 9 7 29 29 H 1.08001 * 119.86623 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47133 * 330.00151 * 13 12 11 31 31 H 1.08995 * 109.47158 * 210.00318 * 13 12 11 32 32 H 1.09004 * 109.46053 * 54.14487 * 15 14 13 33 33 H 1.08998 * 109.45453 * 294.16347 * 15 14 13 34 34 H 1.08998 * 109.50450 * 299.23998 * 16 15 14 35 35 H 1.09004 * 109.53694 * 179.14087 * 16 15 14 36 36 H 1.09004 * 109.47176 * 54.68560 * 19 17 16 37 37 H 1.08998 * 109.47149 * 174.68385 * 19 17 16 38 38 H 0.96697 * 113.99932 * 180.02562 * 20 19 17 39 39 H 0.96697 * 114.00657 * 179.91640 * 23 21 17 40 40 H 1.09001 * 109.45318 * 65.83872 * 24 14 13 41 41 H 1.09000 * 109.51723 * 305.84642 * 24 14 13 42 42 H 1.08010 * 119.86763 * 179.70612 * 25 12 11 43 43 H 1.07997 * 120.12879 * 180.27700 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3964 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3522 -2.4071 -0.3749 10 6 1.8257 -3.6499 0.0849 11 6 1.1792 -4.8066 -0.2865 12 6 0.0659 -4.7507 -1.1107 13 6 -0.6330 -6.0244 -1.5109 14 7 -1.6788 -6.3387 -0.5282 15 6 -1.0929 -6.6578 0.7800 16 6 -2.2099 -6.8363 1.8107 17 6 -3.1399 -7.9653 1.3580 18 1 -2.5813 -8.9000 1.3097 19 6 -4.2929 -8.1082 2.3534 20 8 -3.7807 -8.5338 3.6178 21 6 -3.6987 -7.6310 -0.0277 22 1 -4.3285 -8.4506 -0.3737 23 8 -4.4735 -6.4325 0.0467 24 6 -2.5391 -7.4297 -1.0060 25 6 -0.4056 -3.5323 -1.5746 26 6 0.2215 -2.3625 -1.2114 27 1 -0.4850 0.8400 -0.0004 28 1 2.6933 -3.6958 0.7264 29 1 1.5411 -5.7616 0.0648 30 1 0.0895 -6.8398 -1.5457 31 1 -1.0850 -5.8973 -2.4945 32 1 -0.4371 -5.8449 1.0922 33 1 -0.5174 -7.5804 0.7047 34 1 -2.7775 -5.9097 1.8964 35 1 -1.7761 -7.0881 2.7785 36 1 -4.7941 -7.1471 2.4693 37 1 -5.0039 -8.8463 1.9824 38 1 -4.4578 -8.6458 4.2990 39 1 -4.8581 -6.1597 -0.7975 40 1 -1.9566 -8.3486 -1.0728 41 1 -2.9338 -7.1778 -1.9903 42 1 -1.2710 -3.5009 -2.2201 43 1 -0.1502 -1.4141 -1.5703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576618543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:15 Heat of formation + Delta-G solvation = -85.649411 kcal Electronic energy + Delta-G solvation = -23489.541582 eV Core-core repulsion = 20112.671584 eV Total energy + Delta-G solvation = -3376.869998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.58917 -37.68462 -36.67285 -35.65310 -33.79487 -32.83032 -30.31221 -29.83613 -29.12919 -27.54152 -25.47819 -23.40964 -22.86133 -21.50356 -20.87612 -19.74826 -19.56418 -17.42152 -17.24927 -16.83297 -15.76927 -15.29556 -15.12723 -14.67896 -14.49358 -14.07184 -13.95111 -13.89603 -13.55824 -13.14239 -12.83434 -12.53134 -12.30195 -12.06096 -11.83613 -11.61000 -11.50725 -11.42071 -11.05041 -10.89284 -10.68140 -10.53570 -10.48158 -10.34555 -10.22340 -9.92136 -9.76794 -9.44686 -9.31726 -9.07549 -7.84030 -7.37941 -7.22269 -6.71057 -4.29816 2.77513 3.09772 3.12701 3.15326 3.20047 3.96629 4.07842 4.15845 4.45985 4.72654 4.82070 4.85287 5.09944 5.21385 5.32943 5.42899 5.57711 5.61513 5.63319 5.74747 5.83403 5.84732 5.94262 6.01080 6.08800 6.25456 6.27289 6.41585 6.47418 6.52498 6.68931 7.00887 7.11955 7.34916 7.39872 7.51274 7.53209 7.55457 7.67305 7.79346 7.94025 8.10963 8.20319 8.35664 8.70205 8.94912 9.03558 10.23205 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.003534 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.561523 B = 7920.892008 C = 8192.658881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.227 4.227 11 C -0.085 4.085 12 C -0.206 4.206 13 C 0.120 3.880 14 N -0.519 5.519 15 C 0.056 3.944 16 C -0.102 4.102 17 C -0.080 4.080 18 H 0.079 0.921 19 C 0.086 3.914 20 O -0.575 6.575 21 C 0.118 3.882 22 H 0.052 0.948 23 O -0.548 6.548 24 C 0.023 3.977 25 C -0.078 4.078 26 C -0.167 4.167 27 H 0.279 0.721 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.376 0.624 39 H 0.375 0.625 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 -13.084 0.034 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.247 4.247 11 C -0.104 4.104 12 C -0.207 4.207 13 C -0.006 4.006 14 N -0.243 5.243 15 C -0.072 4.072 16 C -0.139 4.139 17 C -0.098 4.098 18 H 0.098 0.902 19 C 0.008 3.992 20 O -0.380 6.380 21 C 0.059 3.941 22 H 0.070 0.930 23 O -0.353 6.353 24 C -0.106 4.106 25 C -0.097 4.097 26 C -0.187 4.187 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.222 0.778 39 H 0.222 0.778 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.460 -12.527 0.397 15.121 hybrid contribution 0.099 0.003 -0.394 0.406 sum -8.361 -12.524 0.003 15.058 Atomic orbital electron populations 1.69850 1.07541 1.29015 1.35204 1.25899 0.94687 1.01230 0.92333 0.86312 0.81021 0.81157 0.78518 1.18453 1.19741 1.20034 1.19618 0.98115 0.91352 1.40267 0.90546 1.17613 0.91104 0.91929 0.88373 1.20928 1.03790 0.92930 1.07033 1.20343 0.95868 0.96166 0.98010 1.18819 1.00185 0.92960 1.08771 1.20738 0.90984 0.95002 0.93853 1.61981 1.21516 1.37971 1.02858 1.22143 0.96147 0.99589 0.89305 1.21497 0.96323 0.98390 0.97732 1.21201 0.96340 0.99793 0.92501 0.90228 1.22135 0.95181 0.98332 0.83548 1.86476 1.38691 1.90856 1.21950 1.21707 0.90898 0.86939 0.94595 0.93018 1.86532 1.69211 1.43202 1.36346 1.22783 0.95768 0.93729 0.98305 1.20461 0.97600 0.92477 0.99164 1.21294 0.99485 0.96708 1.01164 0.90984 0.89233 0.89997 0.96163 0.91883 0.89028 0.96228 0.90339 0.91444 0.92493 0.94391 0.77760 0.77819 0.94908 0.90760 0.89620 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.83 10.96 55.55 0.61 -20.22 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.52 9.05 -37.75 -0.34 -12.86 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 10 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 11 C -0.09 -1.92 7.84 -39.66 -0.31 -2.23 16 12 C -0.21 -4.49 4.92 -104.33 -0.51 -5.00 16 13 C 0.12 2.15 5.11 -4.98 -0.03 2.12 16 14 N -0.52 -8.65 4.53 -236.05 -1.07 -9.71 16 15 C 0.06 0.94 5.15 -3.83 -0.02 0.92 16 16 C -0.10 -1.57 5.10 -26.65 -0.14 -1.71 16 17 C -0.08 -1.02 2.33 -90.50 -0.21 -1.23 16 18 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 19 C 0.09 0.97 6.18 37.16 0.23 1.20 16 20 O -0.57 -6.56 13.26 -35.23 -0.47 -7.03 16 21 C 0.12 1.39 3.27 -26.65 -0.09 1.30 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 O -0.55 -7.01 11.98 -35.23 -0.42 -7.44 16 24 C 0.02 0.30 5.13 -3.79 -0.02 0.28 16 25 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 26 C -0.17 -4.41 8.70 -38.87 -0.34 -4.74 16 27 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.08 1.66 7.94 -52.49 -0.42 1.24 16 30 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 31 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 32 H 0.09 1.80 5.74 -51.93 -0.30 1.50 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.39 7.80 -51.93 -0.40 0.98 16 35 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 36 H 0.06 0.70 7.79 -51.93 -0.40 0.29 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 2.49 9.12 45.56 0.42 2.91 16 39 H 0.38 3.51 9.08 45.56 0.41 3.92 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 42 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 43 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -30.23 343.16 -9.61 -39.85 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.18 Total: 11.44 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -3.22 Total: -25.92 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: -0.46 Total: -29.94 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.89 Total: -14.47 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.23 -9.61 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576618543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.803 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds