Wall clock time and date at job start Tue Mar 31 2020 07:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46865 * 299.99654 * 3 2 1 6 6 H 1.48497 * 109.47056 * 59.99617 * 3 2 1 7 7 C 1.39941 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00164 * 197.87664 * 7 2 1 9 9 C 1.41390 * 120.00512 * 17.88044 * 7 2 1 10 10 C 1.40722 * 120.24825 * 204.38627 * 9 7 2 11 11 C 1.37617 * 119.74232 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.25374 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74909 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47333 * 89.99834 * 13 12 11 15 15 C 1.46850 * 110.99873 * 293.95551 * 14 13 12 16 16 C 1.53040 * 109.52054 * 174.15599 * 15 14 13 17 17 C 1.53120 * 109.27866 * 59.17762 * 16 15 14 18 18 H 1.09001 * 109.52119 * 62.25234 * 17 16 15 19 19 C 1.52997 * 109.52401 * 182.43724 * 17 16 15 20 20 O 1.42905 * 109.47252 * 294.68650 * 19 17 16 21 21 C 1.53110 * 109.16423 * 302.34731 * 17 16 15 22 22 H 1.09000 * 109.50729 * 177.63219 * 21 17 16 23 23 O 1.42905 * 109.50335 * 297.71226 * 21 17 16 24 24 C 1.46921 * 110.98985 * 169.72437 * 14 13 12 25 25 C 1.38633 * 120.49563 * 0.27259 * 12 11 10 26 26 C 1.37611 * 120.25522 * 359.44771 * 25 12 11 27 27 H 0.96996 * 120.00016 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12462 * 359.95282 * 10 9 7 29 29 H 1.08001 * 119.86623 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47133 * 330.00151 * 13 12 11 31 31 H 1.08995 * 109.47158 * 210.00318 * 13 12 11 32 32 H 1.09004 * 109.46053 * 54.14487 * 15 14 13 33 33 H 1.08998 * 109.45453 * 294.16347 * 15 14 13 34 34 H 1.08998 * 109.50450 * 299.23998 * 16 15 14 35 35 H 1.09004 * 109.53694 * 179.14087 * 16 15 14 36 36 H 1.09004 * 109.47176 * 54.68560 * 19 17 16 37 37 H 1.08998 * 109.47149 * 174.68385 * 19 17 16 38 38 H 0.96697 * 113.99932 * 180.02562 * 20 19 17 39 39 H 0.96697 * 114.00657 * 179.91640 * 23 21 17 40 40 H 1.09001 * 109.45318 * 65.83872 * 24 14 13 41 41 H 1.09000 * 109.51723 * 305.84642 * 24 14 13 42 42 H 1.08010 * 119.86763 * 179.70612 * 25 12 11 43 43 H 1.07997 * 120.12879 * 180.27700 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3964 1.2124 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3522 -2.4071 -0.3749 10 6 1.8257 -3.6499 0.0849 11 6 1.1792 -4.8066 -0.2865 12 6 0.0659 -4.7507 -1.1107 13 6 -0.6330 -6.0244 -1.5109 14 7 -1.6788 -6.3387 -0.5282 15 6 -1.0929 -6.6578 0.7800 16 6 -2.2099 -6.8363 1.8107 17 6 -3.1399 -7.9653 1.3580 18 1 -2.5813 -8.9000 1.3097 19 6 -4.2929 -8.1082 2.3534 20 8 -3.7807 -8.5338 3.6178 21 6 -3.6987 -7.6310 -0.0277 22 1 -4.3285 -8.4506 -0.3737 23 8 -4.4735 -6.4325 0.0467 24 6 -2.5391 -7.4297 -1.0060 25 6 -0.4056 -3.5323 -1.5746 26 6 0.2215 -2.3625 -1.2114 27 1 -0.4850 0.8400 -0.0004 28 1 2.6933 -3.6958 0.7264 29 1 1.5411 -5.7616 0.0648 30 1 0.0895 -6.8398 -1.5457 31 1 -1.0850 -5.8973 -2.4945 32 1 -0.4371 -5.8449 1.0922 33 1 -0.5174 -7.5804 0.7047 34 1 -2.7775 -5.9097 1.8964 35 1 -1.7761 -7.0881 2.7785 36 1 -4.7941 -7.1471 2.4693 37 1 -5.0039 -8.8463 1.9824 38 1 -4.4578 -8.6458 4.2990 39 1 -4.8581 -6.1597 -0.7975 40 1 -1.9566 -8.3486 -1.0728 41 1 -2.9338 -7.1778 -1.9903 42 1 -1.2710 -3.5009 -2.2201 43 1 -0.1502 -1.4141 -1.5703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576618543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:12 Heat of formation + Delta-G solvation = -108.527834 kcal Electronic energy + Delta-G solvation = -23490.533665 eV Core-core repulsion = 20112.671584 eV Total energy + Delta-G solvation = -3377.862081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72758 -39.38359 -37.66372 -36.84573 -35.52175 -34.09699 -31.98729 -31.26817 -30.74316 -29.00965 -26.95507 -24.90169 -24.01104 -22.84310 -22.65782 -21.45282 -20.66082 -19.20306 -18.28427 -17.81307 -17.21487 -16.91627 -16.27607 -16.05911 -15.65877 -15.50421 -15.38099 -15.18916 -14.99059 -14.56608 -14.24596 -13.92708 -13.77703 -13.47414 -13.35601 -13.23937 -12.88820 -12.73233 -12.66182 -12.43842 -12.24849 -12.05861 -11.89116 -11.60980 -11.41859 -11.28782 -11.22572 -10.98422 -10.79863 -10.60525 -9.31236 -9.25830 -8.98958 -8.61569 -6.31427 0.96832 1.17136 1.37530 1.49749 1.53302 2.21489 2.67431 3.12003 3.28336 3.51382 3.77641 3.82524 3.91930 4.06630 4.25389 4.31978 4.34145 4.43265 4.47487 4.52733 4.58568 4.59502 4.66551 4.74758 4.80973 4.87784 4.90779 4.97225 5.07558 5.10680 5.17838 5.22773 5.40313 5.46162 5.49451 5.73429 5.97342 6.11981 6.18163 6.33075 6.36468 6.42018 6.73665 6.92419 6.96627 7.04494 7.07034 8.35346 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.003534 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.561523 B = 7920.892008 C = 8192.658881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.246 4.246 11 C -0.083 4.083 12 C -0.192 4.192 13 C 0.125 3.875 14 N -0.535 5.535 15 C 0.059 3.941 16 C -0.094 4.094 17 C -0.081 4.081 18 H 0.088 0.912 19 C 0.090 3.910 20 O -0.594 6.594 21 C 0.121 3.879 22 H 0.088 0.912 23 O -0.570 6.570 24 C 0.021 3.979 25 C -0.084 4.084 26 C -0.191 4.191 27 H 0.287 0.713 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.396 0.604 39 H 0.389 0.611 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -15.023 -0.701 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.265 4.265 11 C -0.102 4.102 12 C -0.194 4.194 13 C -0.001 4.001 14 N -0.260 5.260 15 C -0.069 4.069 16 C -0.132 4.132 17 C -0.100 4.100 18 H 0.106 0.894 19 C 0.013 3.987 20 O -0.402 6.402 21 C 0.062 3.938 22 H 0.106 0.894 23 O -0.377 6.377 24 C -0.106 4.106 25 C -0.103 4.103 26 C -0.211 4.211 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.245 0.755 39 H 0.238 0.762 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.592 -14.489 -0.336 17.380 hybrid contribution 0.367 0.436 -0.143 0.588 sum -9.225 -14.053 -0.479 16.817 Atomic orbital electron populations 1.69905 1.09033 1.30374 1.35928 1.26755 0.95460 1.04500 0.91243 0.85172 0.79370 0.76225 0.78981 1.18242 1.18719 1.19074 1.19850 0.98268 0.92740 1.42553 0.90980 1.17946 0.92020 0.92958 0.89350 1.21130 1.04420 0.93372 1.07595 1.20622 0.95703 0.96398 0.97480 1.19292 0.99322 0.94323 1.06446 1.20673 0.91636 0.93011 0.94800 1.61847 1.21246 1.40528 1.02349 1.22026 0.96228 0.98617 0.89993 1.21358 0.96212 0.98386 0.97265 1.21247 0.96353 0.98610 0.93782 0.89412 1.22057 0.94808 0.98445 0.83432 1.86425 1.40298 1.90786 1.22676 1.21783 0.90868 0.87661 0.93481 0.89410 1.86512 1.69433 1.43941 1.37791 1.22936 0.95461 0.92832 0.99411 1.20710 0.97886 0.92394 0.99291 1.21261 1.00346 0.97067 1.02381 0.90241 0.89014 0.87477 0.94839 0.90148 0.92629 0.95011 0.93274 0.92090 0.93923 0.91805 0.75493 0.76207 0.93556 0.88934 0.87833 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.13 10.96 21.83 0.24 -44.89 16 2 C 0.03 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 39.64 29.60 68.60 2.03 41.67 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.50 -28.51 9.05 23.46 0.21 -28.29 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.50 5.58 -21.29 -0.12 4.38 16 10 C -0.25 -12.64 9.80 22.73 0.22 -12.42 16 11 C -0.08 -3.75 7.84 22.22 0.17 -3.58 16 12 C -0.19 -8.25 4.92 -19.68 -0.10 -8.35 16 13 C 0.13 4.15 5.11 85.56 0.44 4.59 16 14 N -0.53 -16.62 4.53 -900.72 -4.08 -20.69 16 15 C 0.06 1.94 5.15 86.33 0.44 2.38 16 16 C -0.09 -2.87 5.10 30.65 0.16 -2.71 16 17 C -0.08 -1.87 2.33 -10.72 -0.02 -1.90 16 18 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 19 C 0.09 1.83 6.18 71.98 0.45 2.28 16 20 O -0.59 -12.43 13.26 -148.98 -1.98 -14.40 16 21 C 0.12 2.41 3.27 30.64 0.10 2.51 16 22 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 23 O -0.57 -13.21 11.98 -148.98 -1.79 -14.99 16 24 C 0.02 0.47 5.13 86.31 0.44 0.91 16 25 C -0.08 -4.00 9.67 22.22 0.21 -3.79 16 26 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 27 H 0.29 14.11 8.30 -92.71 -0.77 13.35 16 28 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.11 4.21 7.94 -2.91 -0.02 4.19 16 30 H 0.03 1.03 8.06 -2.39 -0.02 1.02 16 31 H 0.08 2.40 7.92 -2.39 -0.02 2.38 16 32 H 0.06 2.19 5.74 -2.39 -0.01 2.18 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.76 7.80 -2.39 -0.02 1.74 16 35 H 0.06 1.88 7.90 -2.38 -0.02 1.86 16 36 H 0.04 0.99 7.79 -2.38 -0.02 0.97 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.40 4.48 9.12 -74.06 -0.68 3.80 16 39 H 0.39 6.24 9.08 -74.06 -0.67 5.57 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 1.72 8.02 -2.39 -0.02 1.70 16 42 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -68.04 343.16 -2.66 -70.69 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.33 Total: 34.61 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 3.25 Total: -51.99 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -3.84 Total: -65.58 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -3.76 Total: -29.40 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -68.04 -2.66 -70.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576618543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.835 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds