Wall clock time and date at job start Tue Mar 31 2020 07:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47177 * 239.99998 * 3 2 1 5 5 H 1.48499 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47052 * 120.00311 * 3 2 1 7 7 C 1.39945 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 197.85391 * 7 2 1 9 9 C 1.41399 * 120.00091 * 17.85681 * 7 2 1 10 10 C 1.40715 * 120.24527 * 24.38490 * 9 7 2 11 11 C 1.37613 * 119.74983 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24494 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.75140 * 180.02562 * 12 11 10 14 14 N 1.46893 * 109.47149 * 90.00073 * 13 12 11 15 15 C 1.46830 * 110.98488 * 294.21172 * 14 13 12 16 16 C 1.53037 * 109.51652 * 174.15588 * 15 14 13 17 17 C 1.53120 * 109.27768 * 59.18472 * 16 15 14 18 18 H 1.09001 * 109.52296 * 62.25160 * 17 16 15 19 19 C 1.53000 * 109.51992 * 182.43646 * 17 16 15 20 20 O 1.42894 * 109.47801 * 294.68211 * 19 17 16 21 21 C 1.53116 * 109.16006 * 302.33982 * 17 16 15 22 22 H 1.08992 * 109.50457 * 297.72109 * 21 17 16 23 23 O 1.42903 * 109.50461 * 177.59504 * 21 17 16 24 24 C 1.46854 * 111.00131 * 170.00458 * 14 13 12 25 25 C 1.38639 * 120.50190 * 0.29515 * 12 11 10 26 26 C 1.37620 * 120.24644 * 359.45315 * 25 12 11 27 27 H 0.96998 * 119.99389 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.12507 * 0.02562 * 10 9 7 29 29 H 1.07990 * 119.88242 * 180.02562 * 11 10 9 30 30 H 1.09007 * 109.46688 * 329.99934 * 13 12 11 31 31 H 1.09003 * 109.47516 * 210.00326 * 13 12 11 32 32 H 1.09006 * 109.46276 * 54.14542 * 15 14 13 33 33 H 1.08996 * 109.45936 * 294.16598 * 15 14 13 34 34 H 1.09000 * 109.50368 * 299.23991 * 16 15 14 35 35 H 1.09005 * 109.50336 * 179.12629 * 16 15 14 36 36 H 1.09005 * 109.47132 * 54.68503 * 19 17 16 37 37 H 1.09007 * 109.46636 * 174.67805 * 19 17 16 38 38 H 0.96693 * 114.00495 * 180.02562 * 20 19 17 39 39 H 0.96697 * 114.00017 * 180.19802 * 23 21 17 40 40 H 1.08998 * 109.46464 * 65.81852 * 24 14 13 41 41 H 1.08997 * 109.45760 * 305.84189 * 24 14 13 42 42 H 1.07997 * 119.87389 * 179.70265 * 25 12 11 43 43 H 1.08001 * 120.12958 * 180.27440 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4069 -0.3766 10 6 0.2208 -2.3617 -1.2122 11 6 -0.4099 -3.5308 -1.5714 12 6 0.0655 -4.7499 -1.1135 13 6 -0.6335 -6.0234 -1.5143 14 7 -0.0424 -6.5361 -2.7575 15 6 -0.2995 -5.6226 -3.8778 16 6 0.4505 -6.1117 -5.1189 17 6 -0.0212 -7.5255 -5.4701 18 1 -1.0839 -7.5054 -5.7118 19 6 0.7685 -8.0436 -6.6738 20 8 0.4587 -7.2529 -7.8230 21 6 0.2133 -8.4463 -4.2695 22 1 1.2802 -8.4966 -4.0524 23 8 -0.2757 -9.7551 -4.5693 24 6 -0.5298 -7.8895 -3.0530 25 6 1.1759 -4.8060 -0.2853 26 6 1.8255 -3.6499 0.0825 27 1 -0.4849 0.8401 0.0004 28 1 -0.1510 -1.4130 -1.5704 29 1 -1.2780 -3.4986 -2.2130 30 1 -1.6931 -5.8221 -1.6718 31 1 -0.5181 -6.7654 -0.7241 32 1 0.0443 -4.6217 -3.6166 33 1 -1.3690 -5.5962 -4.0867 34 1 1.5212 -6.1253 -4.9152 35 1 0.2470 -5.4420 -5.9545 36 1 1.8361 -7.9769 -6.4640 37 1 0.4999 -9.0827 -6.8645 38 1 0.9244 -7.5256 -8.6253 39 1 -0.1624 -10.3916 -3.8502 40 1 -1.5982 -7.8523 -3.2658 41 1 -0.3531 -8.5350 -2.1927 42 1 1.5348 -5.7609 0.0694 43 1 2.6930 -3.6961 0.7242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576618545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:36 Heat of formation + Delta-G solvation = -89.550656 kcal Electronic energy + Delta-G solvation = -23259.732158 eV Core-core repulsion = 19882.692990 eV Total energy + Delta-G solvation = -3377.039168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.62467 -37.75572 -36.70846 -36.10035 -33.93587 -32.94072 -30.38796 -29.64124 -29.19728 -27.58500 -25.51240 -23.44375 -22.91619 -21.57236 -20.85683 -19.81983 -19.70504 -17.47349 -17.31610 -17.28364 -15.63977 -15.37954 -15.14788 -15.10033 -14.54674 -14.23227 -13.99152 -13.68423 -13.43941 -13.25825 -12.98315 -12.55201 -12.33760 -12.15132 -11.92284 -11.88399 -11.60723 -11.29520 -11.08569 -10.99207 -10.74383 -10.63123 -10.52973 -10.42786 -10.28044 -10.05967 -9.90753 -9.53037 -9.36400 -9.11104 -8.00227 -7.41619 -7.28330 -6.75878 -4.34050 2.74594 3.06345 3.08538 3.10094 3.18833 3.90330 3.93383 4.08679 4.35813 4.69749 4.73866 4.88717 5.04743 5.21993 5.31152 5.36999 5.47289 5.49160 5.68146 5.73155 5.79191 5.83057 5.89987 5.99440 6.00670 6.21230 6.24954 6.37546 6.40767 6.42450 6.45640 6.95308 7.08222 7.25059 7.34489 7.38614 7.42842 7.51273 7.56178 7.62974 7.89784 8.06414 8.15098 8.31550 8.64919 8.90671 8.99026 10.18620 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.003376 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.234811 B = 8292.001203 C = 8936.465476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.166 4.166 11 C -0.094 4.094 12 C -0.209 4.209 13 C 0.121 3.879 14 N -0.528 5.528 15 C 0.051 3.949 16 C -0.105 4.105 17 C -0.078 4.078 18 H 0.078 0.922 19 C 0.084 3.916 20 O -0.573 6.573 21 C 0.114 3.886 22 H 0.066 0.934 23 O -0.570 6.570 24 C 0.026 3.974 25 C -0.069 4.069 26 C -0.229 4.229 27 H 0.281 0.719 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.376 0.624 39 H 0.377 0.623 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -13.099 -8.951 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.185 4.185 11 C -0.113 4.113 12 C -0.210 4.210 13 C -0.005 4.005 14 N -0.253 5.253 15 C -0.077 4.077 16 C -0.143 4.143 17 C -0.097 4.097 18 H 0.096 0.904 19 C 0.007 3.993 20 O -0.378 6.378 21 C 0.055 3.945 22 H 0.084 0.916 23 O -0.374 6.374 24 C -0.103 4.103 25 C -0.087 4.087 26 C -0.248 4.248 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.223 0.777 39 H 0.225 0.775 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.429 -12.385 -8.999 15.315 hybrid contribution -0.073 0.247 0.191 0.321 sum -0.502 -12.137 -8.808 15.005 Atomic orbital electron populations 1.69822 1.07582 1.29265 1.35193 1.25904 0.94703 1.01269 0.92226 0.86389 0.80177 0.80295 0.79986 1.18808 1.20365 1.19032 1.19575 0.98130 0.91367 1.40268 0.90531 1.17609 0.91025 0.91986 0.88307 1.21277 0.99383 0.96642 1.01197 1.20513 0.98397 0.92866 0.99523 1.18806 1.01745 0.92178 1.08315 1.20720 0.94574 0.95367 0.89810 1.62030 1.59148 1.00590 1.03574 1.22198 0.97277 0.98273 0.89918 1.21577 1.00971 0.94354 0.97363 1.21159 1.01134 0.95041 0.92344 0.90380 1.22165 0.97750 0.93822 0.85607 1.86477 1.71494 1.59733 1.20130 1.21751 0.97342 0.81872 0.93527 0.91568 1.86495 1.85711 1.20704 1.44532 1.22725 0.97419 0.92451 0.97688 1.20302 0.94909 0.96208 0.97315 1.20956 1.03750 0.92974 1.07168 0.90859 0.86571 0.89915 0.95766 0.91762 0.88689 0.95603 0.91046 0.90423 0.93787 0.93044 0.77738 0.77541 0.94675 0.90829 0.89585 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.49 10.95 55.55 0.61 -19.89 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.32 9.05 -37.74 -0.34 -12.67 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 10 C -0.17 -4.27 8.70 -38.87 -0.34 -4.60 16 11 C -0.09 -2.15 7.83 -39.66 -0.31 -2.46 16 12 C -0.21 -4.45 4.91 -104.33 -0.51 -4.96 16 13 C 0.12 2.13 5.11 -4.98 -0.03 2.10 16 14 N -0.53 -8.39 4.65 -236.12 -1.10 -9.48 16 15 C 0.05 0.81 5.15 -3.84 -0.02 0.79 16 16 C -0.10 -1.47 5.25 -26.65 -0.14 -1.61 16 17 C -0.08 -1.00 2.22 -90.50 -0.20 -1.20 16 18 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.08 0.94 6.37 37.16 0.24 1.17 16 20 O -0.57 -6.42 13.26 -35.23 -0.47 -6.89 16 21 C 0.11 1.35 3.04 -26.65 -0.08 1.27 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 O -0.57 -6.00 12.68 -35.23 -0.45 -6.44 16 24 C 0.03 0.34 5.08 -3.83 -0.02 0.32 16 25 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 26 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.12 3.11 6.16 -52.48 -0.32 2.78 16 29 H 0.08 1.74 7.94 -52.49 -0.42 1.33 16 30 H 0.02 0.42 8.06 -51.92 -0.42 0.00 16 31 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.09 1.74 5.74 -51.93 -0.30 1.45 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.55 7.62 -51.93 -0.40 0.16 16 38 H 0.38 2.39 9.12 45.56 0.42 2.81 16 39 H 0.38 2.40 9.08 45.56 0.41 2.82 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 42 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -29.32 344.08 -9.64 -38.96 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.19 Total: 10.42 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -3.20 Total: -25.50 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: -0.49 Total: -29.37 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.91 Total: -13.33 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.32 -9.64 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576618545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.593 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds