Wall clock time and date at job start Tue Mar 31 2020 07:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48500 * 109.47177 * 239.99998 * 3 2 1 5 5 H 1.48499 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47052 * 120.00311 * 3 2 1 7 7 C 1.39945 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 197.85391 * 7 2 1 9 9 C 1.41399 * 120.00091 * 17.85681 * 7 2 1 10 10 C 1.40715 * 120.24527 * 24.38490 * 9 7 2 11 11 C 1.37613 * 119.74983 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24494 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.75140 * 180.02562 * 12 11 10 14 14 N 1.46893 * 109.47149 * 90.00073 * 13 12 11 15 15 C 1.46830 * 110.98488 * 294.21172 * 14 13 12 16 16 C 1.53037 * 109.51652 * 174.15588 * 15 14 13 17 17 C 1.53120 * 109.27768 * 59.18472 * 16 15 14 18 18 H 1.09001 * 109.52296 * 62.25160 * 17 16 15 19 19 C 1.53000 * 109.51992 * 182.43646 * 17 16 15 20 20 O 1.42894 * 109.47801 * 294.68211 * 19 17 16 21 21 C 1.53116 * 109.16006 * 302.33982 * 17 16 15 22 22 H 1.08992 * 109.50457 * 297.72109 * 21 17 16 23 23 O 1.42903 * 109.50461 * 177.59504 * 21 17 16 24 24 C 1.46854 * 111.00131 * 170.00458 * 14 13 12 25 25 C 1.38639 * 120.50190 * 0.29515 * 12 11 10 26 26 C 1.37620 * 120.24644 * 359.45315 * 25 12 11 27 27 H 0.96998 * 119.99389 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.12507 * 0.02562 * 10 9 7 29 29 H 1.07990 * 119.88242 * 180.02562 * 11 10 9 30 30 H 1.09007 * 109.46688 * 329.99934 * 13 12 11 31 31 H 1.09003 * 109.47516 * 210.00326 * 13 12 11 32 32 H 1.09006 * 109.46276 * 54.14542 * 15 14 13 33 33 H 1.08996 * 109.45936 * 294.16598 * 15 14 13 34 34 H 1.09000 * 109.50368 * 299.23991 * 16 15 14 35 35 H 1.09005 * 109.50336 * 179.12629 * 16 15 14 36 36 H 1.09005 * 109.47132 * 54.68503 * 19 17 16 37 37 H 1.09007 * 109.46636 * 174.67805 * 19 17 16 38 38 H 0.96693 * 114.00495 * 180.02562 * 20 19 17 39 39 H 0.96697 * 114.00017 * 180.19802 * 23 21 17 40 40 H 1.08998 * 109.46464 * 65.81852 * 24 14 13 41 41 H 1.08997 * 109.45760 * 305.84189 * 24 14 13 42 42 H 1.07997 * 119.87389 * 179.70265 * 25 12 11 43 43 H 1.08001 * 120.12958 * 180.27440 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4069 -0.3766 10 6 0.2208 -2.3617 -1.2122 11 6 -0.4099 -3.5308 -1.5714 12 6 0.0655 -4.7499 -1.1135 13 6 -0.6335 -6.0234 -1.5143 14 7 -0.0424 -6.5361 -2.7575 15 6 -0.2995 -5.6226 -3.8778 16 6 0.4505 -6.1117 -5.1189 17 6 -0.0212 -7.5255 -5.4701 18 1 -1.0839 -7.5054 -5.7118 19 6 0.7685 -8.0436 -6.6738 20 8 0.4587 -7.2529 -7.8230 21 6 0.2133 -8.4463 -4.2695 22 1 1.2802 -8.4966 -4.0524 23 8 -0.2757 -9.7551 -4.5693 24 6 -0.5298 -7.8895 -3.0530 25 6 1.1759 -4.8060 -0.2853 26 6 1.8255 -3.6499 0.0825 27 1 -0.4849 0.8401 0.0004 28 1 -0.1510 -1.4130 -1.5704 29 1 -1.2780 -3.4986 -2.2130 30 1 -1.6931 -5.8221 -1.6718 31 1 -0.5181 -6.7654 -0.7241 32 1 0.0443 -4.6217 -3.6166 33 1 -1.3690 -5.5962 -4.0867 34 1 1.5212 -6.1253 -4.9152 35 1 0.2470 -5.4420 -5.9545 36 1 1.8361 -7.9769 -6.4640 37 1 0.4999 -9.0827 -6.8645 38 1 0.9244 -7.5256 -8.6253 39 1 -0.1624 -10.3916 -3.8502 40 1 -1.5982 -7.8523 -3.2658 41 1 -0.3531 -8.5350 -2.1927 42 1 1.5348 -5.7609 0.0694 43 1 2.6930 -3.6961 0.7242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576618545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:34 Heat of formation + Delta-G solvation = -111.449163 kcal Electronic energy + Delta-G solvation = -23260.681749 eV Core-core repulsion = 19882.692990 eV Total energy + Delta-G solvation = -3377.988759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.74903 -39.39857 -37.68594 -37.17921 -35.62030 -34.21766 -32.02578 -31.19115 -30.62603 -29.03439 -26.95809 -24.90786 -24.02777 -22.97634 -22.49965 -21.47768 -20.83021 -19.19910 -18.32359 -18.20298 -17.16777 -16.75412 -16.48895 -16.21777 -15.82606 -15.52257 -15.41460 -15.27202 -14.81123 -14.48391 -14.22661 -13.95217 -13.80002 -13.42667 -13.40117 -13.27458 -13.00157 -12.81956 -12.72134 -12.49380 -12.33826 -12.05396 -11.87708 -11.68122 -11.42331 -11.31028 -11.23739 -10.98118 -10.92054 -10.75465 -9.38675 -9.24539 -9.11268 -8.62618 -6.31438 0.96119 1.18733 1.37662 1.48541 1.53380 2.20987 2.65058 2.97676 3.24962 3.39103 3.72067 3.80932 3.91344 4.10501 4.15755 4.28716 4.32530 4.36309 4.41682 4.47878 4.49514 4.60808 4.66864 4.78287 4.81970 4.83888 4.88321 4.94947 5.06524 5.08151 5.17362 5.19411 5.33953 5.39802 5.50119 5.73294 5.97380 6.07510 6.12422 6.21737 6.32178 6.42288 6.72820 6.88109 6.92630 6.96583 7.06846 8.34135 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.003376 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.234811 B = 8292.001203 C = 8936.465476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.190 4.190 11 C -0.095 4.095 12 C -0.195 4.195 13 C 0.126 3.874 14 N -0.533 5.533 15 C 0.053 3.947 16 C -0.096 4.096 17 C -0.079 4.079 18 H 0.063 0.937 19 C 0.089 3.911 20 O -0.593 6.593 21 C 0.125 3.875 22 H 0.071 0.929 23 O -0.574 6.574 24 C 0.027 3.973 25 C -0.070 4.070 26 C -0.244 4.244 27 H 0.287 0.713 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.396 0.604 39 H 0.397 0.603 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -15.044 -9.423 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.210 4.210 11 C -0.114 4.114 12 C -0.196 4.196 13 C -0.001 4.001 14 N -0.259 5.259 15 C -0.075 4.075 16 C -0.134 4.134 17 C -0.098 4.098 18 H 0.081 0.919 19 C 0.011 3.989 20 O -0.401 6.401 21 C 0.066 3.934 22 H 0.089 0.911 23 O -0.382 6.382 24 C -0.101 4.101 25 C -0.088 4.088 26 C -0.264 4.264 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.248 0.752 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.143 -14.372 -9.478 17.216 hybrid contribution -0.234 0.664 0.281 0.757 sum -0.377 -13.708 -9.198 16.512 Atomic orbital electron populations 1.69880 1.08994 1.30476 1.35919 1.26736 0.95464 1.04445 0.91224 0.85286 0.78823 0.75759 0.80041 1.18588 1.19193 1.18318 1.19823 0.98349 0.92728 1.42506 0.90823 1.17940 0.91887 0.93074 0.89254 1.21224 1.00342 0.96923 1.02495 1.20701 0.98535 0.92805 0.99311 1.19233 1.00802 0.93352 1.06228 1.20661 0.94160 0.93940 0.91320 1.61927 1.59319 1.01873 1.02753 1.22113 0.97340 0.97111 0.90905 1.21458 1.00379 0.95411 0.96161 1.21134 1.00418 0.94439 0.93810 0.91883 1.22090 0.97912 0.93844 0.85011 1.86429 1.72260 1.60216 1.21204 1.21532 0.97338 0.82317 0.92259 0.91093 1.86467 1.85617 1.20365 1.45741 1.22823 0.97273 0.90764 0.99237 1.20627 0.94685 0.96675 0.96860 1.21168 1.04351 0.93292 1.07588 0.90246 0.88549 0.88601 0.95505 0.89616 0.91620 0.95735 0.91387 0.90902 0.92798 0.92408 0.75388 0.75229 0.95042 0.88648 0.86567 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.20 10.95 21.83 0.24 -43.96 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 38.98 29.60 68.60 2.03 41.01 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.50 -27.90 9.05 23.46 0.21 -27.68 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 10 C -0.19 -10.21 8.70 22.73 0.20 -10.01 16 11 C -0.09 -4.40 7.83 22.22 0.17 -4.22 16 12 C -0.19 -8.11 4.91 -19.67 -0.10 -8.20 16 13 C 0.13 4.10 5.11 85.56 0.44 4.54 16 14 N -0.53 -15.76 4.65 -900.96 -4.19 -19.95 16 15 C 0.05 1.66 5.15 86.33 0.44 2.11 16 16 C -0.10 -2.60 5.25 30.65 0.16 -2.44 16 17 C -0.08 -1.87 2.22 -10.71 -0.02 -1.90 16 18 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 19 C 0.09 1.78 6.37 71.98 0.46 2.24 16 20 O -0.59 -12.23 13.26 -148.98 -1.98 -14.20 16 21 C 0.12 2.58 3.04 30.65 0.09 2.67 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 O -0.57 -10.11 12.68 -148.98 -1.89 -12.00 16 24 C 0.03 0.62 5.08 86.33 0.44 1.06 16 25 C -0.07 -3.03 9.67 22.22 0.21 -2.82 16 26 C -0.24 -12.16 9.80 22.73 0.22 -11.94 16 27 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 28 H 0.10 5.46 6.16 -2.91 -0.02 5.44 16 29 H 0.10 4.10 7.94 -2.92 -0.02 4.07 16 30 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16 31 H 0.09 2.47 7.93 -2.39 -0.02 2.45 16 32 H 0.07 2.43 5.74 -2.38 -0.01 2.42 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.02 7.91 -2.38 -0.02 2.00 16 36 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.06 1.09 7.62 -2.38 -0.02 1.07 16 38 H 0.40 4.24 9.12 -74.06 -0.68 3.57 16 39 H 0.40 3.49 9.08 -74.06 -0.67 2.82 16 40 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 1.78 8.02 -2.39 -0.02 1.76 16 42 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -64.66 344.08 -2.86 -67.52 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.33 Total: 31.55 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 3.25 Total: -49.98 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -3.95 Total: -63.90 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -3.86 Total: -26.20 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -64.66 -2.86 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576618545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.925 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds