Wall clock time and date at job start Tue Mar 31 2020 07:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48496 * 109.47233 * 240.00405 * 3 2 1 5 5 H 1.48499 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46639 * 120.00411 * 3 2 1 7 7 C 1.39891 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 197.92983 * 7 2 1 9 9 C 1.41216 * 120.00121 * 17.92890 * 7 2 1 10 10 C 1.40835 * 120.17639 * 24.54906 * 9 7 2 11 11 C 1.36444 * 119.80814 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18367 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81171 * 179.97438 * 12 11 10 14 14 C 1.42904 * 116.99681 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47242 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.46921 * 54.99605 * 15 14 13 17 17 O 1.42902 * 109.46796 * 294.99555 * 15 14 13 18 18 C 1.52995 * 109.47105 * 174.99874 * 15 14 13 19 19 N 1.46900 * 109.46963 * 185.00083 * 18 15 14 20 20 C 1.46904 * 111.00027 * 180.02562 * 19 18 15 21 21 C 1.52998 * 109.47172 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.49778 * 243.74279 * 21 20 19 23 23 C 1.52996 * 117.49909 * 175.07940 * 21 20 19 24 24 C 1.39309 * 120.36512 * 0.25276 * 12 11 10 25 25 C 1.36441 * 120.18726 * 359.49147 * 24 12 11 26 26 H 0.97002 * 120.00329 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.09689 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.90474 * 179.97438 * 11 10 9 29 29 H 1.08994 * 109.47399 * 59.99004 * 14 13 12 30 30 H 1.09008 * 109.46572 * 299.99799 * 14 13 12 31 31 H 0.96696 * 114.00288 * 300.00259 * 17 15 14 32 32 H 1.09003 * 109.47326 * 304.99435 * 18 15 14 33 33 H 1.08994 * 109.47665 * 64.99574 * 18 15 14 34 34 H 1.00895 * 110.99936 * 303.94988 * 19 18 15 35 35 H 1.09003 * 109.46809 * 299.99468 * 20 19 18 36 36 H 1.08995 * 109.47511 * 59.99164 * 20 19 18 37 37 H 1.09000 * 115.54836 * 29.41199 * 21 20 19 38 38 H 1.08998 * 117.50002 * 359.97438 * 22 21 20 39 39 H 1.08997 * 117.49848 * 145.01988 * 22 21 20 40 40 H 1.09001 * 117.50203 * 214.97867 * 23 21 20 41 41 H 1.08998 * 117.50205 * 0.02562 * 23 21 20 42 42 H 1.08006 * 119.90518 * 179.72117 * 24 12 11 43 43 H 1.07998 * 120.09739 * 180.25258 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3536 -2.4046 -0.3775 10 6 0.2245 -2.3575 -1.2180 11 6 -0.4025 -3.5148 -1.5771 12 6 0.0716 -4.7408 -1.1153 13 8 -0.5580 -5.8869 -1.4767 14 6 -0.0214 -7.1099 -0.9682 15 6 -0.8574 -8.2851 -1.4789 16 1 -0.9055 -8.2508 -2.5674 17 8 -2.1784 -8.1992 -0.9407 18 6 -0.2116 -9.6001 -1.0381 19 7 -0.9454 -10.7278 -1.6277 20 6 -0.3525 -12.0101 -1.2248 21 6 -1.1424 -13.1581 -1.8564 22 6 -1.8714 -14.1170 -0.9131 23 6 -0.6116 -14.5781 -1.6504 24 6 1.1850 -4.7957 -0.2798 25 6 1.8267 -3.6480 0.0845 26 1 -0.4851 0.8400 0.0004 27 1 -0.1445 -1.4079 -1.5765 28 1 -1.2687 -3.4805 -2.2212 29 1 -0.0468 -7.0926 0.1213 30 1 1.0090 -7.2226 -1.3058 31 1 -2.2119 -8.2237 0.0254 32 1 0.8252 -9.6261 -1.3736 33 1 -0.2436 -9.6742 0.0489 34 1 -1.9237 -10.6897 -1.3839 35 1 0.6834 -12.0530 -1.5612 36 1 -0.3859 -12.1007 -0.1391 37 1 -1.6182 -12.9321 -2.8107 38 1 -1.7879 -13.9303 0.1575 39 1 -2.8266 -14.5223 -1.2470 40 1 -0.7385 -15.2867 -2.4690 41 1 0.3001 -14.6946 -1.0645 42 1 1.5436 -5.7498 0.0775 43 1 2.6922 -3.6926 0.7290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577621853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:08 Heat of formation + Delta-G solvation = -51.217533 kcal Electronic energy + Delta-G solvation = -21870.178630 eV Core-core repulsion = 18494.801711 eV Total energy + Delta-G solvation = -3375.376920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.16073 -38.34781 -37.48231 -36.12098 -34.70473 -33.31516 -30.74464 -29.61997 -28.98738 -26.98673 -24.83818 -23.79934 -22.73797 -21.99951 -20.92659 -20.59059 -20.53791 -17.35900 -17.26677 -16.70889 -16.47529 -16.18375 -15.25641 -15.08942 -14.80357 -14.78243 -14.02138 -13.92607 -13.88621 -13.38065 -13.05228 -12.79270 -12.35018 -12.24595 -12.13528 -11.90070 -11.77847 -11.60802 -11.38368 -11.12525 -10.99826 -10.82816 -10.72739 -10.58714 -10.36269 -10.01835 -9.96052 -9.82460 -9.33053 -9.01456 -8.73678 -7.64055 -7.02863 -6.71935 -4.25245 2.79326 2.95325 3.08152 3.10480 3.22669 3.34736 3.57125 3.95254 4.15319 4.39750 4.44782 4.55372 4.62143 4.70092 4.94677 4.98861 4.99475 5.13329 5.22508 5.26790 5.35143 5.42704 5.46757 5.52226 5.61714 5.67741 5.73199 5.88993 6.05713 6.06394 6.23483 6.67927 6.73957 6.97941 7.11140 7.11684 7.18842 7.46434 7.55761 7.62331 7.79387 8.00641 8.20815 8.45636 8.65575 8.90096 8.99072 10.22496 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.058730 B = 0.002137 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.645888 B =13098.533121 C =13378.962197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.112 3.888 16 H 0.115 0.885 17 O -0.551 6.551 18 C 0.032 3.968 19 N -0.682 5.682 20 C 0.089 3.911 21 C -0.151 4.151 22 C -0.185 4.185 23 C -0.177 4.177 24 C -0.168 4.168 25 C -0.199 4.199 26 H 0.281 0.719 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.370 0.630 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.350 0.650 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -20.345 -0.661 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.038 4.038 15 C 0.052 3.948 16 H 0.133 0.867 17 O -0.355 6.355 18 C -0.098 4.098 19 N -0.314 5.314 20 C -0.040 4.040 21 C -0.170 4.170 22 C -0.222 4.222 23 C -0.215 4.215 24 C -0.187 4.187 25 C -0.219 4.219 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.216 0.784 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.731 -20.130 -1.989 20.302 hybrid contribution 0.552 0.581 1.837 2.005 sum -1.179 -19.549 -0.151 19.585 Atomic orbital electron populations 1.69824 1.07501 1.29256 1.35873 1.25879 0.94723 1.01216 0.92386 0.86379 0.80123 0.80367 0.79889 1.18881 1.20382 1.19127 1.19423 0.98064 0.91262 1.40653 0.90604 1.17597 0.91878 0.92103 0.89878 1.20987 0.98489 0.96321 0.99491 1.19851 1.00786 0.90218 1.02912 1.18623 0.96933 0.84858 1.04820 1.85889 1.54604 1.12036 1.70740 1.23085 0.97433 0.85157 0.98129 1.21966 0.82199 0.90115 1.00497 0.86697 1.86647 1.27163 1.96448 1.25252 1.22540 0.99246 0.91094 0.96930 1.60333 1.07466 1.00865 1.62780 1.21526 0.98373 0.87644 0.96474 1.22334 1.03152 0.90315 1.01169 1.23086 0.96559 1.04377 0.98139 1.22946 0.98024 0.97161 1.03370 1.20391 0.98024 0.97714 1.02587 1.20550 1.03124 0.92536 1.05662 0.90847 0.85645 0.88404 0.93083 0.92332 0.78387 0.89748 0.94696 0.83106 0.90623 0.95192 0.86810 0.88969 0.88771 0.88663 0.88841 0.88988 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.79 10.96 55.54 0.61 -20.18 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 8 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.09 2.36 5.57 -106.80 -0.60 1.77 16 10 C -0.13 -3.53 8.64 -39.25 -0.34 -3.86 16 11 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 O -0.32 -6.57 10.09 -23.57 -0.24 -6.81 16 14 C 0.04 0.60 4.36 37.16 0.16 0.76 16 15 C 0.11 1.41 3.49 -26.73 -0.09 1.31 16 16 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 17 O -0.55 -7.25 12.82 -40.08 -0.51 -7.77 16 18 C 0.03 0.31 5.36 -3.83 -0.02 0.29 16 19 N -0.68 -6.51 6.50 -113.78 -0.74 -7.25 16 20 C 0.09 0.72 5.97 -3.82 -0.02 0.70 16 21 C -0.15 -1.14 5.94 -90.62 -0.54 -1.68 16 22 C -0.18 -1.23 10.18 -26.69 -0.27 -1.50 16 23 C -0.18 -1.15 10.25 -26.69 -0.27 -1.42 16 24 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 25 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 26 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 27 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 28 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.05 0.74 7.63 -51.93 -0.40 0.35 16 30 H 0.06 0.85 7.66 -51.92 -0.40 0.45 16 31 H 0.37 3.62 9.05 45.56 0.41 4.04 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 3.34 8.29 -39.29 -0.33 3.02 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 43 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -29.32 358.99 -10.29 -39.60 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.96 Total: 11.08 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.82 Total: -27.81 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: -0.13 Total: -27.43 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.75 Total: -14.58 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.32 -10.29 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577621853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.614 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds