Wall clock time and date at job start Tue Mar 31 2020 07:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48496 * 109.47233 * 240.00405 * 3 2 1 5 5 H 1.48499 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46639 * 120.00411 * 3 2 1 7 7 C 1.39891 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99944 * 197.92983 * 7 2 1 9 9 C 1.41216 * 120.00121 * 17.92890 * 7 2 1 10 10 C 1.40835 * 120.17639 * 24.54906 * 9 7 2 11 11 C 1.36444 * 119.80814 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18367 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81171 * 179.97438 * 12 11 10 14 14 C 1.42904 * 116.99681 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47242 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.46921 * 54.99605 * 15 14 13 17 17 O 1.42902 * 109.46796 * 294.99555 * 15 14 13 18 18 C 1.52995 * 109.47105 * 174.99874 * 15 14 13 19 19 N 1.46900 * 109.46963 * 185.00083 * 18 15 14 20 20 C 1.46904 * 111.00027 * 180.02562 * 19 18 15 21 21 C 1.52998 * 109.47172 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.49778 * 243.74279 * 21 20 19 23 23 C 1.52996 * 117.49909 * 175.07940 * 21 20 19 24 24 C 1.39309 * 120.36512 * 0.25276 * 12 11 10 25 25 C 1.36441 * 120.18726 * 359.49147 * 24 12 11 26 26 H 0.97002 * 120.00329 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.09689 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.90474 * 179.97438 * 11 10 9 29 29 H 1.08994 * 109.47399 * 59.99004 * 14 13 12 30 30 H 1.09008 * 109.46572 * 299.99799 * 14 13 12 31 31 H 0.96696 * 114.00288 * 300.00259 * 17 15 14 32 32 H 1.09003 * 109.47326 * 304.99435 * 18 15 14 33 33 H 1.08994 * 109.47665 * 64.99574 * 18 15 14 34 34 H 1.00895 * 110.99936 * 303.94988 * 19 18 15 35 35 H 1.09003 * 109.46809 * 299.99468 * 20 19 18 36 36 H 1.08995 * 109.47511 * 59.99164 * 20 19 18 37 37 H 1.09000 * 115.54836 * 29.41199 * 21 20 19 38 38 H 1.08998 * 117.50002 * 359.97438 * 22 21 20 39 39 H 1.08997 * 117.49848 * 145.01988 * 22 21 20 40 40 H 1.09001 * 117.50203 * 214.97867 * 23 21 20 41 41 H 1.08998 * 117.50205 * 0.02562 * 23 21 20 42 42 H 1.08006 * 119.90518 * 179.72117 * 24 12 11 43 43 H 1.07998 * 120.09739 * 180.25258 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3536 -2.4046 -0.3775 10 6 0.2245 -2.3575 -1.2180 11 6 -0.4025 -3.5148 -1.5771 12 6 0.0716 -4.7408 -1.1153 13 8 -0.5580 -5.8869 -1.4767 14 6 -0.0214 -7.1099 -0.9682 15 6 -0.8574 -8.2851 -1.4789 16 1 -0.9055 -8.2508 -2.5674 17 8 -2.1784 -8.1992 -0.9407 18 6 -0.2116 -9.6001 -1.0381 19 7 -0.9454 -10.7278 -1.6277 20 6 -0.3525 -12.0101 -1.2248 21 6 -1.1424 -13.1581 -1.8564 22 6 -1.8714 -14.1170 -0.9131 23 6 -0.6116 -14.5781 -1.6504 24 6 1.1850 -4.7957 -0.2798 25 6 1.8267 -3.6480 0.0845 26 1 -0.4851 0.8400 0.0004 27 1 -0.1445 -1.4079 -1.5765 28 1 -1.2687 -3.4805 -2.2212 29 1 -0.0468 -7.0926 0.1213 30 1 1.0090 -7.2226 -1.3058 31 1 -2.2119 -8.2237 0.0254 32 1 0.8252 -9.6261 -1.3736 33 1 -0.2436 -9.6742 0.0489 34 1 -1.9237 -10.6897 -1.3839 35 1 0.6834 -12.0530 -1.5612 36 1 -0.3859 -12.1007 -0.1391 37 1 -1.6182 -12.9321 -2.8107 38 1 -1.7879 -13.9303 0.1575 39 1 -2.8266 -14.5223 -1.2470 40 1 -0.7385 -15.2867 -2.4690 41 1 0.3001 -14.6946 -1.0645 42 1 1.5436 -5.7498 0.0775 43 1 2.6922 -3.6926 0.7290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577621853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:07 Heat of formation + Delta-G solvation = -70.101404 kcal Electronic energy + Delta-G solvation = -21870.997496 eV Core-core repulsion = 18494.801711 eV Total energy + Delta-G solvation = -3376.195786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66958 -39.32056 -38.50301 -37.65988 -35.48873 -35.17876 -32.07909 -31.27965 -30.79204 -27.97570 -26.58622 -24.84932 -23.30363 -23.10059 -22.45454 -22.27117 -21.35460 -19.25597 -18.73689 -17.68605 -17.59721 -17.17769 -16.98419 -16.06836 -15.97004 -15.73232 -15.45422 -15.27587 -15.01493 -14.77243 -14.09940 -14.03924 -13.95777 -13.74487 -13.47298 -13.20133 -12.96572 -12.78508 -12.63140 -12.38456 -12.37605 -12.22317 -11.92396 -11.72189 -11.59580 -11.34704 -11.18606 -10.96232 -10.89243 -10.86515 -9.56618 -9.43813 -8.92832 -8.59550 -6.22810 0.95233 1.02355 1.39836 1.50800 1.55046 2.22754 2.37095 2.72684 2.87794 3.22810 3.45495 3.69965 3.85754 3.95262 4.00634 4.01514 4.05784 4.17051 4.28856 4.34038 4.35959 4.43329 4.46039 4.63419 4.68323 4.78752 4.83665 4.86577 5.02283 5.04313 5.08300 5.21527 5.25241 5.28195 5.31641 5.58434 5.64179 5.88131 5.99663 6.05488 6.26096 6.39089 6.56325 6.76453 6.82117 6.94864 7.10130 8.36916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.058730 B = 0.002137 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.645888 B =13098.533121 C =13378.962197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.000 4.000 13 O -0.332 6.332 14 C 0.030 3.970 15 C 0.123 3.877 16 H 0.099 0.901 17 O -0.567 6.567 18 C 0.042 3.958 19 N -0.692 5.692 20 C 0.092 3.908 21 C -0.162 4.162 22 C -0.183 4.183 23 C -0.173 4.173 24 C -0.165 4.165 25 C -0.208 4.208 26 H 0.287 0.713 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.384 0.616 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.349 0.651 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 -21.765 0.022 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.154 4.154 12 C -0.044 4.044 13 O -0.248 6.248 14 C -0.046 4.046 15 C 0.063 3.937 16 H 0.117 0.883 17 O -0.374 6.374 18 C -0.088 4.088 19 N -0.324 5.324 20 C -0.036 4.036 21 C -0.181 4.181 22 C -0.220 4.220 23 C -0.211 4.211 24 C -0.183 4.183 25 C -0.227 4.227 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.989 -21.586 -1.296 21.648 hybrid contribution 0.244 0.820 1.613 1.825 sum -0.746 -20.767 0.316 20.783 Atomic orbital electron populations 1.69886 1.08999 1.30548 1.36381 1.26756 0.95487 1.04541 0.91353 0.85246 0.78724 0.75665 0.80014 1.18571 1.19366 1.18320 1.19689 0.98389 0.92390 1.42426 0.90483 1.17967 0.92660 0.93427 0.90796 1.20905 0.99376 0.96373 1.00619 1.20018 1.01199 0.90741 1.03415 1.18691 0.96586 0.85493 1.03639 1.85881 1.54955 1.12819 1.71111 1.23486 0.98567 0.83524 0.99033 1.21835 0.81866 0.90453 0.99552 0.88335 1.86614 1.27508 1.96491 1.26784 1.22404 0.99093 0.89491 0.97778 1.60320 1.07517 1.01392 1.63181 1.21514 0.98269 0.87034 0.96821 1.22279 1.03944 0.90784 1.01074 1.23142 0.96890 1.03766 0.98194 1.23028 0.98208 0.96322 1.03492 1.20703 0.97237 0.98721 1.01663 1.20808 1.03655 0.92541 1.05737 0.90198 0.87254 0.87613 0.91718 0.91094 0.76678 0.89092 0.93144 0.83206 0.90653 0.94578 0.87810 0.88604 0.88376 0.88059 0.88216 0.85237 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.32 10.96 21.82 0.24 -44.08 16 2 C 0.03 1.66 5.13 85.24 0.44 2.10 16 3 Si 0.98 38.57 29.60 68.60 2.03 40.60 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.50 -27.16 9.04 23.40 0.21 -26.95 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 10 C -0.15 -8.36 8.64 22.49 0.19 -8.16 16 11 C -0.13 -6.76 9.92 22.11 0.22 -6.54 16 12 C 0.00 -0.01 6.71 22.79 0.15 0.14 16 13 O -0.33 -13.29 10.09 -85.26 -0.86 -14.15 16 14 C 0.03 0.85 4.36 71.98 0.31 1.16 16 15 C 0.12 2.85 3.49 30.59 0.11 2.96 16 16 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 17 O -0.57 -13.99 12.82 -144.34 -1.85 -15.84 16 18 C 0.04 0.71 5.36 86.30 0.46 1.17 16 19 N -0.69 -11.94 6.50 -513.90 -3.34 -15.29 16 20 C 0.09 1.33 5.97 86.30 0.51 1.84 16 21 C -0.16 -2.22 5.94 -10.80 -0.06 -2.28 16 22 C -0.18 -2.12 10.18 30.62 0.31 -1.81 16 23 C -0.17 -1.93 10.25 30.62 0.31 -1.61 16 24 C -0.16 -7.20 8.96 22.11 0.20 -7.00 16 25 C -0.21 -10.19 9.74 22.49 0.22 -9.97 16 26 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 27 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.06 1.67 7.63 -2.39 -0.02 1.65 16 30 H 0.07 1.85 7.66 -2.38 -0.02 1.83 16 31 H 0.38 6.72 9.05 -74.06 -0.67 6.05 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.35 6.12 8.29 -89.70 -0.74 5.38 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 0.48 7.87 -2.39 -0.02 0.46 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 1.04 8.03 -2.39 -0.02 1.02 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.13 4.59 6.27 -2.91 -0.02 4.58 16 43 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -63.52 358.99 -0.71 -64.23 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.40 Total: 36.64 kcal Atomic # 6 Polarization: -55.59 SS G_CDS: 3.47 Total: -52.11 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -3.10 Total: -59.37 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -2.71 Total: -29.99 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -63.52 -0.71 -64.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577621853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -63.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds