Wall clock time and date at job start Tue Mar 31 2020 08:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47468 * 270.00092 * 3 2 1 5 5 H 1.48508 * 109.46996 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.47018 * 149.99772 * 3 2 1 7 7 C 1.37877 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99922 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47228 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00175 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47350 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46801 * 63.46178 * 12 11 10 14 14 C 1.47907 * 110.99482 * 175.83416 * 13 12 11 15 15 C 1.53990 * 107.05333 * 214.15690 * 14 13 12 16 16 C 1.54591 * 105.14371 * 1.22389 * 15 14 13 17 17 H 1.09004 * 110.72840 * 263.42277 * 16 15 14 18 18 O 1.42900 * 110.72772 * 140.31488 * 16 15 14 19 19 C 1.35900 * 116.99822 * 84.49743 * 18 16 15 20 20 C 1.38737 * 120.05367 * 175.64886 * 19 18 16 21 21 C 1.38148 * 119.94032 * 179.74132 * 20 19 18 22 22 C 1.38261 * 120.05758 * 0.51478 * 21 20 19 23 23 C 1.38270 * 120.11043 * 359.75918 * 22 21 20 24 24 C 1.38142 * 120.05461 * 359.97438 * 23 22 21 25 25 C 1.48526 * 110.99957 * 58.43792 * 13 12 11 26 26 H 0.97004 * 119.99754 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47687 * 59.99778 * 9 7 2 28 28 H 1.09006 * 109.47121 * 299.99601 * 9 7 2 29 29 H 1.09002 * 109.46839 * 60.00386 * 11 10 9 30 30 H 1.09000 * 109.47156 * 300.00644 * 11 10 9 31 31 H 1.09002 * 109.46737 * 303.46043 * 12 11 10 32 32 H 1.09000 * 109.47192 * 183.46575 * 12 11 10 33 33 H 1.08998 * 109.91613 * 333.50787 * 14 13 12 34 34 H 1.09002 * 109.91547 * 94.80557 * 14 13 12 35 35 H 1.09004 * 110.30940 * 120.14302 * 15 14 13 36 36 H 1.09000 * 110.30981 * 242.30888 * 15 14 13 37 37 H 1.07996 * 120.02701 * 359.97438 * 20 19 18 38 38 H 1.07998 * 119.96999 * 180.27509 * 21 20 19 39 39 H 1.08001 * 119.94600 * 179.74084 * 22 21 20 40 40 H 1.08001 * 119.97314 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.02610 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.67001 * 278.14962 * 25 13 12 43 43 H 1.09000 * 110.67126 * 41.28342 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0011 12 6 2.6479 -5.9563 0.0017 13 7 3.4315 -5.8636 1.2408 14 6 4.4249 -6.9563 1.3226 15 6 4.5555 -7.3377 2.8088 16 6 3.5570 -6.4196 3.5505 17 1 4.0646 -5.5426 3.9522 18 8 2.8887 -7.1356 4.5911 19 6 3.5269 -7.2235 5.7877 20 6 2.8979 -7.8252 6.8680 21 6 3.5508 -7.9181 8.0819 22 6 4.8259 -7.4026 8.2236 23 6 5.4527 -6.7974 7.1500 24 6 4.8062 -6.7069 5.9325 25 6 2.5606 -6.0179 2.4341 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 0.9445 -4.9827 -0.8887 30 1 0.9450 -4.9822 0.8913 31 1 3.3053 -5.8123 -0.8557 32 1 2.1804 -6.9390 -0.0600 33 1 4.0799 -7.8156 0.7476 34 1 5.3867 -6.6130 0.9414 35 1 4.2882 -8.3842 2.9557 36 1 5.5710 -7.1531 3.1589 37 1 1.9001 -8.2239 6.7591 38 1 3.0633 -8.3903 8.9220 39 1 5.3331 -7.4725 9.1746 40 1 6.4489 -6.3959 7.2630 41 1 5.2961 -6.2337 5.0943 42 1 2.0703 -5.0751 2.6771 43 1 1.8244 -6.8055 2.2739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579469945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:10 Heat of formation + Delta-G solvation = -50.000218 kcal Electronic energy + Delta-G solvation = -22680.567674 eV Core-core repulsion = 19305.243542 eV Total energy + Delta-G solvation = -3375.324133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.54364 -38.86754 -37.26669 -36.25956 -32.87248 -32.04984 -31.09108 -30.14592 -28.53310 -28.11042 -26.51070 -23.55169 -22.64362 -22.30854 -22.05560 -20.83389 -20.38590 -18.45709 -16.71585 -16.41498 -16.26272 -15.98059 -15.53998 -15.02823 -14.78269 -14.65355 -14.38876 -14.15703 -13.92841 -13.66425 -13.34432 -13.13803 -12.87005 -12.61803 -12.29930 -11.87233 -11.76617 -11.66701 -11.52484 -11.18304 -11.06649 -10.82087 -10.80207 -10.66498 -10.64965 -10.41274 -9.95529 -9.19851 -9.05859 -8.77594 -8.36248 -8.30536 -8.11116 -6.07216 -4.08198 1.14356 1.26376 2.94189 3.33029 3.37832 3.43814 3.60401 4.08695 4.37546 4.41639 4.50763 4.67057 4.68625 4.83133 4.89487 4.94149 5.05398 5.18090 5.23058 5.29276 5.29336 5.40184 5.50119 5.53846 5.63262 5.66123 5.74893 5.81165 5.90667 5.95512 5.99501 6.11158 6.14927 6.22047 6.28307 6.33293 6.59105 6.90755 7.07069 7.15236 7.32214 7.46782 7.84504 8.20335 8.64259 9.06284 9.56558 11.04480 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.003137 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.015855 B = 8922.404530 C = 9878.882595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.063 3.937 12 C 0.054 3.946 13 N -0.496 5.496 14 C 0.036 3.964 15 C -0.153 4.153 16 C 0.080 3.920 17 H 0.092 0.908 18 O -0.307 6.307 19 C 0.135 3.865 20 C -0.156 4.156 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.080 4.080 24 C -0.207 4.207 25 C 0.046 3.954 26 H 0.263 0.737 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 -18.942 11.852 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.015 4.015 12 C -0.074 4.074 13 N -0.221 5.221 14 C -0.092 4.092 15 C -0.191 4.191 16 C 0.023 3.977 17 H 0.110 0.890 18 O -0.220 6.220 19 C 0.090 3.910 20 C -0.174 4.174 21 C -0.101 4.101 22 C -0.182 4.182 23 C -0.099 4.099 24 C -0.226 4.226 25 C -0.082 4.082 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.496 -18.351 11.759 23.393 hybrid contribution -0.215 0.175 -0.104 0.296 sum 8.281 -18.177 11.654 23.125 Atomic orbital electron populations 1.69967 1.06105 1.27065 1.50839 1.24951 0.94964 0.99418 0.95261 0.86345 0.79710 0.82312 0.78185 1.20518 1.21135 1.19595 1.21062 0.94097 0.89324 1.50391 0.91497 1.20186 0.88847 0.83890 0.95133 1.87957 1.34639 1.12272 1.95034 1.22277 0.93776 0.86317 0.99145 1.22361 0.95927 0.96324 0.92755 1.64771 1.13414 1.42496 1.01457 1.22849 0.98092 0.93055 0.95182 1.22982 1.00088 1.00327 0.95728 1.23392 0.93852 0.94059 0.86366 0.89011 1.86090 1.46114 1.71059 1.18701 1.19056 0.91176 0.95192 0.85600 1.20470 1.01210 1.04357 0.91403 1.20953 0.94679 0.98051 0.96418 1.21052 0.96013 1.02019 0.99102 1.20975 0.99499 0.97136 0.92248 1.21393 0.95463 1.05981 0.99764 1.23161 0.94371 1.01939 0.88740 0.92731 0.97985 0.97918 0.94077 0.94534 0.89589 0.93979 0.93569 0.89838 0.90399 0.90434 0.85299 0.85527 0.86074 0.85845 0.85128 0.88261 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.39 5.69 36.00 0.20 5.60 16 10 O -0.38 -9.26 10.25 -35.23 -0.36 -9.62 16 11 C 0.06 1.17 5.87 37.16 0.22 1.39 16 12 C 0.05 0.81 5.23 -3.82 -0.02 0.79 16 13 N -0.50 -7.46 5.28 -230.45 -1.22 -8.67 16 14 C 0.04 0.42 6.70 -2.75 -0.02 0.40 16 15 C -0.15 -1.63 6.17 -25.38 -0.16 -1.79 16 16 C 0.08 1.01 2.88 -24.87 -0.07 0.94 16 17 H 0.09 1.19 6.55 -51.93 -0.34 0.85 16 18 O -0.31 -4.02 9.89 -19.43 -0.19 -4.22 16 19 C 0.14 1.64 6.62 -39.22 -0.26 1.38 16 20 C -0.16 -1.67 9.99 -39.43 -0.39 -2.06 16 21 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 22 C -0.16 -1.45 10.04 -39.56 -0.40 -1.85 16 23 C -0.08 -0.77 10.04 -39.60 -0.40 -1.16 16 24 C -0.21 -2.27 8.78 -39.44 -0.35 -2.62 16 25 C 0.05 0.66 5.06 -1.90 -0.01 0.65 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.66 6.72 -51.93 -0.35 0.32 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.53 7.97 -51.93 -0.41 0.11 16 33 H 0.05 0.48 7.67 -51.93 -0.40 0.09 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.08 0.73 7.52 -51.93 -0.39 0.34 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.34 5.36 -52.48 -0.28 1.06 16 42 H 0.10 1.63 7.58 -51.93 -0.39 1.23 16 43 H 0.05 0.74 8.01 -51.93 -0.42 0.32 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -32.57 352.09 -9.97 -42.54 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.75 Total: -2.34 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.47 Total: -13.56 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.48 Total: -35.22 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.55 Total: -13.84 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.57 -9.97 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579469945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.463 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds