Wall clock time and date at job start Tue Mar 31 2020 08:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48493 * 109.47468 * 270.00092 * 3 2 1 5 5 H 1.48508 * 109.46996 * 30.00285 * 3 2 1 6 6 H 1.48495 * 109.47018 * 149.99772 * 3 2 1 7 7 C 1.37877 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99922 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47228 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00175 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47350 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46801 * 63.46178 * 12 11 10 14 14 C 1.47907 * 110.99482 * 175.83416 * 13 12 11 15 15 C 1.53990 * 107.05333 * 214.15690 * 14 13 12 16 16 C 1.54591 * 105.14371 * 1.22389 * 15 14 13 17 17 H 1.09004 * 110.72840 * 263.42277 * 16 15 14 18 18 O 1.42900 * 110.72772 * 140.31488 * 16 15 14 19 19 C 1.35900 * 116.99822 * 84.49743 * 18 16 15 20 20 C 1.38737 * 120.05367 * 175.64886 * 19 18 16 21 21 C 1.38148 * 119.94032 * 179.74132 * 20 19 18 22 22 C 1.38261 * 120.05758 * 0.51478 * 21 20 19 23 23 C 1.38270 * 120.11043 * 359.75918 * 22 21 20 24 24 C 1.38142 * 120.05461 * 359.97438 * 23 22 21 25 25 C 1.48526 * 110.99957 * 58.43792 * 13 12 11 26 26 H 0.97004 * 119.99754 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47687 * 59.99778 * 9 7 2 28 28 H 1.09006 * 109.47121 * 299.99601 * 9 7 2 29 29 H 1.09002 * 109.46839 * 60.00386 * 11 10 9 30 30 H 1.09000 * 109.47156 * 300.00644 * 11 10 9 31 31 H 1.09002 * 109.46737 * 303.46043 * 12 11 10 32 32 H 1.09000 * 109.47192 * 183.46575 * 12 11 10 33 33 H 1.08998 * 109.91613 * 333.50787 * 14 13 12 34 34 H 1.09002 * 109.91547 * 94.80557 * 14 13 12 35 35 H 1.09004 * 110.30940 * 120.14302 * 15 14 13 36 36 H 1.09000 * 110.30981 * 242.30888 * 15 14 13 37 37 H 1.07996 * 120.02701 * 359.97438 * 20 19 18 38 38 H 1.07998 * 119.96999 * 180.27509 * 21 20 19 39 39 H 1.08001 * 119.94600 * 179.74084 * 22 21 20 40 40 H 1.08001 * 119.97314 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.02610 * 179.97438 * 24 23 22 42 42 H 1.09003 * 110.67001 * 278.14962 * 25 13 12 43 43 H 1.09000 * 110.67126 * 41.28342 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0011 12 6 2.6479 -5.9563 0.0017 13 7 3.4315 -5.8636 1.2408 14 6 4.4249 -6.9563 1.3226 15 6 4.5555 -7.3377 2.8088 16 6 3.5570 -6.4196 3.5505 17 1 4.0646 -5.5426 3.9522 18 8 2.8887 -7.1356 4.5911 19 6 3.5269 -7.2235 5.7877 20 6 2.8979 -7.8252 6.8680 21 6 3.5508 -7.9181 8.0819 22 6 4.8259 -7.4026 8.2236 23 6 5.4527 -6.7974 7.1500 24 6 4.8062 -6.7069 5.9325 25 6 2.5606 -6.0179 2.4341 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 0.9445 -4.9827 -0.8887 30 1 0.9450 -4.9822 0.8913 31 1 3.3053 -5.8123 -0.8557 32 1 2.1804 -6.9390 -0.0600 33 1 4.0799 -7.8156 0.7476 34 1 5.3867 -6.6130 0.9414 35 1 4.2882 -8.3842 2.9557 36 1 5.5710 -7.1531 3.1589 37 1 1.9001 -8.2239 6.7591 38 1 3.0633 -8.3903 8.9220 39 1 5.3331 -7.4725 9.1746 40 1 6.4489 -6.3959 7.2630 41 1 5.2961 -6.2337 5.0943 42 1 2.0703 -5.0751 2.6771 43 1 1.8244 -6.8055 2.2739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579469945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:09 Heat of formation + Delta-G solvation = -71.092939 kcal Electronic energy + Delta-G solvation = -22681.482323 eV Core-core repulsion = 19305.243542 eV Total energy + Delta-G solvation = -3376.238782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44398 -39.88141 -38.53176 -37.69798 -34.97393 -33.33913 -31.88147 -30.98272 -29.82126 -29.50896 -28.28097 -24.63152 -24.41589 -23.43775 -23.12909 -21.78739 -21.52643 -19.33423 -18.61482 -17.77175 -17.51076 -17.09271 -16.74620 -16.42499 -16.32614 -15.74476 -15.62581 -15.34491 -15.21310 -14.66454 -14.53537 -14.28675 -14.03631 -13.91404 -13.42629 -13.35591 -13.16813 -12.88253 -12.75149 -12.59729 -12.41745 -12.31197 -12.20301 -11.97869 -11.73183 -11.67813 -11.55720 -11.26540 -10.86002 -10.20034 -9.94664 -9.39688 -9.17418 -8.32015 -6.44038 0.39648 0.48918 1.39512 1.42685 1.54904 2.01311 2.35098 2.84584 3.01659 3.02181 3.20586 3.42741 3.58337 3.83090 3.92247 4.02578 4.06959 4.19719 4.20619 4.28993 4.32948 4.40491 4.49951 4.52447 4.58638 4.64133 4.70199 4.76018 4.81194 4.84182 4.89913 4.97843 5.06571 5.09535 5.18001 5.38159 5.49058 5.55383 5.60573 5.78128 5.90324 5.95931 5.99888 6.44466 6.55973 6.84873 7.28119 8.80469 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.003137 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.015855 B = 8922.404530 C = 9878.882595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.209 3.791 10 O -0.394 6.394 11 C 0.053 3.947 12 C 0.063 3.937 13 N -0.524 5.524 14 C 0.038 3.962 15 C -0.141 4.141 16 C 0.084 3.916 17 H 0.082 0.918 18 O -0.321 6.321 19 C 0.108 3.892 20 C -0.171 4.171 21 C -0.083 4.083 22 C -0.163 4.163 23 C -0.087 4.087 24 C -0.219 4.219 25 C 0.047 3.953 26 H 0.270 0.730 27 H -0.016 1.016 28 H -0.020 1.020 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.066 0.934 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 -19.523 12.761 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.313 6.313 11 C -0.024 4.024 12 C -0.065 4.065 13 N -0.250 5.250 14 C -0.089 4.089 15 C -0.179 4.179 16 C 0.027 3.973 17 H 0.100 0.900 18 O -0.235 6.235 19 C 0.063 3.937 20 C -0.190 4.190 21 C -0.101 4.101 22 C -0.181 4.181 23 C -0.105 4.105 24 C -0.238 4.238 25 C -0.081 4.081 26 H 0.079 0.921 27 H 0.002 0.998 28 H -0.002 1.002 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.085 0.915 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.169 -18.964 12.669 24.971 hybrid contribution -0.772 0.268 -0.313 0.875 sum 9.397 -18.696 12.356 24.301 Atomic orbital electron populations 1.70075 1.07779 1.28611 1.50676 1.25978 0.95974 1.03431 0.93954 0.85178 0.78352 0.76965 0.78893 1.19143 1.19910 1.18916 1.21379 0.94057 0.90855 1.51995 0.92109 1.19788 0.88664 0.85027 0.93102 1.87907 1.34597 1.13754 1.95055 1.22628 0.95549 0.84736 0.99516 1.22294 0.95077 0.96084 0.93048 1.64688 1.14108 1.44800 1.01354 1.22908 0.97322 0.92615 0.96048 1.22915 1.00185 1.00110 0.94711 1.23246 0.93545 0.94410 0.86073 0.90012 1.86042 1.46820 1.71316 1.19321 1.19346 0.92044 0.96795 0.85542 1.20724 1.01708 1.04657 0.91867 1.21318 0.94860 0.97494 0.96444 1.21447 0.95919 1.00756 0.99973 1.21310 1.00443 0.96935 0.91843 1.21521 0.95313 1.06302 1.00657 1.23010 0.94942 1.00497 0.89615 0.92071 0.99782 1.00192 0.93154 0.94628 0.89300 0.90684 0.91791 0.89237 0.89650 0.89006 0.84948 0.82856 0.83382 0.83769 0.85083 0.91543 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.00 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.98 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -33.43 9.43 25.60 0.24 -33.19 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 9 C 0.21 12.16 5.69 71.24 0.41 12.56 16 10 O -0.39 -19.86 10.25 -148.98 -1.53 -21.39 16 11 C 0.05 2.01 5.87 71.98 0.42 2.44 16 12 C 0.06 1.83 5.23 86.30 0.45 2.28 16 13 N -0.52 -15.58 5.28 -883.01 -4.66 -20.24 16 14 C 0.04 0.83 6.70 86.44 0.58 1.41 16 15 C -0.14 -2.84 6.17 31.47 0.19 -2.64 16 16 C 0.08 2.16 2.88 31.80 0.09 2.25 16 17 H 0.08 2.21 6.55 -2.38 -0.02 2.19 16 18 O -0.32 -8.61 9.89 -92.43 -0.91 -9.52 16 19 C 0.11 2.61 6.62 22.51 0.15 2.76 16 20 C -0.17 -3.58 9.99 22.37 0.22 -3.36 16 21 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 22 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 23 C -0.09 -1.52 10.04 22.25 0.22 -1.29 16 24 C -0.22 -4.71 8.78 22.36 0.20 -4.51 16 25 C 0.05 1.40 5.06 86.65 0.44 1.84 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.35 6.72 -2.39 -0.02 1.33 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 33 H 0.06 1.17 7.67 -2.39 -0.02 1.15 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.09 1.58 7.52 -2.39 -0.02 1.56 16 37 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.13 2.67 5.36 -2.91 -0.02 2.66 16 42 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 43 H 0.06 1.68 8.01 -2.39 -0.02 1.67 16 Total: -1.00 -71.41 352.09 0.71 -70.70 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.98 Total: 12.15 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 4.53 Total: -22.12 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -4.38 Total: -77.17 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -2.44 Total: -30.91 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.41 0.71 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579469945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.397 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds