Wall clock time and date at job start Tue Mar 31 2020 08:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48504 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47231 * 300.00330 * 3 2 1 6 6 H 1.48503 * 109.47008 * 60.00594 * 3 2 1 7 7 C 1.37877 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47015 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47130 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99930 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00064 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99842 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46908 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47386 * 65.00040 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 0.97004 * 120.00532 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46834 * 60.00133 * 9 7 2 27 27 H 1.08996 * 109.47103 * 300.00448 * 9 7 2 28 28 H 1.08997 * 109.46950 * 59.99692 * 10 9 7 29 29 H 1.08996 * 109.47429 * 300.00306 * 10 9 7 30 30 H 1.08997 * 109.46965 * 60.00270 * 11 10 9 31 31 H 1.09000 * 109.47014 * 299.99982 * 11 10 9 32 32 H 1.08997 * 109.47293 * 59.99592 * 12 11 10 33 33 H 1.09008 * 109.46805 * 300.00010 * 12 11 10 34 34 H 0.97004 * 120.00117 * 359.97438 * 15 13 12 35 35 H 1.08997 * 109.46959 * 60.00151 * 16 15 13 36 36 H 1.09000 * 109.47126 * 299.99797 * 16 15 13 37 37 H 1.08999 * 109.46920 * 304.99793 * 17 16 15 38 38 H 1.08998 * 109.47220 * 185.00164 * 17 16 15 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5081 -7.4551 -0.0009 15 7 2.3948 -8.6223 -0.0029 16 6 1.6622 -9.8911 -0.0023 17 6 2.6565 -11.0540 -0.0031 18 8 3.3998 -11.0461 1.2174 19 6 4.3329 -12.0210 1.3777 20 6 5.0913 -12.0728 2.5383 21 6 6.0389 -13.0650 2.6992 22 6 6.2322 -14.0057 1.7044 23 6 5.4774 -13.9565 0.5470 24 6 4.5286 -12.9663 0.3814 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8725 -3.6047 0.8877 29 1 2.8712 -3.6040 -0.8922 30 1 0.8526 -5.0447 -0.8905 31 1 0.8545 -5.0450 0.8895 32 1 3.1018 -6.0922 0.8876 33 1 3.1004 -6.0923 -0.8923 34 1 3.3648 -8.6224 -0.0040 35 1 1.0346 -9.9486 -0.8916 36 1 1.0366 -9.9490 0.8884 37 1 3.3399 -10.9471 -0.8454 38 1 2.1144 -11.9954 -0.0922 39 1 4.9439 -11.3353 3.3135 40 1 6.6298 -13.1055 3.6023 41 1 6.9738 -14.7804 1.8319 42 1 5.6300 -14.6927 -0.2283 43 1 3.9395 -12.9280 -0.5230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:56 Heat of formation + Delta-G solvation = -77.707527 kcal Electronic energy + Delta-G solvation = -21351.385924 eV Core-core repulsion = 17974.860312 eV Total energy + Delta-G solvation = -3376.525612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60610 -39.60049 -37.90963 -35.20288 -34.67533 -32.61042 -31.57094 -30.91359 -29.92656 -28.98264 -25.71490 -24.10891 -22.86969 -22.40492 -21.68962 -20.32798 -19.92937 -18.80552 -17.01856 -16.79967 -16.52043 -16.16330 -16.03779 -15.67734 -15.35744 -14.90830 -14.42130 -14.34578 -13.90562 -13.77199 -13.55208 -13.09262 -12.95814 -12.59127 -12.25682 -12.04457 -11.98611 -11.65997 -11.56974 -11.46443 -11.23400 -10.97285 -10.50532 -10.46401 -10.37963 -9.81124 -9.58296 -9.44919 -9.20638 -9.19322 -8.94350 -8.64845 -8.28503 -5.93080 -3.95408 0.89509 1.01130 2.65269 2.76104 3.10031 3.34705 3.35973 3.41789 3.45905 4.21691 4.40291 4.49209 4.50784 4.53514 4.67169 4.75241 4.93016 4.95387 4.98193 5.13975 5.32300 5.36205 5.41686 5.43402 5.48511 5.56549 5.85848 5.90299 5.96693 6.10342 6.17813 6.25606 6.32995 6.34643 6.58521 6.87779 6.95924 7.05717 7.23324 7.42582 7.77112 7.93144 8.08662 8.26916 8.50583 9.12561 9.68134 11.18258 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.001919 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.650259 B =14584.270137 C =15221.788865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.513 3.487 14 O -0.536 6.536 15 N -0.737 5.737 16 C 0.122 3.878 17 C 0.047 3.953 18 O -0.311 6.311 19 C 0.130 3.870 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.161 4.161 23 C -0.081 4.081 24 C -0.211 4.211 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.402 0.598 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.051 -31.465 1.087 33.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.300 3.700 14 O -0.412 6.412 15 N -0.391 5.391 16 C -0.002 4.002 17 C -0.028 4.028 18 O -0.225 6.225 19 C 0.085 3.915 20 C -0.170 4.170 21 C -0.099 4.099 22 C -0.179 4.179 23 C -0.099 4.099 24 C -0.229 4.229 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.937 -31.189 1.210 33.073 hybrid contribution 0.903 0.700 -0.229 1.165 sum 11.840 -30.489 0.981 32.722 Atomic orbital electron populations 1.69986 1.06035 1.26361 1.51076 1.25048 0.94848 0.99239 0.95510 0.86554 0.80078 0.83937 0.77522 1.19791 1.21077 1.21063 1.21330 0.93027 0.91202 1.50189 0.92698 1.19108 0.94089 0.91298 0.97332 1.21650 0.99072 0.94012 1.00075 1.21451 0.97021 0.92708 1.02946 1.21791 1.00092 0.91920 1.04026 1.21113 0.88423 0.85565 0.74861 1.90708 1.14240 1.87688 1.48573 1.46043 1.10402 1.05358 1.77291 1.21346 0.93595 0.81513 1.03733 1.23133 0.94210 0.99634 0.85819 1.86141 1.48403 1.48368 1.39553 1.19041 0.89667 0.88288 0.94512 1.20517 0.98052 1.01442 0.97010 1.21012 0.96421 0.93549 0.98886 1.21095 1.01608 1.00520 0.94663 1.20968 0.94449 0.97117 0.97384 1.21283 1.03390 0.98196 1.00064 0.93126 0.96581 0.96559 0.93471 0.93485 0.91819 0.91802 0.89076 0.89160 0.76335 0.89280 0.90341 0.91098 0.90292 0.85060 0.85306 0.85918 0.85810 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 13 C 0.51 7.21 7.83 -10.99 -0.09 7.13 16 14 O -0.54 -9.82 15.98 5.56 0.09 -9.73 16 15 N -0.74 -7.46 5.50 -60.29 -0.33 -7.79 16 16 C 0.12 1.06 6.06 -4.04 -0.02 1.03 16 17 C 0.05 0.30 4.87 37.16 0.18 0.48 16 18 O -0.31 -2.72 10.08 -19.42 -0.20 -2.92 16 19 C 0.13 1.10 6.69 -39.22 -0.26 0.83 16 20 C -0.15 -1.21 9.99 -39.43 -0.39 -1.60 16 21 C -0.08 -0.53 10.04 -39.61 -0.40 -0.93 16 22 C -0.16 -1.00 10.04 -39.56 -0.40 -1.40 16 23 C -0.08 -0.51 10.04 -39.61 -0.40 -0.91 16 24 C -0.21 -1.48 9.04 -39.44 -0.36 -1.83 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.36 7.66 -51.93 -0.40 -0.04 16 38 H 0.08 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.13 0.66 6.30 -52.48 -0.33 0.33 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -35.17 364.92 -9.25 -44.42 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.93 Total: -2.27 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.10 Total: -17.27 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.40 Total: -34.80 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.11 Total: -12.65 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.17 -9.25 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.285 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds