Wall clock time and date at job start Tue Mar 31 2020 08:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48504 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47231 * 300.00330 * 3 2 1 6 6 H 1.48503 * 109.47008 * 60.00594 * 3 2 1 7 7 C 1.37877 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47015 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47130 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99930 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00064 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99842 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46908 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47386 * 65.00040 * 17 16 15 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 0.97004 * 120.00532 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46834 * 60.00133 * 9 7 2 27 27 H 1.08996 * 109.47103 * 300.00448 * 9 7 2 28 28 H 1.08997 * 109.46950 * 59.99692 * 10 9 7 29 29 H 1.08996 * 109.47429 * 300.00306 * 10 9 7 30 30 H 1.08997 * 109.46965 * 60.00270 * 11 10 9 31 31 H 1.09000 * 109.47014 * 299.99982 * 11 10 9 32 32 H 1.08997 * 109.47293 * 59.99592 * 12 11 10 33 33 H 1.09008 * 109.46805 * 300.00010 * 12 11 10 34 34 H 0.97004 * 120.00117 * 359.97438 * 15 13 12 35 35 H 1.08997 * 109.46959 * 60.00151 * 16 15 13 36 36 H 1.09000 * 109.47126 * 299.99797 * 16 15 13 37 37 H 1.08999 * 109.46920 * 304.99793 * 17 16 15 38 38 H 1.08998 * 109.47220 * 185.00164 * 17 16 15 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5081 -7.4551 -0.0009 15 7 2.3948 -8.6223 -0.0029 16 6 1.6622 -9.8911 -0.0023 17 6 2.6565 -11.0540 -0.0031 18 8 3.3998 -11.0461 1.2174 19 6 4.3329 -12.0210 1.3777 20 6 5.0913 -12.0728 2.5383 21 6 6.0389 -13.0650 2.6992 22 6 6.2322 -14.0057 1.7044 23 6 5.4774 -13.9565 0.5470 24 6 4.5286 -12.9663 0.3814 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8725 -3.6047 0.8877 29 1 2.8712 -3.6040 -0.8922 30 1 0.8526 -5.0447 -0.8905 31 1 0.8545 -5.0450 0.8895 32 1 3.1018 -6.0922 0.8876 33 1 3.1004 -6.0923 -0.8923 34 1 3.3648 -8.6224 -0.0040 35 1 1.0346 -9.9486 -0.8916 36 1 1.0366 -9.9490 0.8884 37 1 3.3399 -10.9471 -0.8454 38 1 2.1144 -11.9954 -0.0922 39 1 4.9439 -11.3353 3.3135 40 1 6.6298 -13.1055 3.6023 41 1 6.9738 -14.7804 1.8319 42 1 5.6300 -14.6927 -0.2283 43 1 3.9395 -12.9280 -0.5230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:55 Heat of formation + Delta-G solvation = -99.999445 kcal Electronic energy + Delta-G solvation = -21352.352574 eV Core-core repulsion = 17974.860312 eV Total energy + Delta-G solvation = -3377.492262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19705 -40.62465 -38.45943 -36.70390 -35.84463 -34.60539 -32.21498 -31.79383 -31.03023 -29.91316 -27.42668 -25.03471 -23.89222 -23.33163 -22.37607 -21.80874 -21.31039 -19.31647 -18.42664 -18.00687 -17.49808 -17.14056 -16.82380 -16.61104 -16.50693 -16.10152 -15.71043 -15.30489 -14.81299 -14.54818 -14.47677 -14.32600 -13.98384 -13.62595 -13.54679 -13.45980 -13.24313 -12.84340 -12.76267 -12.43841 -12.30889 -12.14747 -12.13294 -11.98397 -11.71731 -11.37588 -11.35703 -11.15201 -10.77280 -10.55523 -10.14515 -9.93040 -9.16124 -8.18576 -6.30705 0.41542 0.51078 1.40439 1.41499 1.55005 1.64631 2.10932 2.23415 2.42241 2.87152 3.14034 3.65710 3.86273 3.94529 4.02035 4.04283 4.09278 4.15718 4.26775 4.32482 4.41687 4.52547 4.59722 4.65644 4.69287 4.79369 4.81707 4.85318 4.89384 5.10979 5.20018 5.33605 5.34404 5.37198 5.43314 5.50692 5.57824 5.63490 5.78558 5.87320 5.88433 6.25676 6.44624 6.52098 6.87851 7.25505 7.38834 8.93819 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.001919 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.650259 B =14584.270137 C =15221.788865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.512 3.488 14 O -0.588 6.588 15 N -0.718 5.718 16 C 0.120 3.880 17 C 0.053 3.947 18 O -0.330 6.330 19 C 0.112 3.888 20 C -0.173 4.173 21 C -0.087 4.087 22 C -0.166 4.166 23 C -0.088 4.088 24 C -0.217 4.217 25 H 0.263 0.737 26 H -0.014 1.014 27 H -0.016 1.016 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.416 0.584 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.923 -32.619 0.532 35.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.300 3.700 14 O -0.468 6.468 15 N -0.372 5.372 16 C -0.004 4.004 17 C -0.022 4.022 18 O -0.245 6.245 19 C 0.067 3.933 20 C -0.192 4.192 21 C -0.105 4.105 22 C -0.184 4.184 23 C -0.105 4.105 24 C -0.235 4.235 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.003 0.997 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.866 -32.386 0.656 35.236 hybrid contribution -0.005 0.982 -0.042 0.983 sum 13.861 -31.404 0.614 34.333 Atomic orbital electron populations 1.70139 1.08046 1.27672 1.51932 1.26104 0.95812 1.03764 0.94813 0.85318 0.79166 0.78371 0.77684 1.18124 1.20429 1.20482 1.21790 0.93753 0.92231 1.50135 0.91591 1.19074 0.94724 0.93814 0.94369 1.21451 0.97828 0.92786 1.01301 1.21245 0.97492 0.93618 1.01058 1.21669 0.98960 0.89608 1.06605 1.21160 0.87734 0.86710 0.74416 1.90697 1.16375 1.88400 1.51359 1.45892 1.11136 1.04888 1.75239 1.21445 0.94189 0.81552 1.03217 1.23163 0.94097 0.99184 0.85746 1.86095 1.48864 1.48908 1.40619 1.19229 0.90036 0.88864 0.95213 1.20703 0.98990 1.02200 0.97276 1.21284 0.96184 0.93207 0.99804 1.21431 1.01852 1.00713 0.94450 1.21320 0.93970 0.97274 0.97981 1.21525 1.03737 0.97921 1.00323 0.92865 0.99593 0.99716 0.92205 0.91989 0.93673 0.93982 0.86698 0.86232 0.74680 0.88693 0.92090 0.89197 0.88424 0.85435 0.83611 0.83923 0.83662 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.48 13.29 21.45 0.28 -59.20 16 2 C -0.01 -0.47 5.46 84.66 0.46 0.00 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.97 4.97 29.85 0.15 1.11 16 10 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 11 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 12 C -0.13 -3.27 5.70 29.85 0.17 -3.10 16 13 C 0.51 14.03 7.83 87.66 0.69 14.72 16 14 O -0.59 -22.04 15.98 -3.03 -0.05 -22.09 16 15 N -0.72 -13.47 5.50 -463.06 -2.55 -16.02 16 16 C 0.12 1.95 6.06 86.38 0.52 2.48 16 17 C 0.05 0.57 4.87 71.98 0.35 0.92 16 18 O -0.33 -5.42 10.08 -92.40 -0.93 -6.35 16 19 C 0.11 1.76 6.69 22.51 0.15 1.91 16 20 C -0.17 -2.68 9.99 22.37 0.22 -2.45 16 21 C -0.09 -1.04 10.04 22.25 0.22 -0.82 16 22 C -0.17 -1.73 10.04 22.28 0.22 -1.51 16 23 C -0.09 -0.90 10.04 22.25 0.22 -0.68 16 24 C -0.22 -2.60 9.04 22.36 0.20 -2.40 16 25 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 26 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.80 8.10 -2.39 -0.02 1.79 16 31 H 0.04 1.70 8.10 -2.39 -0.02 1.69 16 32 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.42 5.57 8.47 -92.71 -0.79 4.78 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 0.65 7.66 -2.39 -0.02 0.63 16 38 H 0.10 0.72 7.66 -2.39 -0.02 0.70 16 39 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.14 1.11 6.30 -2.91 -0.02 1.09 16 Total: -1.00 -78.70 364.92 3.10 -75.61 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.20 Total: 9.39 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.12 Total: -28.61 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -2.26 Total: -75.21 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.98 Total: -28.45 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -78.70 3.10 -75.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.394 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds