Wall clock time and date at job start Tue Mar 31 2020 07:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00302 * 2 1 4 4 H 1.48494 * 109.47158 * 269.99856 * 3 2 1 5 5 H 1.48493 * 109.47270 * 30.00142 * 3 2 1 6 6 H 1.48506 * 109.47000 * 150.00291 * 3 2 1 7 7 C 1.37887 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47230 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46987 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00122 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99763 * 180.02562 * 13 12 11 16 16 C 1.39925 * 119.99512 * 184.62501 * 15 13 12 17 17 C 1.38870 * 120.06695 * 144.91470 * 16 15 13 18 18 C 1.38117 * 119.92504 * 180.29460 * 17 16 15 19 19 C 1.38279 * 120.06853 * 359.41825 * 18 17 16 20 20 C 1.50706 * 119.92667 * 180.32129 * 19 18 17 21 21 C 1.53002 * 109.47282 * 270.27664 * 20 19 18 22 22 O 1.42898 * 109.47140 * 180.02562 * 21 20 19 23 23 C 1.38279 * 120.14393 * 0.60397 * 19 18 17 24 24 C 1.38110 * 120.06800 * 359.67094 * 23 19 18 25 25 H 0.97000 * 119.99373 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47392 * 59.99645 * 9 7 2 27 27 H 1.09000 * 109.46822 * 299.99366 * 9 7 2 28 28 H 1.09006 * 109.47069 * 60.00026 * 10 9 7 29 29 H 1.08998 * 109.47439 * 300.00077 * 10 9 7 30 30 H 1.09006 * 109.46735 * 60.00236 * 11 10 9 31 31 H 1.08992 * 109.47144 * 300.00148 * 11 10 9 32 32 H 1.08998 * 109.47179 * 60.00131 * 12 11 10 33 33 H 1.09006 * 109.47248 * 300.00246 * 12 11 10 34 34 H 0.97003 * 120.00217 * 4.61241 * 15 13 12 35 35 H 1.08001 * 120.03955 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.96129 * 179.69790 * 18 17 16 37 37 H 1.08997 * 109.47245 * 30.28116 * 20 19 18 38 38 H 1.09007 * 109.46869 * 150.27730 * 20 19 18 39 39 H 1.08997 * 109.46899 * 300.00100 * 21 20 19 40 40 H 1.08999 * 109.46817 * 60.00222 * 21 20 19 41 41 H 0.96692 * 114.00271 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.96737 * 179.70232 * 23 19 18 43 43 H 1.08001 * 120.03456 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 2.4742 -6.1501 0.0018 13 6 1.7206 -7.4552 0.0018 14 8 0.5078 -7.4551 0.0009 15 7 2.3944 -8.6225 0.0029 16 6 1.6982 -9.8322 -0.0948 17 6 2.2510 -10.8988 -0.7914 18 6 1.5585 -12.0897 -0.8912 19 6 0.3214 -12.2244 -0.2882 20 6 -0.4282 -13.5276 -0.3930 21 6 -1.3156 -13.5067 -1.6392 22 8 -2.0269 -14.7422 -1.7382 23 6 -0.2320 -11.1640 0.4058 24 6 0.4529 -9.9688 0.5044 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5572 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8887 31 1 0.8537 -5.0447 0.8913 32 1 3.1008 -6.0920 0.8918 33 1 3.1009 -6.0929 -0.8882 34 1 3.3621 -8.6239 0.0712 35 1 3.2194 -10.7959 -1.2584 36 1 1.9857 -12.9180 -1.4370 37 1 0.2825 -14.3506 -0.4667 38 1 -1.0490 -13.6618 0.4929 39 1 -2.0264 -12.6837 -1.5654 40 1 -0.6948 -13.3725 -2.5250 41 1 -2.6103 -14.7997 -2.5072 42 1 -1.2005 -11.2708 0.8715 43 1 0.0204 -9.1411 1.0469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588154080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:57 Heat of formation + Delta-G solvation = -92.423692 kcal Electronic energy + Delta-G solvation = -21505.273107 eV Core-core repulsion = 18128.109355 eV Total energy + Delta-G solvation = -3377.163753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 8.08 seconds Orbital eigenvalues (eV) -40.70199 -39.03080 -37.27975 -35.36137 -34.84481 -32.78431 -32.32258 -31.16859 -29.90963 -28.00249 -25.68808 -23.80587 -23.17743 -22.41534 -21.14474 -20.27657 -20.02258 -18.01318 -17.78800 -16.99375 -16.17383 -16.05573 -15.71283 -15.36386 -14.77242 -14.60316 -14.58899 -14.35454 -14.05676 -13.70707 -13.56254 -12.95398 -12.65267 -12.31215 -12.24121 -11.88254 -11.74274 -11.71293 -11.62593 -11.35751 -11.00537 -10.58573 -10.52196 -10.44961 -10.39429 -10.35852 -9.85441 -9.63946 -9.26110 -9.13053 -9.00608 -8.31788 -8.25561 -5.96531 -3.99112 0.99555 1.19225 2.53432 2.91290 3.33110 3.39237 3.42291 3.49538 3.89611 4.47527 4.49565 4.66453 4.69526 4.79215 4.83444 4.92372 5.13050 5.16413 5.19347 5.25324 5.28896 5.38871 5.39250 5.60824 5.65274 5.74929 5.83077 6.06258 6.08172 6.13992 6.24950 6.30866 6.39184 6.50054 6.79460 6.83582 6.97330 7.16359 7.20150 7.23595 7.72407 7.87884 8.04032 8.05468 8.46260 9.08531 9.64569 11.14769 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.001996 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.713028 B =14024.517179 C =14502.511186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.514 6.514 15 N -0.682 5.682 16 C 0.149 3.851 17 C -0.147 4.147 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.076 4.076 21 C 0.079 3.921 22 O -0.578 6.578 23 C -0.095 4.095 24 C -0.120 4.120 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.411 0.589 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.381 0.619 42 H 0.125 0.875 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -28.675 -2.044 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.388 6.388 15 N -0.328 5.328 16 C 0.055 3.945 17 C -0.167 4.167 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.113 4.113 21 C 0.001 3.999 22 O -0.384 6.384 23 C -0.113 4.113 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.228 0.772 42 H 0.143 0.857 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.044 -28.578 -1.499 28.779 hybrid contribution 0.709 1.152 -0.568 1.467 sum 3.753 -27.427 -2.067 27.759 Atomic orbital electron populations 1.69975 1.06049 1.26523 1.50872 1.25049 0.94855 0.99257 0.95448 0.86602 0.79814 0.83567 0.78046 1.20714 1.21246 1.19926 1.21280 0.92983 0.91187 1.50476 0.92743 1.19097 0.94057 0.91268 0.97337 1.21652 0.99103 0.93905 1.00143 1.21475 0.96995 0.92659 1.03081 1.21826 1.00192 0.91326 1.04367 1.21356 0.88624 0.85394 0.74548 1.90704 1.14154 1.87236 1.46732 1.43749 1.10812 1.04348 1.73877 1.17849 0.93832 0.85889 0.96929 1.20894 1.01471 0.93530 1.00827 1.20794 0.94359 0.97095 0.99237 1.19637 0.95472 0.95368 1.00270 1.20404 0.98025 0.94709 0.98164 1.22186 0.94266 0.85756 0.97647 1.86438 1.62381 1.38060 1.51472 1.20980 0.99612 0.92090 0.98643 1.21359 0.94714 0.98235 0.99654 0.93034 0.96589 0.96558 0.93405 0.93416 0.91695 0.91684 0.88735 0.88736 0.75357 0.85659 0.85777 0.90406 0.90319 0.93306 0.93453 0.77210 0.85713 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.36 16 11 C -0.10 -1.79 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.70 5.70 -27.88 -0.16 -1.86 16 13 C 0.51 6.79 7.67 -10.98 -0.08 6.71 16 14 O -0.51 -8.85 13.42 5.56 0.07 -8.77 16 15 N -0.68 -6.89 5.34 -9.86 -0.05 -6.95 16 16 C 0.15 1.65 6.30 -83.70 -0.53 1.12 16 17 C -0.15 -1.31 9.97 -39.39 -0.39 -1.70 16 18 C -0.10 -0.81 9.69 -39.61 -0.38 -1.19 16 19 C -0.11 -0.95 5.14 -104.59 -0.54 -1.49 16 20 C -0.08 -0.58 5.71 -27.88 -0.16 -0.74 16 21 C 0.08 0.58 7.03 37.16 0.26 0.84 16 22 O -0.58 -4.42 13.66 -35.23 -0.48 -4.90 16 23 C -0.09 -0.97 9.69 -39.61 -0.38 -1.35 16 24 C -0.12 -1.45 8.70 -39.39 -0.34 -1.79 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.41 2.69 8.82 -40.82 -0.36 2.33 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.08 0.61 8.08 -51.92 -0.42 0.19 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 1.25 9.12 45.56 0.42 1.67 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.14 1.96 6.23 -52.49 -0.33 1.64 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -35.07 363.25 -8.93 -44.00 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.14 Total: 0.15 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.52 Total: -19.12 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.68 Total: -33.64 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.41 Total: -13.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.07 -8.93 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.427 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.08 seconds