Wall clock time and date at job start Tue Mar 31 2020 07:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00302 * 2 1 4 4 H 1.48494 * 109.47158 * 269.99856 * 3 2 1 5 5 H 1.48493 * 109.47270 * 30.00142 * 3 2 1 6 6 H 1.48506 * 109.47000 * 150.00291 * 3 2 1 7 7 C 1.37887 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46987 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47230 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47230 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46987 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00122 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99763 * 180.02562 * 13 12 11 16 16 C 1.39925 * 119.99512 * 184.62501 * 15 13 12 17 17 C 1.38870 * 120.06695 * 144.91470 * 16 15 13 18 18 C 1.38117 * 119.92504 * 180.29460 * 17 16 15 19 19 C 1.38279 * 120.06853 * 359.41825 * 18 17 16 20 20 C 1.50706 * 119.92667 * 180.32129 * 19 18 17 21 21 C 1.53002 * 109.47282 * 270.27664 * 20 19 18 22 22 O 1.42898 * 109.47140 * 180.02562 * 21 20 19 23 23 C 1.38279 * 120.14393 * 0.60397 * 19 18 17 24 24 C 1.38110 * 120.06800 * 359.67094 * 23 19 18 25 25 H 0.97000 * 119.99373 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47392 * 59.99645 * 9 7 2 27 27 H 1.09000 * 109.46822 * 299.99366 * 9 7 2 28 28 H 1.09006 * 109.47069 * 60.00026 * 10 9 7 29 29 H 1.08998 * 109.47439 * 300.00077 * 10 9 7 30 30 H 1.09006 * 109.46735 * 60.00236 * 11 10 9 31 31 H 1.08992 * 109.47144 * 300.00148 * 11 10 9 32 32 H 1.08998 * 109.47179 * 60.00131 * 12 11 10 33 33 H 1.09006 * 109.47248 * 300.00246 * 12 11 10 34 34 H 0.97003 * 120.00217 * 4.61241 * 15 13 12 35 35 H 1.08001 * 120.03955 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.96129 * 179.69790 * 18 17 16 37 37 H 1.08997 * 109.47245 * 30.28116 * 20 19 18 38 38 H 1.09007 * 109.46869 * 150.27730 * 20 19 18 39 39 H 1.08997 * 109.46899 * 300.00100 * 21 20 19 40 40 H 1.08999 * 109.46817 * 60.00222 * 21 20 19 41 41 H 0.96692 * 114.00271 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.96737 * 179.70232 * 23 19 18 43 43 H 1.08001 * 120.03456 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 2.4742 -6.1501 0.0018 13 6 1.7206 -7.4552 0.0018 14 8 0.5078 -7.4551 0.0009 15 7 2.3944 -8.6225 0.0029 16 6 1.6982 -9.8322 -0.0948 17 6 2.2510 -10.8988 -0.7914 18 6 1.5585 -12.0897 -0.8912 19 6 0.3214 -12.2244 -0.2882 20 6 -0.4282 -13.5276 -0.3930 21 6 -1.3156 -13.5067 -1.6392 22 8 -2.0269 -14.7422 -1.7382 23 6 -0.2320 -11.1640 0.4058 24 6 0.4529 -9.9688 0.5044 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5572 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8887 31 1 0.8537 -5.0447 0.8913 32 1 3.1008 -6.0920 0.8918 33 1 3.1009 -6.0929 -0.8882 34 1 3.3621 -8.6239 0.0712 35 1 3.2194 -10.7959 -1.2584 36 1 1.9857 -12.9180 -1.4370 37 1 0.2825 -14.3506 -0.4667 38 1 -1.0490 -13.6618 0.4929 39 1 -2.0264 -12.6837 -1.5654 40 1 -0.6948 -13.3725 -2.5250 41 1 -2.6103 -14.7997 -2.5072 42 1 -1.2005 -11.2708 0.8715 43 1 0.0204 -9.1411 1.0469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588154080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:55 Heat of formation + Delta-G solvation = -116.405115 kcal Electronic energy + Delta-G solvation = -21506.313020 eV Core-core repulsion = 18128.109355 eV Total energy + Delta-G solvation = -3378.203665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60914 -39.87772 -37.88908 -36.71647 -36.03166 -34.64130 -33.21231 -31.91625 -31.48922 -28.93950 -27.31680 -24.88405 -23.93323 -23.75578 -22.09017 -21.62502 -21.23015 -18.80390 -18.45463 -18.36875 -17.94905 -17.06315 -16.52749 -16.46309 -16.14649 -15.69987 -15.47065 -15.21208 -15.16136 -14.63647 -14.51959 -14.33087 -13.93383 -13.60245 -13.54360 -13.30317 -12.88667 -12.82656 -12.57468 -12.37385 -12.33802 -12.17022 -12.14506 -12.04339 -11.39558 -11.35966 -11.24553 -11.11661 -10.91009 -10.74935 -10.55282 -9.88853 -9.04987 -8.19055 -6.31167 0.22107 0.44256 1.40272 1.42487 1.53552 1.55939 2.04937 2.41761 2.76572 3.13712 3.35941 3.69668 3.88671 4.00387 4.04953 4.13337 4.15586 4.17317 4.35669 4.45885 4.50966 4.55093 4.61259 4.67640 4.72635 4.82885 4.86627 4.95133 5.06818 5.10999 5.18013 5.31494 5.32190 5.37342 5.38528 5.52848 5.57469 5.66882 5.77963 5.88022 6.06391 6.24966 6.42812 6.85493 6.87533 7.14085 7.38465 8.93137 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.001996 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.713028 B =14024.517179 C =14502.511186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.511 3.489 14 O -0.565 6.565 15 N -0.663 5.663 16 C 0.128 3.872 17 C -0.138 4.138 18 C -0.095 4.095 19 C -0.103 4.103 20 C -0.074 4.074 21 C 0.080 3.920 22 O -0.594 6.594 23 C -0.106 4.106 24 C -0.145 4.145 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.430 0.570 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.398 0.602 42 H 0.128 0.872 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -29.951 -2.863 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.164 4.164 13 C 0.300 3.700 14 O -0.442 6.442 15 N -0.310 5.310 16 C 0.034 3.966 17 C -0.158 4.158 18 C -0.113 4.113 19 C -0.104 4.104 20 C -0.111 4.111 21 C 0.002 3.998 22 O -0.403 6.403 23 C -0.125 4.125 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.269 0.731 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.146 0.854 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.186 -29.895 -2.325 30.617 hybrid contribution -0.328 1.452 -0.326 1.523 sum 5.858 -28.443 -2.651 29.161 Atomic orbital electron populations 1.70134 1.08071 1.27729 1.51888 1.26107 0.95799 1.03780 0.94825 0.85374 0.78672 0.78041 0.78507 1.19725 1.20999 1.18284 1.21767 0.93782 0.92215 1.50199 0.91498 1.19067 0.94736 0.93860 0.94307 1.21448 0.97807 0.92619 1.01459 1.21258 0.97510 0.93627 1.01120 1.21692 0.98925 0.88547 1.07247 1.21479 0.88012 0.86498 0.73971 1.90704 1.16325 1.87922 1.49292 1.43486 1.11652 1.03284 1.72551 1.18039 0.93838 0.86739 0.97995 1.21199 1.02398 0.92630 0.99621 1.21180 0.93805 0.97756 0.98548 1.19805 0.95869 0.95262 0.99433 1.20400 0.98196 0.94211 0.98302 1.22151 0.94266 0.85564 0.97770 1.86388 1.62940 1.38068 1.52873 1.21084 0.99941 0.92120 0.99322 1.21283 0.96022 0.98223 1.01023 0.92880 0.99754 0.99718 0.91937 0.91927 0.93841 0.93775 0.85753 0.85761 0.73068 0.82712 0.82875 0.89362 0.90719 0.93851 0.92507 0.75175 0.85388 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.29 21.45 0.28 -58.77 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.83 5.15 30.59 0.16 -3.67 16 11 C -0.10 -3.39 4.50 30.59 0.14 -3.25 16 12 C -0.12 -2.85 5.70 29.85 0.17 -2.68 16 13 C 0.51 13.32 7.67 87.66 0.67 13.99 16 14 O -0.56 -20.39 13.42 -3.03 -0.04 -20.43 16 15 N -0.66 -12.35 5.34 -303.50 -1.62 -13.97 16 16 C 0.13 2.70 6.30 38.15 0.24 2.94 16 17 C -0.14 -2.09 9.97 22.39 0.22 -1.86 16 18 C -0.09 -1.32 9.69 22.25 0.22 -1.10 16 19 C -0.10 -1.71 5.14 -19.84 -0.10 -1.81 16 20 C -0.07 -1.02 5.71 29.85 0.17 -0.85 16 21 C 0.08 1.07 7.03 71.98 0.51 1.57 16 22 O -0.59 -8.23 13.66 -148.98 -2.03 -10.27 16 23 C -0.11 -2.22 9.69 22.25 0.22 -2.01 16 24 C -0.15 -3.68 8.70 22.39 0.19 -3.48 16 25 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.06 2.31 8.14 -2.38 -0.02 2.30 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 31 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.43 4.34 8.82 -92.71 -0.82 3.53 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 38 H 0.07 1.09 8.08 -2.38 -0.02 1.07 16 39 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.40 2.06 9.12 -74.06 -0.68 1.38 16 42 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.11 3.46 6.23 -2.91 -0.02 3.44 16 Total: -1.00 -79.47 363.25 1.78 -77.70 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.49 Total: 11.20 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.65 Total: -32.20 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.33 Total: -72.75 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.08 Total: -30.70 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.47 1.78 -77.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588154080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.706 kcal (2) G-P(sol) polarization free energy of solvation -79.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds