Wall clock time and date at job start Tue Mar 31 2020 09:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46614 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00307 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99808 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00431 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.68205 * 325.52873 * 16 15 13 18 18 C 1.53397 * 109.69055 * 204.99958 * 16 15 13 19 19 C 1.53113 * 109.41887 * 190.67706 * 18 16 15 20 20 C 1.53343 * 109.53892 * 69.98784 * 19 18 16 21 21 C 1.50931 * 108.43008 * 309.97261 * 20 19 18 22 22 O 1.33831 * 127.79954 * 196.70697 * 21 20 19 23 23 C 1.34524 * 109.41541 * 179.97438 * 22 21 20 24 24 C 1.34771 * 108.48459 * 0.04895 * 23 22 21 25 25 C 1.34883 * 123.90274 * 16.72681 * 21 20 19 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 32 32 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 33 33 H 1.08998 * 109.47018 * 300.00053 * 12 11 10 34 34 H 1.09002 * 109.47113 * 60.00475 * 12 11 10 35 35 H 0.97005 * 119.99841 * 359.97438 * 15 13 12 36 36 H 1.09003 * 109.47914 * 310.66844 * 18 16 15 37 37 H 1.09006 * 109.47876 * 70.69621 * 18 16 15 38 38 H 1.08999 * 109.46309 * 190.00961 * 19 18 16 39 39 H 1.09004 * 109.46139 * 309.98517 * 19 18 16 40 40 H 1.09001 * 109.64263 * 69.65702 * 20 19 18 41 41 H 1.09001 * 109.64592 * 190.28633 * 20 19 18 42 42 H 1.07996 * 125.75690 * 180.02562 * 23 22 21 43 43 H 1.07990 * 126.67897 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 6 2.4745 -6.1500 0.0288 13 6 1.7209 -7.4551 0.0345 14 8 0.5082 -7.4550 0.0336 15 7 2.3948 -8.6222 0.0407 16 6 1.6624 -9.8909 0.0468 17 1 0.7458 -9.7829 0.6268 18 6 2.5373 -10.9899 0.6631 19 6 1.8825 -12.3538 0.4278 20 6 1.9633 -12.7114 -1.0612 21 6 1.4577 -11.5364 -1.8622 22 8 1.0704 -11.5227 -3.1432 23 6 0.6873 -10.2783 -3.4813 24 6 0.8307 -9.4798 -2.4051 25 6 1.3252 -10.2890 -1.3665 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 0.8539 -5.0406 0.9135 32 1 0.8533 -5.0490 -0.8665 33 1 3.1012 -6.0966 -0.8614 34 1 3.1011 -6.0879 0.9186 35 1 3.3648 -8.6222 0.0411 36 1 3.5225 -10.9742 0.1970 37 1 2.6391 -10.8155 1.7343 38 1 2.4033 -13.1123 1.0122 39 1 0.8375 -12.3127 0.7349 40 1 2.9981 -12.9214 -1.3319 41 1 1.3441 -13.5856 -1.2622 42 1 0.3263 -9.9708 -4.4516 43 1 0.6081 -8.4245 -2.3506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588277001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:31 Heat of formation + Delta-G solvation = -56.598159 kcal Electronic energy + Delta-G solvation = -22533.856155 eV Core-core repulsion = 19158.245914 eV Total energy + Delta-G solvation = -3375.610241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.88207 -39.76994 -37.54547 -34.90397 -34.22867 -32.78435 -32.51000 -30.24372 -29.52163 -28.53117 -25.64089 -23.78510 -22.65386 -22.24011 -21.43553 -20.18319 -19.93569 -19.25682 -17.54135 -16.72001 -16.61243 -16.15578 -15.79779 -15.45897 -15.12174 -14.77807 -14.42626 -14.10918 -13.86554 -13.60278 -13.15822 -12.92535 -12.62736 -12.53810 -12.51474 -12.10777 -11.74761 -11.63240 -11.53306 -11.38115 -11.11774 -10.97857 -10.51196 -10.46794 -10.38731 -9.87711 -9.68271 -9.59287 -9.21919 -9.18665 -8.94965 -8.46535 -8.29278 -5.93904 -3.96237 1.54809 2.42766 2.72620 2.81500 3.23663 3.34060 3.41173 3.45224 4.25572 4.33549 4.48771 4.50418 4.61865 4.75189 4.92052 4.97650 5.08706 5.12505 5.21109 5.35719 5.39749 5.40887 5.42320 5.47828 5.53839 5.77191 5.80761 5.91667 5.93150 5.99783 6.16923 6.33225 6.38031 6.43129 6.58058 6.86825 7.00084 7.04887 7.22513 7.49251 7.76235 7.92241 8.07886 8.32434 8.49796 9.11804 9.67360 11.17488 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033666 B = 0.002446 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.511756 B =11444.885712 C =11884.056371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.532 6.532 15 N -0.729 5.729 16 C 0.214 3.786 17 H 0.097 0.903 18 C -0.128 4.128 19 C -0.112 4.112 20 C -0.036 4.036 21 C -0.017 4.017 22 O -0.173 6.173 23 C -0.055 4.055 24 C -0.180 4.180 25 C -0.187 4.187 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.203 0.797 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -28.771 -1.532 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.301 3.699 14 O -0.407 6.407 15 N -0.382 5.382 16 C 0.109 3.891 17 H 0.115 0.885 18 C -0.166 4.166 19 C -0.150 4.150 20 C -0.073 4.073 21 C -0.068 4.068 22 O -0.069 6.069 23 C -0.122 4.122 24 C -0.199 4.199 25 C -0.190 4.190 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.219 0.781 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.896 -28.882 -1.700 29.527 hybrid contribution 0.795 1.293 -0.177 1.528 sum 6.692 -27.589 -1.877 28.451 Atomic orbital electron populations 1.69989 1.06047 1.26374 1.51082 1.25052 0.94841 0.99241 0.95501 0.86558 0.80081 0.83943 0.77539 1.19784 1.21062 1.21052 1.21326 0.93011 0.91201 1.50188 0.92716 1.19100 0.94070 0.91295 0.97299 1.21649 0.99062 0.94036 1.00034 1.21443 0.97003 0.92707 1.02903 1.21802 1.00099 0.92079 1.03928 1.21097 0.88528 0.85546 0.74769 1.90708 1.14136 1.87582 1.48302 1.46101 1.10023 1.05172 1.76872 1.19243 0.95949 0.83030 0.90861 0.88519 1.21908 0.99238 0.93828 1.01613 1.21542 1.02347 0.96814 0.94283 1.20210 1.01397 0.93111 0.92554 1.22301 1.04448 0.97267 0.82812 1.83885 1.64403 1.31987 1.26657 1.24098 1.05974 0.81152 1.00932 1.21586 1.04314 1.01419 0.92595 1.20526 1.07298 0.93246 0.97921 0.93112 0.96590 0.96615 0.93521 0.93503 0.91818 0.91882 0.89249 0.89179 0.76673 0.90895 0.90315 0.89868 0.90803 0.89590 0.89737 0.78084 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 13 C 0.51 7.16 7.15 -10.99 -0.08 7.08 16 14 O -0.53 -9.61 14.98 5.56 0.08 -9.53 16 15 N -0.73 -7.56 5.01 -54.76 -0.27 -7.83 16 16 C 0.21 2.19 2.82 -68.90 -0.19 1.99 16 17 H 0.10 1.19 7.57 -51.93 -0.39 0.80 16 18 C -0.13 -0.82 5.41 -26.47 -0.14 -0.96 16 19 C -0.11 -0.60 5.89 -26.50 -0.16 -0.75 16 20 C -0.04 -0.23 6.30 -27.59 -0.17 -0.40 16 21 C -0.02 -0.17 7.22 -35.39 -0.26 -0.43 16 22 O -0.17 -1.96 10.65 6.35 0.07 -1.89 16 23 C -0.05 -0.59 12.10 29.50 0.36 -0.24 16 24 C -0.18 -2.30 10.30 -39.90 -0.41 -2.71 16 25 C -0.19 -2.17 5.62 -104.93 -0.59 -2.76 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.00 8.60 -40.82 -0.35 2.65 16 36 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.15 2.13 7.21 -52.49 -0.38 1.75 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -35.20 353.84 -8.69 -43.89 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.00 Total: -0.86 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.61 Total: -19.13 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.46 Total: -34.84 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.15 Total: -11.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.20 -8.69 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588277001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.707 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds