Wall clock time and date at job start Tue Mar 31 2020 09:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46614 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00307 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99808 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00431 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.68205 * 325.52873 * 16 15 13 18 18 C 1.53397 * 109.69055 * 204.99958 * 16 15 13 19 19 C 1.53113 * 109.41887 * 190.67706 * 18 16 15 20 20 C 1.53343 * 109.53892 * 69.98784 * 19 18 16 21 21 C 1.50931 * 108.43008 * 309.97261 * 20 19 18 22 22 O 1.33831 * 127.79954 * 196.70697 * 21 20 19 23 23 C 1.34524 * 109.41541 * 179.97438 * 22 21 20 24 24 C 1.34771 * 108.48459 * 0.04895 * 23 22 21 25 25 C 1.34883 * 123.90274 * 16.72681 * 21 20 19 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 32 32 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 33 33 H 1.08998 * 109.47018 * 300.00053 * 12 11 10 34 34 H 1.09002 * 109.47113 * 60.00475 * 12 11 10 35 35 H 0.97005 * 119.99841 * 359.97438 * 15 13 12 36 36 H 1.09003 * 109.47914 * 310.66844 * 18 16 15 37 37 H 1.09006 * 109.47876 * 70.69621 * 18 16 15 38 38 H 1.08999 * 109.46309 * 190.00961 * 19 18 16 39 39 H 1.09004 * 109.46139 * 309.98517 * 19 18 16 40 40 H 1.09001 * 109.64263 * 69.65702 * 20 19 18 41 41 H 1.09001 * 109.64592 * 190.28633 * 20 19 18 42 42 H 1.07996 * 125.75690 * 180.02562 * 23 22 21 43 43 H 1.07990 * 126.67897 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 6 2.4745 -6.1500 0.0288 13 6 1.7209 -7.4551 0.0345 14 8 0.5082 -7.4550 0.0336 15 7 2.3948 -8.6222 0.0407 16 6 1.6624 -9.8909 0.0468 17 1 0.7458 -9.7829 0.6268 18 6 2.5373 -10.9899 0.6631 19 6 1.8825 -12.3538 0.4278 20 6 1.9633 -12.7114 -1.0612 21 6 1.4577 -11.5364 -1.8622 22 8 1.0704 -11.5227 -3.1432 23 6 0.6873 -10.2783 -3.4813 24 6 0.8307 -9.4798 -2.4051 25 6 1.3252 -10.2890 -1.3665 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 0.8539 -5.0406 0.9135 32 1 0.8533 -5.0490 -0.8665 33 1 3.1012 -6.0966 -0.8614 34 1 3.1011 -6.0879 0.9186 35 1 3.3648 -8.6222 0.0411 36 1 3.5225 -10.9742 0.1970 37 1 2.6391 -10.8155 1.7343 38 1 2.4033 -13.1123 1.0122 39 1 0.8375 -12.3127 0.7349 40 1 2.9981 -12.9214 -1.3319 41 1 1.3441 -13.5856 -1.2622 42 1 0.3263 -9.9708 -4.4516 43 1 0.6081 -8.4245 -2.3506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588277001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:29 Heat of formation + Delta-G solvation = -79.082192 kcal Electronic energy + Delta-G solvation = -22534.831136 eV Core-core repulsion = 19158.245914 eV Total energy + Delta-G solvation = -3376.585222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.70878 -40.84084 -38.31914 -36.62675 -35.10143 -34.61285 -33.58189 -31.66249 -30.44918 -29.47836 -27.37379 -24.84984 -23.76822 -23.23610 -22.37630 -21.76971 -21.19239 -19.98111 -18.45926 -18.32885 -17.80214 -17.41476 -16.84934 -16.62056 -16.45093 -15.87280 -15.47446 -15.29724 -14.81570 -14.58971 -14.46531 -14.03917 -13.88867 -13.58854 -13.53688 -13.31157 -13.21897 -13.11207 -12.84520 -12.33840 -12.22399 -12.15818 -12.14295 -11.88352 -11.67520 -11.39311 -11.36315 -11.15013 -10.79317 -10.63094 -10.56635 -10.17869 -9.26234 -8.19596 -6.31839 0.74234 1.39783 1.40949 1.51288 1.54482 1.68754 2.03173 2.31337 2.41744 3.13119 3.63928 3.75471 3.80154 3.89056 4.03556 4.09463 4.13750 4.17294 4.29220 4.42488 4.55567 4.59559 4.67092 4.67854 4.83321 4.84724 4.89020 4.93604 4.97610 5.11223 5.18118 5.19238 5.27448 5.30156 5.32632 5.37000 5.51280 5.55458 5.59391 5.76997 5.87168 6.16196 6.24510 6.59328 6.86857 7.31944 7.37862 8.92984 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033666 B = 0.002446 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.511756 B =11444.885712 C =11884.056371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.095 4.095 11 C -0.095 4.095 12 C -0.128 4.128 13 C 0.512 3.488 14 O -0.583 6.583 15 N -0.710 5.710 16 C 0.211 3.789 17 H 0.067 0.933 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.036 4.036 21 C -0.012 4.012 22 O -0.180 6.180 23 C -0.050 4.050 24 C -0.214 4.214 25 C -0.212 4.212 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.017 1.017 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.417 0.583 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.229 0.771 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 -30.384 -1.274 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.168 4.168 13 C 0.300 3.700 14 O -0.463 6.463 15 N -0.362 5.362 16 C 0.106 3.894 17 H 0.085 0.915 18 C -0.158 4.158 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.064 4.064 22 O -0.076 6.076 23 C -0.117 4.117 24 C -0.234 4.234 25 C -0.214 4.214 26 H 0.072 0.928 27 H 0.003 0.997 28 H 0.002 0.998 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.254 0.746 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.246 0.754 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.189 -30.535 -1.440 31.920 hybrid contribution -0.284 1.758 -0.284 1.803 sum 8.906 -28.777 -1.724 30.173 Atomic orbital electron populations 1.70145 1.08102 1.27705 1.51973 1.26116 0.95797 1.03807 0.94788 0.85317 0.79190 0.78328 0.77705 1.18053 1.20455 1.20421 1.21781 0.93743 0.92191 1.50108 0.91562 1.19058 0.94686 0.93850 0.94261 1.21446 0.97800 0.92729 1.01289 1.21231 0.97463 0.93686 1.00897 1.21672 0.98934 0.89633 1.06533 1.21177 0.87867 0.86699 0.74254 1.90696 1.16365 1.88283 1.50960 1.45908 1.10871 1.04420 1.74990 1.19352 0.95869 0.83898 0.90246 0.91479 1.21917 0.99031 0.92767 1.02081 1.21592 1.02127 0.96909 0.94032 1.20477 1.02634 0.91820 0.92293 1.23073 1.02847 0.98083 0.82356 1.83908 1.64403 1.31916 1.27373 1.24550 1.04896 0.80755 1.01482 1.21593 1.06492 1.00801 0.94483 1.20718 1.08455 0.93918 0.98319 0.92843 0.99706 0.99836 0.92198 0.91975 0.93842 0.94143 0.86811 0.86194 0.74594 0.89253 0.89089 0.86654 0.91882 0.87418 0.88358 0.75434 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.29 21.45 0.28 -59.48 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 11 C -0.09 -3.52 4.50 30.60 0.14 -3.39 16 12 C -0.13 -3.29 5.70 29.85 0.17 -3.12 16 13 C 0.51 14.44 7.15 87.66 0.63 15.06 16 14 O -0.58 -22.45 14.98 -3.01 -0.05 -22.49 16 15 N -0.71 -14.09 5.01 -445.55 -2.23 -16.32 16 16 C 0.21 4.24 2.82 44.36 0.13 4.36 16 17 H 0.07 1.74 7.57 -2.39 -0.02 1.73 16 18 C -0.12 -1.22 5.41 30.76 0.17 -1.06 16 19 C -0.11 -0.83 5.89 30.75 0.18 -0.65 16 20 C -0.04 -0.34 6.30 30.04 0.19 -0.15 16 21 C -0.01 -0.24 7.22 24.99 0.18 -0.06 16 22 O -0.18 -3.89 10.65 -0.18 0.00 -3.90 16 23 C -0.05 -1.09 12.10 67.02 0.81 -0.28 16 24 C -0.21 -5.74 10.30 22.06 0.23 -5.51 16 25 C -0.21 -4.90 5.62 -20.06 -0.11 -5.01 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.42 5.25 8.60 -92.70 -0.80 4.45 16 36 H 0.09 0.66 8.10 -2.39 -0.02 0.64 16 37 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.06 0.64 8.11 -2.38 -0.02 0.62 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.23 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.12 3.89 7.21 -2.92 -0.02 3.87 16 Total: -1.00 -81.07 353.84 3.93 -77.14 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.20 Total: 11.74 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 3.70 Total: -33.96 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.95 Total: -75.81 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -81.07 3.93 -77.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588277001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.942 kcal (2) G-P(sol) polarization free energy of solvation -81.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds