Wall clock time and date at job start Tue Mar 31 2020 09:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99993 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00240 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.67683 * 34.48128 * 16 15 13 18 18 C 1.53402 * 109.68303 * 154.99890 * 16 15 13 19 19 C 1.53123 * 109.41095 * 169.32423 * 18 16 15 20 20 C 1.53333 * 109.53935 * 290.01116 * 19 18 16 21 21 C 1.50930 * 108.43017 * 50.03611 * 20 19 18 22 22 O 1.33828 * 127.80247 * 163.29569 * 21 20 19 23 23 C 1.34522 * 109.41829 * 180.02562 * 22 21 20 24 24 C 1.34763 * 108.48538 * 359.94296 * 23 22 21 25 25 C 1.34887 * 123.90065 * 343.26125 * 21 20 19 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 32 32 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 33 33 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 34 34 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 35 35 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 36 36 H 1.09006 * 109.48262 * 289.30661 * 18 16 15 37 37 H 1.08995 * 109.48057 * 49.34056 * 18 16 15 38 38 H 1.09000 * 109.45900 * 50.03676 * 19 18 16 39 39 H 1.09000 * 109.45474 * 169.99502 * 19 18 16 40 40 H 1.09001 * 109.64305 * 169.71654 * 20 19 18 41 41 H 1.08997 * 109.64398 * 290.13770 * 20 19 18 42 42 H 1.07996 * 125.75837 * 179.97438 * 23 22 21 43 43 H 1.08003 * 126.68696 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5081 -7.4552 -0.0009 15 7 2.3948 -8.6223 -0.0029 16 6 1.6623 -9.8911 -0.0023 17 1 0.7454 -9.7858 -0.5823 18 6 2.5369 -10.9929 -0.6140 19 6 1.8822 -12.3557 -0.3716 20 6 1.9641 -12.7061 1.1189 21 6 1.4590 -11.5274 1.9147 22 8 1.0726 -11.5075 3.1958 23 6 0.6897 -10.2615 3.5283 24 6 0.8323 -9.4683 2.4482 25 6 1.3262 -10.2823 1.4130 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.8533 -5.0451 0.8886 32 1 0.8539 -5.0446 -0.8913 33 1 3.1010 -6.0919 -0.8918 34 1 3.1012 -6.0927 0.8881 35 1 3.3648 -8.6223 -0.0032 36 1 2.6379 -10.8237 -1.6861 37 1 3.5224 -10.9751 -0.1486 38 1 0.8370 -12.3162 -0.6785 39 1 2.4026 -13.1170 -0.9527 40 1 1.3451 -13.5794 1.3246 41 1 2.9985 -12.9185 1.3891 42 1 0.3294 -9.9494 4.4973 43 1 0.6096 -8.4131 2.3887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588277002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:38 Heat of formation + Delta-G solvation = -56.519204 kcal Electronic energy + Delta-G solvation = -22533.674588 eV Core-core repulsion = 19158.067770 eV Total energy + Delta-G solvation = -3375.606817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.88241 -39.76857 -37.54466 -34.90278 -34.22774 -32.78355 -32.50849 -30.24313 -29.52096 -28.53191 -25.63877 -23.78468 -22.65359 -22.23801 -21.43538 -20.18207 -19.93474 -19.25707 -17.54265 -16.71927 -16.61159 -16.14964 -15.79695 -15.45825 -15.12367 -14.77774 -14.43295 -14.10711 -13.86388 -13.60336 -13.15788 -12.92491 -12.61985 -12.53650 -12.51385 -12.10677 -11.74191 -11.63426 -11.53442 -11.38062 -11.11886 -10.94889 -10.51957 -10.49773 -10.38193 -9.87718 -9.68194 -9.58737 -9.21857 -9.18599 -8.96716 -8.46564 -8.28467 -5.93403 -3.95919 1.54782 2.42733 2.72617 2.81483 3.23669 3.36467 3.40742 3.43070 4.25614 4.33584 4.48749 4.50571 4.61914 4.75274 4.92100 4.97613 5.08725 5.12478 5.21109 5.35759 5.39806 5.41008 5.42467 5.47954 5.53820 5.77233 5.80796 5.91713 5.93123 5.99768 6.16992 6.33288 6.38020 6.43112 6.58115 6.86916 7.00095 7.04961 7.22611 7.49274 7.75883 7.92444 8.08190 8.32451 8.49968 9.11661 9.67506 11.17922 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.002446 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.900344 B =11443.927063 C =11882.802454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.532 6.532 15 N -0.729 5.729 16 C 0.214 3.786 17 H 0.097 0.903 18 C -0.128 4.128 19 C -0.112 4.112 20 C -0.036 4.036 21 C -0.017 4.017 22 O -0.173 6.173 23 C -0.055 4.055 24 C -0.180 4.180 25 C -0.187 4.187 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.203 0.797 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 -28.738 1.663 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.301 3.699 14 O -0.407 6.407 15 N -0.382 5.382 16 C 0.109 3.891 17 H 0.115 0.885 18 C -0.166 4.166 19 C -0.150 4.150 20 C -0.073 4.073 21 C -0.068 4.068 22 O -0.069 6.069 23 C -0.121 4.121 24 C -0.199 4.199 25 C -0.190 4.190 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.219 0.781 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.862 -28.844 1.835 29.491 hybrid contribution 0.823 1.284 0.172 1.535 sum 6.685 -27.560 2.007 28.430 Atomic orbital electron populations 1.69968 1.06048 1.26606 1.50878 1.25046 0.94843 0.99215 0.95474 0.86670 0.79573 0.83261 0.78541 1.21325 1.20292 1.20289 1.21252 0.92937 0.91229 1.50482 0.92823 1.19089 0.94053 0.91257 0.97286 1.21649 0.99069 0.94041 1.00029 1.21441 0.97004 0.92705 1.02904 1.21799 1.00100 0.92080 1.03928 1.21097 0.88529 0.85548 0.74768 1.90710 1.14132 1.87584 1.48309 1.46103 1.10022 1.05174 1.76868 1.19243 0.95957 0.83036 0.90847 0.88516 1.21910 0.99240 0.93812 1.01624 1.21541 1.02348 0.96841 0.94255 1.20198 1.01425 0.93043 0.92610 1.22293 1.04458 0.97284 0.82772 1.83883 1.64425 1.31917 1.26707 1.24095 1.05973 0.81142 1.00938 1.21588 1.04320 1.01426 0.92587 1.20526 1.07302 0.93247 0.97912 0.92994 0.96629 0.96602 0.93504 0.93522 0.91882 0.91817 0.89180 0.89249 0.76673 0.90314 0.90895 0.90803 0.89872 0.89761 0.89588 0.78082 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.87 5.70 -27.89 -0.16 -2.03 16 13 C 0.51 7.16 7.15 -10.99 -0.08 7.08 16 14 O -0.53 -9.62 14.99 5.56 0.08 -9.54 16 15 N -0.73 -7.56 5.01 -54.76 -0.27 -7.84 16 16 C 0.21 2.19 2.82 -68.90 -0.19 1.99 16 17 H 0.10 1.19 7.57 -51.93 -0.39 0.80 16 18 C -0.13 -0.82 5.41 -26.46 -0.14 -0.96 16 19 C -0.11 -0.60 5.89 -26.50 -0.16 -0.75 16 20 C -0.04 -0.23 6.30 -27.60 -0.17 -0.40 16 21 C -0.02 -0.17 7.22 -35.39 -0.26 -0.43 16 22 O -0.17 -1.96 10.65 6.37 0.07 -1.89 16 23 C -0.05 -0.59 12.10 29.50 0.36 -0.23 16 24 C -0.18 -2.30 10.31 -39.90 -0.41 -2.71 16 25 C -0.19 -2.17 5.62 -104.93 -0.59 -2.76 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.40 3.00 8.60 -40.82 -0.35 2.65 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 38 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.15 2.13 7.21 -52.48 -0.38 1.75 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -35.16 353.85 -8.69 -43.85 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.00 Total: -0.79 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.61 Total: -19.14 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.46 Total: -34.86 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.15 Total: -11.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.16 -8.69 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588277002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.670 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds