Wall clock time and date at job start Tue Mar 31 2020 08:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99928 * 2 1 4 4 H 1.48492 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46989 * 300.00865 * 3 2 1 6 6 H 1.48504 * 109.46502 * 60.00748 * 3 2 1 7 7 C 1.37877 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99774 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46678 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46940 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47451 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47395 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99888 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00268 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00263 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47102 * 180.02562 * 16 15 13 18 18 C 1.38258 * 119.99734 * 260.01749 * 17 16 15 19 19 C 1.38213 * 120.00082 * 179.97438 * 18 17 16 20 20 C 1.38263 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.38215 * 119.99577 * 359.70149 * 20 19 18 22 22 C 1.38209 * 120.00423 * 79.99836 * 17 16 15 23 23 C 1.50701 * 119.99797 * 0.02562 * 22 17 16 24 24 O 1.42903 * 109.46878 * 179.97438 * 23 22 17 25 25 H 0.96992 * 120.00166 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46656 * 60.00229 * 9 7 2 27 27 H 1.08993 * 109.47023 * 300.00546 * 9 7 2 28 28 H 1.08998 * 109.47555 * 60.00577 * 10 9 7 29 29 H 1.08999 * 109.47489 * 299.99588 * 10 9 7 30 30 H 1.09000 * 109.47166 * 59.99968 * 11 10 9 31 31 H 1.09002 * 109.47258 * 300.00606 * 11 10 9 32 32 H 1.09000 * 109.47049 * 59.99789 * 12 11 10 33 33 H 1.09002 * 109.46782 * 299.99907 * 12 11 10 34 34 H 0.97001 * 119.99949 * 0.02562 * 15 13 12 35 35 H 1.09000 * 109.47273 * 59.99796 * 16 15 13 36 36 H 1.09002 * 109.47004 * 299.99640 * 16 15 13 37 37 H 1.08002 * 120.00011 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00169 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.99986 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.99524 * 180.29857 * 21 20 19 41 41 H 1.09002 * 109.47060 * 299.99979 * 23 22 17 42 42 H 1.09001 * 109.47380 * 60.00066 * 23 22 17 43 43 H 0.96700 * 113.99509 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 6 1.7212 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0026 15 7 2.3951 -8.6223 -0.0010 16 6 1.6627 -9.8910 -0.0016 17 6 2.6420 -11.0364 0.0001 18 6 2.9352 -11.6970 -1.1785 19 6 3.8338 -12.7472 -1.1770 20 6 4.4391 -13.1374 0.0032 21 6 4.1502 -12.4733 1.1804 22 6 3.2474 -11.4263 1.1798 23 6 2.9277 -10.7063 2.4645 24 8 3.6727 -11.2895 3.5355 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8541 -5.0446 -0.8914 31 1 0.8534 -5.0451 0.8885 32 1 3.1007 -6.0923 0.8899 33 1 3.1019 -6.0922 -0.8901 34 1 3.3651 -8.6223 0.0008 35 1 1.0369 -9.9489 -0.8923 36 1 1.0351 -9.9487 0.8877 37 1 2.4626 -11.3920 -2.1005 38 1 4.0631 -13.2630 -2.0977 39 1 5.1409 -13.9583 0.0044 40 1 4.6268 -12.7751 2.1015 41 1 3.1940 -9.6538 2.3671 42 1 1.8617 -10.7934 2.6744 43 1 3.5165 -10.8746 4.3949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588303999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:02 Heat of formation + Delta-G solvation = -116.118666 kcal Electronic energy + Delta-G solvation = -21861.942649 eV Core-core repulsion = 18483.751405 eV Total energy + Delta-G solvation = -3378.191244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.15347 -40.23691 -37.56788 -36.72243 -35.99477 -34.60240 -32.85828 -32.24923 -31.32757 -28.17978 -27.14052 -26.36575 -24.04469 -22.92418 -21.84029 -21.72360 -21.26684 -18.48145 -18.41760 -18.10791 -17.40086 -16.96266 -16.89071 -16.47686 -16.11894 -15.91640 -15.70109 -15.42292 -14.79137 -14.69549 -14.54435 -14.13362 -13.89447 -13.58238 -13.44288 -13.39758 -13.24505 -13.04909 -12.83573 -12.31176 -12.13974 -12.12718 -11.98414 -11.80018 -11.36900 -11.35757 -11.31158 -11.15852 -10.84456 -10.55301 -10.14462 -9.80660 -9.60731 -8.18449 -6.30427 0.22518 0.42352 1.40691 1.41575 1.55072 1.64965 2.22333 2.42309 2.85676 3.14272 3.21937 3.63017 3.83819 3.87546 4.04123 4.07926 4.15209 4.16977 4.30580 4.40102 4.43431 4.57724 4.64710 4.69767 4.73443 4.80163 4.86108 4.89825 5.00266 5.11974 5.20788 5.33165 5.34233 5.42305 5.50263 5.58067 5.58453 5.61819 5.79245 5.89034 6.02551 6.25991 6.52696 6.81669 6.88358 7.25055 7.39166 8.93973 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.002196 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.169403 B =12748.975125 C =12996.940943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.514 3.486 14 O -0.585 6.585 15 N -0.714 5.714 16 C 0.161 3.839 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.085 4.085 23 C 0.114 3.886 24 O -0.583 6.583 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -29.180 1.675 31.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.302 3.698 14 O -0.465 6.465 15 N -0.367 5.367 16 C 0.038 3.962 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.142 4.142 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.086 4.086 23 C 0.037 3.963 24 O -0.392 6.392 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.251 0.749 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.296 -29.462 1.204 31.576 hybrid contribution -0.167 1.342 0.467 1.431 sum 11.128 -28.119 1.670 30.287 Atomic orbital electron populations 1.70136 1.08044 1.27672 1.52000 1.26101 0.95802 1.03756 0.94860 0.85331 0.79188 0.78429 0.77670 1.18107 1.20506 1.20469 1.21785 0.93730 0.92221 1.50023 0.91605 1.19070 0.94719 0.93817 0.94343 1.21448 0.97805 0.92784 1.01294 1.21245 0.97486 0.93571 1.01102 1.21676 0.98955 0.89486 1.06688 1.21171 0.87737 0.86477 0.74414 1.90708 1.16346 1.88295 1.51163 1.45979 1.10971 1.04392 1.75385 1.20101 0.92825 0.80593 1.02679 1.19501 0.99612 0.98308 0.93479 1.21277 0.97812 0.95844 0.97410 1.21475 0.96562 0.97020 0.99184 1.21545 0.99628 0.99897 0.92335 1.21123 0.97497 0.95378 0.99080 1.19764 0.97623 0.97334 0.93829 1.20913 0.94970 0.95548 0.84873 1.86357 1.69515 1.62797 1.20534 0.92866 0.99707 0.99656 0.92058 0.92150 0.93851 0.93746 0.86333 0.86466 0.74877 0.91104 0.91368 0.84545 0.83625 0.83896 0.85165 0.91561 0.92042 0.74799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 11 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 12 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 13 C 0.51 13.34 7.83 87.66 0.69 14.03 16 14 O -0.59 -21.15 15.98 -3.05 -0.05 -21.20 16 15 N -0.71 -12.91 5.35 -466.79 -2.50 -15.41 16 16 C 0.16 2.92 5.21 85.63 0.45 3.36 16 17 C -0.11 -1.69 5.25 -19.87 -0.10 -1.80 16 18 C -0.11 -1.44 9.67 22.27 0.22 -1.22 16 19 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 20 C -0.12 -1.46 10.05 22.27 0.22 -1.23 16 21 C -0.11 -1.76 9.38 22.27 0.21 -1.55 16 22 C -0.08 -1.37 5.88 -19.87 -0.12 -1.49 16 23 C 0.11 1.65 6.28 71.24 0.45 2.10 16 24 O -0.58 -7.98 12.14 -148.98 -1.81 -9.79 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 31 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.41 5.36 8.46 -92.71 -0.78 4.57 16 35 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16 36 H 0.07 1.34 7.06 -2.39 -0.02 1.32 16 37 H 0.14 1.53 8.04 -2.91 -0.02 1.51 16 38 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.13 2.06 7.01 -2.91 -0.02 2.04 16 41 H 0.07 0.90 7.94 -2.39 -0.02 0.88 16 42 H 0.06 0.87 7.55 -2.39 -0.02 0.86 16 43 H 0.40 2.15 9.12 -74.06 -0.68 1.48 16 Total: -1.00 -77.66 362.50 1.04 -76.62 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -0.45 Total: 10.69 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.54 Total: -28.97 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -2.21 Total: -74.25 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.86 Total: -30.99 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.66 1.04 -76.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588303999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.502 kcal (2) G-P(sol) polarization free energy of solvation -77.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds