Wall clock time and date at job start Tue Mar 31 2020 08:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00493 * 2 1 4 4 H 1.48497 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47245 * 300.00268 * 3 2 1 6 6 H 1.48504 * 109.47257 * 60.00025 * 3 2 1 7 7 C 1.37886 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46783 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46829 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47024 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00058 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00083 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99959 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46853 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.46986 * 180.02562 * 17 16 15 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 0.97009 * 119.99729 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46798 * 59.99583 * 9 7 2 27 27 H 1.09005 * 109.46531 * 300.00013 * 9 7 2 28 28 H 1.08997 * 109.47139 * 59.99751 * 10 9 7 29 29 H 1.09007 * 109.46745 * 299.99489 * 10 9 7 30 30 H 1.08997 * 109.47449 * 59.99987 * 11 10 9 31 31 H 1.09000 * 109.46749 * 299.99463 * 11 10 9 32 32 H 1.08997 * 109.46838 * 59.99952 * 12 11 10 33 33 H 1.09002 * 109.46999 * 300.00188 * 12 11 10 34 34 H 0.96999 * 119.99576 * 359.97438 * 15 13 12 35 35 H 1.09002 * 109.47347 * 59.99482 * 16 15 13 36 36 H 1.09007 * 109.47051 * 299.99336 * 16 15 13 37 37 H 1.09002 * 109.47572 * 59.99614 * 17 16 15 38 38 H 1.09000 * 109.47040 * 299.99268 * 17 16 15 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4799 -4.9872 0.0025 12 6 2.4742 -6.1502 0.0031 13 6 1.7207 -7.4552 0.0044 14 8 0.5079 -7.4551 0.0052 15 7 2.3945 -8.6224 0.0056 16 6 1.6619 -9.8911 0.0063 17 6 2.6561 -11.0540 0.0084 18 6 1.9025 -12.3591 0.0084 19 6 1.5552 -12.9563 1.2064 20 6 0.8644 -14.1537 1.2099 21 6 0.5133 -14.7536 0.0157 22 6 0.8651 -14.1592 -1.1872 23 8 0.5258 -14.7500 -2.3631 24 6 1.5589 -12.9576 -1.1880 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8904 28 1 2.8710 -3.6040 0.8922 29 1 2.8724 -3.6048 -0.8878 30 1 0.8537 -5.0455 -0.8877 31 1 0.8530 -5.0442 0.8923 32 1 3.1008 -6.0919 0.8931 33 1 3.1009 -6.0929 -0.8869 34 1 3.3645 -8.6224 0.0054 35 1 1.0356 -9.9495 -0.8839 36 1 1.0349 -9.9481 0.8962 37 1 3.2821 -10.9954 0.8988 38 1 3.2834 -10.9973 -0.8812 39 1 1.8242 -12.4863 2.1409 40 1 0.5947 -14.6183 2.1469 41 1 -0.0305 -15.6866 0.0190 42 1 1.1927 -15.3628 -2.7022 43 1 1.8304 -12.4909 -2.1234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588328651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:03 Heat of formation + Delta-G solvation = -90.954346 kcal Electronic energy + Delta-G solvation = -21187.162617 eV Core-core repulsion = 17810.062580 eV Total energy + Delta-G solvation = -3377.100037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.29634 -39.59265 -37.48056 -35.58758 -34.77979 -32.91868 -32.52986 -30.42238 -29.89579 -28.54705 -25.71593 -23.95146 -23.03281 -22.14853 -21.60252 -20.24676 -19.93137 -18.43552 -16.91123 -16.66971 -16.43720 -16.26915 -15.97772 -15.74053 -15.50462 -14.73302 -14.43729 -14.25159 -13.77308 -13.60641 -13.48061 -13.00524 -12.61250 -12.51753 -12.20395 -12.12334 -11.97119 -11.66247 -11.55962 -11.53347 -10.97636 -10.92524 -10.51074 -10.46735 -10.38538 -9.80752 -9.58837 -9.31599 -9.19798 -9.16620 -9.02895 -8.94086 -8.28888 -5.93415 -3.95800 0.78084 0.86414 2.75776 3.04419 3.22353 3.34378 3.41479 3.45464 3.75007 4.34391 4.38316 4.50586 4.63418 4.67146 4.71911 4.87051 4.98180 5.07558 5.13342 5.34614 5.35537 5.40444 5.42328 5.51861 5.58598 5.69869 5.90071 5.94676 5.96871 6.11423 6.17048 6.29668 6.34122 6.36727 6.57895 6.87139 7.05295 7.20431 7.22798 7.44303 7.76738 7.92750 8.08334 8.29032 8.50118 9.12207 9.67737 11.17932 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.047350 B = 0.001771 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.194466 B =15809.537379 C =15898.116928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.534 6.534 15 N -0.741 5.741 16 C 0.124 3.876 17 C -0.092 4.092 18 C -0.064 4.064 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.148 4.148 22 C 0.106 3.894 23 O -0.499 6.499 24 C -0.139 4.139 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.390 0.610 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 -32.964 0.195 33.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.298 3.702 14 O -0.410 6.410 15 N -0.395 5.395 16 C 0.000 4.000 17 C -0.130 4.130 18 C -0.064 4.064 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.167 4.167 22 C 0.061 3.939 23 O -0.309 6.309 24 C -0.158 4.158 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.246 0.754 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.635 -32.505 0.248 33.177 hybrid contribution 1.262 0.538 -0.102 1.376 sum 7.897 -31.967 0.146 32.929 Atomic orbital electron populations 1.69988 1.06046 1.26368 1.51036 1.25052 0.94846 0.99247 0.95504 0.86553 0.80064 0.83932 0.77528 1.19795 1.21065 1.21071 1.21331 0.93020 0.91200 1.50235 0.92695 1.19110 0.94093 0.91300 0.97340 1.21650 0.99065 0.94017 1.00050 1.21457 0.97042 0.92718 1.02970 1.21793 1.00077 0.91984 1.03963 1.21120 0.88471 0.85575 0.75009 1.90716 1.14291 1.87671 1.48297 1.46101 1.10225 1.05679 1.77446 1.21256 0.94248 0.81648 1.02849 1.20808 0.97425 0.90806 1.03928 1.19553 0.98316 0.95806 0.92768 1.21133 0.99302 0.95815 0.97773 1.21054 0.97633 0.95444 0.97794 1.21458 1.01964 1.01240 0.92030 1.18468 0.96997 0.93099 0.85302 1.84852 1.47331 1.62420 1.36343 1.21357 0.99593 0.96279 0.98542 0.93114 0.96567 0.96575 0.93484 0.93482 0.91817 0.91808 0.89142 0.89141 0.76652 0.91408 0.91369 0.89908 0.90058 0.85522 0.85412 0.85440 0.75403 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.12 9.11 -34.43 -0.31 -15.43 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 13 C 0.51 7.18 7.83 -10.99 -0.09 7.09 16 14 O -0.53 -10.03 15.98 5.56 0.09 -9.94 16 15 N -0.74 -7.19 5.56 -60.30 -0.33 -7.52 16 16 C 0.12 1.15 5.66 -4.04 -0.02 1.13 16 17 C -0.09 -0.56 5.46 -27.88 -0.15 -0.71 16 18 C -0.06 -0.46 5.13 -104.64 -0.54 -1.00 16 19 C -0.12 -0.84 9.70 -39.56 -0.38 -1.22 16 20 C -0.10 -0.67 10.04 -39.60 -0.40 -1.06 16 21 C -0.15 -1.06 9.99 -39.43 -0.39 -1.46 16 22 C 0.11 0.84 6.70 -39.22 -0.26 0.58 16 23 O -0.50 -3.62 13.50 -19.44 -0.26 -3.88 16 24 C -0.14 -1.08 9.64 -39.43 -0.38 -1.46 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.40 2.54 8.47 -40.82 -0.35 2.19 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.39 0.86 9.06 45.56 0.41 1.27 16 43 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -36.63 367.55 -9.07 -45.69 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.23 Total: -1.77 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.58 Total: -18.13 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.40 Total: -34.54 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.17 Total: -13.83 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.63 -9.07 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588328651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.260 kcal (2) G-P(sol) polarization free energy of solvation -36.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds