Wall clock time and date at job start Tue Mar 31 2020 08:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00493 * 2 1 4 4 H 1.48497 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47245 * 300.00268 * 3 2 1 6 6 H 1.48504 * 109.47257 * 60.00025 * 3 2 1 7 7 C 1.37886 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46783 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46829 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47024 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00058 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00083 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99959 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46853 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.46986 * 180.02562 * 17 16 15 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 0.97009 * 119.99729 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46798 * 59.99583 * 9 7 2 27 27 H 1.09005 * 109.46531 * 300.00013 * 9 7 2 28 28 H 1.08997 * 109.47139 * 59.99751 * 10 9 7 29 29 H 1.09007 * 109.46745 * 299.99489 * 10 9 7 30 30 H 1.08997 * 109.47449 * 59.99987 * 11 10 9 31 31 H 1.09000 * 109.46749 * 299.99463 * 11 10 9 32 32 H 1.08997 * 109.46838 * 59.99952 * 12 11 10 33 33 H 1.09002 * 109.46999 * 300.00188 * 12 11 10 34 34 H 0.96999 * 119.99576 * 359.97438 * 15 13 12 35 35 H 1.09002 * 109.47347 * 59.99482 * 16 15 13 36 36 H 1.09007 * 109.47051 * 299.99336 * 16 15 13 37 37 H 1.09002 * 109.47572 * 59.99614 * 17 16 15 38 38 H 1.09000 * 109.47040 * 299.99268 * 17 16 15 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4993 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4799 -4.9872 0.0025 12 6 2.4742 -6.1502 0.0031 13 6 1.7207 -7.4552 0.0044 14 8 0.5079 -7.4551 0.0052 15 7 2.3945 -8.6224 0.0056 16 6 1.6619 -9.8911 0.0063 17 6 2.6561 -11.0540 0.0084 18 6 1.9025 -12.3591 0.0084 19 6 1.5552 -12.9563 1.2064 20 6 0.8644 -14.1537 1.2099 21 6 0.5133 -14.7536 0.0157 22 6 0.8651 -14.1592 -1.1872 23 8 0.5258 -14.7500 -2.3631 24 6 1.5589 -12.9576 -1.1880 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8904 28 1 2.8710 -3.6040 0.8922 29 1 2.8724 -3.6048 -0.8878 30 1 0.8537 -5.0455 -0.8877 31 1 0.8530 -5.0442 0.8923 32 1 3.1008 -6.0919 0.8931 33 1 3.1009 -6.0929 -0.8869 34 1 3.3645 -8.6224 0.0054 35 1 1.0356 -9.9495 -0.8839 36 1 1.0349 -9.9481 0.8962 37 1 3.2821 -10.9954 0.8988 38 1 3.2834 -10.9973 -0.8812 39 1 1.8242 -12.4863 2.1409 40 1 0.5947 -14.6183 2.1469 41 1 -0.0305 -15.6866 0.0190 42 1 1.1927 -15.3628 -2.7022 43 1 1.8304 -12.4909 -2.1234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588328651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:00 Heat of formation + Delta-G solvation = -116.529605 kcal Electronic energy + Delta-G solvation = -21188.271644 eV Core-core repulsion = 17810.062580 eV Total energy + Delta-G solvation = -3378.209063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.94038 -40.55617 -38.04117 -36.75100 -36.19614 -34.60333 -33.55664 -31.57686 -30.85917 -29.42722 -27.37976 -25.01300 -23.67924 -23.53021 -22.19924 -21.77807 -21.19817 -18.98543 -18.42040 -17.82585 -17.30122 -17.13096 -16.99749 -16.73287 -16.47292 -16.04439 -15.82355 -14.98148 -14.86262 -14.62360 -14.53625 -14.04596 -13.70698 -13.65577 -13.54769 -13.26167 -13.02349 -12.83473 -12.70667 -12.52007 -12.30139 -12.15321 -12.13920 -12.09330 -11.44708 -11.36648 -11.34504 -11.14332 -10.77138 -10.55397 -10.11357 -9.82658 -9.55305 -8.18333 -6.30538 0.26297 0.34470 1.40843 1.41931 1.55441 1.66915 2.20507 2.42524 2.67911 3.14393 3.28112 3.76954 3.90401 3.93490 4.05142 4.12506 4.13948 4.17944 4.23442 4.38865 4.54897 4.56369 4.68657 4.71006 4.81213 4.86832 4.89100 4.97409 5.04041 5.11118 5.20889 5.34817 5.36881 5.43266 5.46224 5.47596 5.58670 5.60209 5.79073 5.88877 5.90803 6.25829 6.58979 6.84211 6.88342 7.30891 7.39121 8.94135 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.047350 B = 0.001771 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.194466 B =15809.537379 C =15898.116928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.098 4.098 12 C -0.127 4.127 13 C 0.508 3.492 14 O -0.593 6.593 15 N -0.717 5.717 16 C 0.125 3.875 17 C -0.079 4.079 18 C -0.072 4.072 19 C -0.131 4.131 20 C -0.105 4.105 21 C -0.160 4.160 22 C 0.092 3.908 23 O -0.515 6.515 24 C -0.154 4.154 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.421 0.579 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.409 0.591 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.284 -33.533 0.608 35.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.021 4.021 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.166 4.166 13 C 0.297 3.703 14 O -0.473 6.473 15 N -0.370 5.370 16 C 0.001 3.999 17 C -0.116 4.116 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.123 4.123 21 C -0.178 4.178 22 C 0.048 3.952 23 O -0.328 6.328 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.268 0.732 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.795 -33.125 0.655 34.549 hybrid contribution 0.248 0.636 -0.245 0.725 sum 10.044 -32.489 0.409 34.009 Atomic orbital electron populations 1.70145 1.08103 1.27667 1.51970 1.26119 0.95802 1.03821 0.94823 0.85311 0.79206 0.78323 0.77648 1.18008 1.20514 1.20497 1.21799 0.93796 0.92186 1.50080 0.91459 1.19082 0.94758 0.93927 0.94283 1.21449 0.97782 0.92645 1.01410 1.21259 0.97586 0.93841 1.00901 1.21673 0.98844 0.89243 1.06886 1.21263 0.87745 0.86911 0.74423 1.90706 1.16776 1.88470 1.51325 1.45866 1.11277 1.04656 1.75238 1.21247 0.94942 0.82473 1.01215 1.20734 0.96573 0.88557 1.05737 1.19714 0.98543 0.96260 0.92763 1.21412 0.99169 0.96012 0.98315 1.21353 0.97118 0.95417 0.98446 1.21680 1.02189 1.01850 0.92103 1.18667 0.97285 0.93482 0.85757 1.84793 1.48620 1.63065 1.36320 1.21514 1.00161 0.96567 0.99053 0.92882 0.99789 0.99747 0.91924 0.91982 0.94088 0.93987 0.86059 0.86170 0.74156 0.93446 0.92813 0.87804 0.88505 0.84000 0.83448 0.84408 0.73175 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 2 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.91 5.15 30.59 0.16 -3.75 16 11 C -0.10 -3.57 4.50 30.60 0.14 -3.43 16 12 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 13 C 0.51 13.71 7.83 87.65 0.69 14.40 16 14 O -0.59 -22.81 15.98 -3.03 -0.05 -22.86 16 15 N -0.72 -12.32 5.56 -463.06 -2.57 -14.89 16 16 C 0.13 2.19 5.66 86.38 0.49 2.68 16 17 C -0.08 -0.77 5.46 29.85 0.16 -0.61 16 18 C -0.07 -0.96 5.13 -19.88 -0.10 -1.06 16 19 C -0.13 -1.61 9.70 22.28 0.22 -1.39 16 20 C -0.11 -1.26 10.04 22.25 0.22 -1.03 16 21 C -0.16 -2.18 9.99 22.37 0.22 -1.96 16 22 C 0.09 1.44 6.70 22.51 0.15 1.59 16 23 O -0.51 -7.34 13.50 -92.48 -1.25 -8.58 16 24 C -0.15 -2.33 9.64 22.36 0.22 -2.11 16 25 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.42 3.75 8.47 -92.71 -0.79 2.96 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 38 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 39 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.41 1.62 9.06 -74.05 -0.67 0.95 16 43 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -82.63 367.55 1.56 -81.07 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -0.46 Total: 7.37 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.57 Total: -29.90 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -2.29 Total: -74.18 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.30 Total: -31.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -82.63 1.56 -81.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588328651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.464 kcal (2) G-P(sol) polarization free energy of solvation -82.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds