Wall clock time and date at job start Tue Mar 31 2020 08:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48507 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47038 * 299.99832 * 3 2 1 6 6 H 1.48505 * 109.46789 * 59.99812 * 3 2 1 7 7 C 1.37879 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99556 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00277 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47342 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47342 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47089 * 180.02562 * 12 11 10 14 14 O 1.21285 * 120.00390 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00142 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00353 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47388 * 180.02562 * 16 15 13 18 18 C 1.38264 * 119.99747 * 270.02243 * 17 16 15 19 19 C 1.38205 * 119.99484 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.00498 * 359.81306 * 19 18 17 21 21 C 1.38217 * 119.99351 * 0.42077 * 20 19 18 22 22 C 1.50699 * 119.99610 * 179.81235 * 21 20 19 23 23 O 1.42903 * 109.47152 * 269.72650 * 22 21 20 24 24 C 1.38205 * 119.99984 * 90.00225 * 17 16 15 25 25 H 0.97004 * 120.00328 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47162 * 59.99872 * 9 7 2 27 27 H 1.08993 * 109.47056 * 299.99344 * 9 7 2 28 28 H 1.09003 * 109.47343 * 60.00003 * 10 9 7 29 29 H 1.09004 * 109.47320 * 300.00208 * 10 9 7 30 30 H 1.09004 * 109.46759 * 60.00435 * 11 10 9 31 31 H 1.09000 * 109.46919 * 300.00321 * 11 10 9 32 32 H 1.09003 * 109.47343 * 60.00341 * 12 11 10 33 33 H 1.09000 * 109.47376 * 300.00041 * 12 11 10 34 34 H 0.96998 * 119.99923 * 359.97438 * 15 13 12 35 35 H 1.09003 * 109.46759 * 59.99681 * 16 15 13 36 36 H 1.09004 * 109.47264 * 300.00278 * 16 15 13 37 37 H 1.07992 * 119.99832 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.99707 * 180.02562 * 19 18 17 39 39 H 1.07994 * 120.00185 * 180.22639 * 20 19 18 40 40 H 1.08997 * 109.47198 * 149.72328 * 22 21 20 41 41 H 1.09008 * 109.47393 * 29.72044 * 22 21 20 42 42 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00366 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5081 -7.4552 0.0015 15 7 2.3949 -8.6223 0.0005 16 6 1.6624 -9.8911 0.0011 17 6 2.6417 -11.0365 0.0016 18 6 3.0912 -11.5622 -1.1956 19 6 3.9897 -12.6123 -1.1950 20 6 4.4420 -13.1347 0.0025 21 6 3.9888 -12.6123 1.1993 22 6 4.4785 -13.1844 2.5046 23 8 3.6090 -14.2405 2.9178 24 6 3.0907 -11.5613 1.1987 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8887 31 1 0.8539 -5.0446 0.8914 32 1 3.1018 -6.0923 0.8901 33 1 3.1005 -6.0924 -0.8899 34 1 3.3648 -8.6224 0.0002 35 1 1.0354 -9.9490 -0.8886 36 1 1.0360 -9.9487 0.8913 37 1 2.7403 -11.1522 -2.1310 38 1 4.3412 -13.0227 -2.1302 39 1 5.1469 -13.9529 0.0029 40 1 4.4866 -12.4024 3.2638 41 1 5.4879 -13.5749 2.3744 42 1 3.8640 -14.6559 3.7531 43 1 2.7401 -11.1502 2.1339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588350982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:45 Heat of formation + Delta-G solvation = -92.573949 kcal Electronic energy + Delta-G solvation = -21366.834265 eV Core-core repulsion = 17989.663997 eV Total energy + Delta-G solvation = -3377.170268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23287 -39.36685 -37.17401 -35.25974 -34.71061 -32.63816 -32.15413 -31.65191 -29.70460 -26.87347 -26.42975 -25.13043 -22.61466 -22.20706 -21.06044 -20.24973 -19.92997 -17.94346 -17.26701 -16.66768 -16.30946 -16.22301 -15.89949 -15.61792 -15.30581 -14.56564 -14.42774 -14.08512 -13.99581 -13.67319 -13.32941 -13.02735 -12.87548 -12.61381 -12.52221 -12.03148 -11.67547 -11.59591 -11.46065 -11.35606 -10.97780 -10.58852 -10.51045 -10.46857 -10.38519 -9.91524 -9.58844 -9.31607 -9.28465 -9.16403 -9.11267 -8.93288 -8.28982 -5.93529 -3.95892 0.78077 0.91481 2.75382 3.00842 3.34236 3.41281 3.44996 3.46297 3.96177 4.22207 4.41041 4.50431 4.51638 4.67029 4.75593 4.86365 4.93748 5.00881 5.05418 5.27491 5.34453 5.40618 5.42401 5.44641 5.59446 5.63546 5.89738 5.99841 6.09776 6.16134 6.17501 6.29294 6.34155 6.52149 6.58042 6.87172 7.05257 7.09559 7.22800 7.45660 7.76612 7.92681 8.08231 8.28437 8.50059 9.12095 9.67636 11.17812 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.001941 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.110622 B =14419.528297 C =14562.209002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.511 3.489 14 O -0.535 6.535 15 N -0.735 5.735 16 C 0.160 3.840 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.124 4.124 20 C -0.094 4.094 21 C -0.097 4.097 22 C 0.116 3.884 23 O -0.568 6.568 24 C -0.080 4.080 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.381 0.619 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -30.634 2.131 32.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.299 3.701 14 O -0.411 6.411 15 N -0.389 5.389 16 C 0.037 3.963 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.142 4.142 20 C -0.112 4.112 21 C -0.097 4.097 22 C 0.039 3.961 23 O -0.374 6.374 24 C -0.098 4.098 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.228 0.772 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.643 -30.340 1.579 32.191 hybrid contribution 1.250 0.708 0.486 1.517 sum 11.893 -29.631 2.065 31.996 Atomic orbital electron populations 1.69987 1.06034 1.26368 1.51061 1.25053 0.94851 0.99246 0.95517 0.86554 0.80069 0.83940 0.77528 1.19793 1.21064 1.21071 1.21328 0.93016 0.91199 1.50198 0.92706 1.19105 0.94087 0.91293 0.97335 1.21651 0.99068 0.94021 1.00054 1.21454 0.97026 0.92693 1.02968 1.21792 1.00083 0.91934 1.03984 1.21138 0.88461 0.85508 0.74989 1.90714 1.14234 1.87631 1.48490 1.46173 1.10300 1.05160 1.77249 1.20141 0.92482 0.80423 1.03258 1.19908 0.99341 0.98161 0.93391 1.21186 0.96401 0.95893 0.97741 1.21162 0.97940 0.96970 0.98114 1.21099 0.99341 0.98836 0.91915 1.19606 0.98910 0.96890 0.94320 1.20983 0.92368 0.89593 0.93151 1.86571 1.54620 1.51712 1.44484 1.21004 0.95425 0.95519 0.97872 0.93117 0.96574 0.96568 0.93497 0.93485 0.91803 0.91800 0.89155 0.89145 0.76574 0.90614 0.90687 0.85543 0.85570 0.85906 0.92549 0.92660 0.77168 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.85 5.70 -27.89 -0.16 -2.01 16 13 C 0.51 7.19 7.83 -10.99 -0.09 7.10 16 14 O -0.54 -9.87 15.98 5.55 0.09 -9.79 16 15 N -0.74 -7.56 5.55 -61.47 -0.34 -7.90 16 16 C 0.16 1.58 5.80 -5.20 -0.03 1.55 16 17 C -0.11 -0.91 5.25 -104.63 -0.55 -1.46 16 18 C -0.09 -0.72 9.70 -39.58 -0.38 -1.10 16 19 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 20 C -0.09 -0.67 9.70 -39.58 -0.38 -1.05 16 21 C -0.10 -0.76 5.51 -104.62 -0.58 -1.34 16 22 C 0.12 0.69 7.17 36.01 0.26 0.95 16 23 O -0.57 -3.93 13.64 -35.23 -0.48 -4.41 16 24 C -0.08 -0.66 9.36 -39.59 -0.37 -1.03 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.40 3.13 8.46 -40.82 -0.35 2.79 16 35 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 41 H 0.06 0.23 8.08 -51.92 -0.42 -0.19 16 42 H 0.38 0.79 9.12 45.56 0.42 1.21 16 43 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -36.15 367.84 -9.18 -45.33 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.22 Total: -1.20 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.49 Total: -17.62 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.40 Total: -34.88 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.39 Total: -14.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.15 -9.18 -45.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588350982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.246 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds