Wall clock time and date at job start Tue Mar 31 2020 08:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00066 * 2 1 4 4 H 1.48507 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47038 * 299.99832 * 3 2 1 6 6 H 1.48505 * 109.46789 * 59.99812 * 3 2 1 7 7 C 1.37879 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99556 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00277 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47342 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47342 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47089 * 180.02562 * 12 11 10 14 14 O 1.21285 * 120.00390 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00142 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00353 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47388 * 180.02562 * 16 15 13 18 18 C 1.38264 * 119.99747 * 270.02243 * 17 16 15 19 19 C 1.38205 * 119.99484 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.00498 * 359.81306 * 19 18 17 21 21 C 1.38217 * 119.99351 * 0.42077 * 20 19 18 22 22 C 1.50699 * 119.99610 * 179.81235 * 21 20 19 23 23 O 1.42903 * 109.47152 * 269.72650 * 22 21 20 24 24 C 1.38205 * 119.99984 * 90.00225 * 17 16 15 25 25 H 0.97004 * 120.00328 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47162 * 59.99872 * 9 7 2 27 27 H 1.08993 * 109.47056 * 299.99344 * 9 7 2 28 28 H 1.09003 * 109.47343 * 60.00003 * 10 9 7 29 29 H 1.09004 * 109.47320 * 300.00208 * 10 9 7 30 30 H 1.09004 * 109.46759 * 60.00435 * 11 10 9 31 31 H 1.09000 * 109.46919 * 300.00321 * 11 10 9 32 32 H 1.09003 * 109.47343 * 60.00341 * 12 11 10 33 33 H 1.09000 * 109.47376 * 300.00041 * 12 11 10 34 34 H 0.96998 * 119.99923 * 359.97438 * 15 13 12 35 35 H 1.09003 * 109.46759 * 59.99681 * 16 15 13 36 36 H 1.09004 * 109.47264 * 300.00278 * 16 15 13 37 37 H 1.07992 * 119.99832 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.99707 * 180.02562 * 19 18 17 39 39 H 1.07994 * 120.00185 * 180.22639 * 20 19 18 40 40 H 1.08997 * 109.47198 * 149.72328 * 22 21 20 41 41 H 1.09008 * 109.47393 * 29.72044 * 22 21 20 42 42 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00366 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5081 -7.4552 0.0015 15 7 2.3949 -8.6223 0.0005 16 6 1.6624 -9.8911 0.0011 17 6 2.6417 -11.0365 0.0016 18 6 3.0912 -11.5622 -1.1956 19 6 3.9897 -12.6123 -1.1950 20 6 4.4420 -13.1347 0.0025 21 6 3.9888 -12.6123 1.1993 22 6 4.4785 -13.1844 2.5046 23 8 3.6090 -14.2405 2.9178 24 6 3.0907 -11.5613 1.1987 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8887 31 1 0.8539 -5.0446 0.8914 32 1 3.1018 -6.0923 0.8901 33 1 3.1005 -6.0924 -0.8899 34 1 3.3648 -8.6224 0.0002 35 1 1.0354 -9.9490 -0.8886 36 1 1.0360 -9.9487 0.8913 37 1 2.7403 -11.1522 -2.1310 38 1 4.3412 -13.0227 -2.1302 39 1 5.1469 -13.9529 0.0029 40 1 4.4866 -12.4024 3.2638 41 1 5.4879 -13.5749 2.3744 42 1 3.8640 -14.6559 3.7531 43 1 2.7401 -11.1502 2.1339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588350982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:43 Heat of formation + Delta-G solvation = -118.051673 kcal Electronic energy + Delta-G solvation = -21367.939062 eV Core-core repulsion = 17989.663997 eV Total energy + Delta-G solvation = -3378.275065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03408 -40.25275 -37.66952 -36.69792 -35.92182 -34.60389 -32.85497 -32.35256 -31.32965 -28.10852 -26.95524 -26.58655 -24.06184 -23.03190 -21.80516 -21.71157 -21.22392 -18.42467 -18.37269 -18.11508 -17.46755 -17.08654 -16.88480 -16.62316 -16.47598 -15.89379 -15.62691 -14.87681 -14.84346 -14.55424 -14.52969 -14.02696 -13.94983 -13.64729 -13.55674 -13.39883 -13.26228 -13.03795 -12.83411 -12.31184 -12.14236 -12.12791 -12.07186 -11.87114 -11.36971 -11.35804 -11.16440 -10.99147 -10.85755 -10.55390 -10.15156 -9.85636 -9.78733 -8.18400 -6.30502 0.20535 0.35365 1.40565 1.41646 1.55134 1.64875 2.21115 2.42284 2.77403 3.14224 3.51465 3.61244 3.87349 3.88619 4.07616 4.08821 4.15534 4.16719 4.28775 4.32597 4.50292 4.54999 4.59167 4.69660 4.73714 4.73984 4.85650 4.89706 4.99946 5.07494 5.20499 5.33759 5.34267 5.42502 5.46275 5.55293 5.57990 5.58253 5.79026 5.88825 5.98206 6.25869 6.54362 6.88238 6.88626 7.25922 7.39034 8.94025 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.001941 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.110622 B =14419.528297 C =14562.209002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.127 4.127 13 C 0.511 3.489 14 O -0.588 6.588 15 N -0.714 5.714 16 C 0.163 3.837 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.110 4.110 22 C 0.115 3.885 23 O -0.592 6.592 24 C -0.091 4.091 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.400 0.600 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 -31.483 2.025 35.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.300 3.700 14 O -0.468 6.468 15 N -0.367 5.367 16 C 0.040 3.960 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.143 4.143 20 C -0.116 4.116 21 C -0.110 4.110 22 C 0.038 3.962 23 O -0.401 6.401 24 C -0.110 4.110 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.253 0.747 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.250 0.750 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.883 -31.234 1.487 34.212 hybrid contribution 0.240 0.882 0.530 1.057 sum 14.123 -30.351 2.017 33.537 Atomic orbital electron populations 1.70142 1.08063 1.27671 1.51967 1.26115 0.95815 1.03797 0.94848 0.85318 0.79192 0.78361 0.77661 1.18059 1.20480 1.20498 1.21790 0.93761 0.92204 1.50064 0.91541 1.19072 0.94732 0.93846 0.94336 1.21450 0.97808 0.92719 1.01345 1.21251 0.97513 0.93651 1.01046 1.21670 0.98920 0.89350 1.06736 1.21231 0.87758 0.86617 0.74411 1.90703 1.16472 1.88350 1.51294 1.45978 1.11049 1.04383 1.75278 1.20090 0.92812 0.80706 1.02385 1.19754 0.99599 0.98021 0.94036 1.21344 0.96611 0.96257 0.97699 1.21447 0.97329 0.96434 0.99095 1.21408 0.99382 0.99090 0.91737 1.19924 0.98711 0.96747 0.95631 1.21064 0.92912 0.89743 0.92510 1.86509 1.55475 1.52142 1.46001 1.21095 0.95958 0.96119 0.97796 0.92872 0.99695 0.99703 0.92054 0.92026 0.93852 0.93880 0.86337 0.86289 0.74718 0.91326 0.91801 0.84751 0.83451 0.84082 0.91776 0.90764 0.74996 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.29 21.45 0.28 -59.17 16 2 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.94 5.15 30.59 0.16 -3.79 16 11 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 12 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 13 C 0.51 14.04 7.83 87.66 0.69 14.73 16 14 O -0.59 -22.31 15.98 -3.04 -0.05 -22.36 16 15 N -0.71 -13.80 5.55 -466.78 -2.59 -16.39 16 16 C 0.16 3.20 5.80 85.63 0.50 3.69 16 17 C -0.11 -1.82 5.25 -19.87 -0.10 -1.93 16 18 C -0.10 -1.39 9.70 22.27 0.22 -1.18 16 19 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 20 C -0.10 -1.19 9.70 22.27 0.22 -0.97 16 21 C -0.11 -1.55 5.51 -19.87 -0.11 -1.66 16 22 C 0.11 1.15 7.17 71.24 0.51 1.66 16 23 O -0.59 -7.35 13.64 -148.98 -2.03 -9.38 16 24 C -0.09 -1.44 9.36 22.27 0.21 -1.23 16 25 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.04 1.73 8.10 -2.39 -0.02 1.72 16 31 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 33 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.42 5.53 8.46 -92.71 -0.78 4.74 16 35 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 36 H 0.06 1.40 8.08 -2.38 -0.02 1.38 16 37 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.06 0.52 8.09 -2.39 -0.02 0.50 16 41 H 0.07 0.44 8.08 -2.38 -0.02 0.42 16 42 H 0.40 1.07 9.12 -74.06 -0.68 0.40 16 43 H 0.12 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -80.35 367.84 0.84 -79.51 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -0.46 Total: 9.25 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.65 Total: -28.57 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -2.30 Total: -75.56 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -2.08 Total: -31.74 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -80.35 0.84 -79.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588350982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.541 kcal (2) G-P(sol) polarization free energy of solvation -80.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds