Wall clock time and date at job start Tue Mar 31 2020 08:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47240 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00041 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99618 * 179.97438 * 13 12 11 16 16 C 1.47021 * 125.65194 * 359.69703 * 15 13 12 17 17 C 1.54332 * 107.26357 * 178.84471 * 16 15 13 18 18 C 1.55149 * 103.02591 * 338.13982 * 17 16 15 19 19 H 1.09005 * 111.00297 * 277.23671 * 18 17 16 20 20 C 1.50701 * 111.00843 * 153.37961 * 18 17 16 21 21 C 1.34517 * 125.79036 * 127.51826 * 20 18 17 22 22 C 1.41381 * 106.84078 * 179.89315 * 21 20 18 23 23 C 1.34518 * 106.84058 * 0.37186 * 22 21 20 24 24 O 1.34303 * 125.78817 * 307.83175 * 20 18 17 25 25 C 1.47428 * 125.64312 * 179.97438 * 15 13 12 26 26 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 32 32 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 33 33 H 1.09004 * 109.47107 * 300.00294 * 12 11 10 34 34 H 1.09000 * 109.46866 * 60.00185 * 12 11 10 35 35 H 1.09004 * 109.88066 * 298.38967 * 16 15 13 36 36 H 1.08997 * 109.88246 * 59.55200 * 16 15 13 37 37 H 1.08997 * 110.84928 * 219.66844 * 17 16 15 38 38 H 1.09007 * 110.66415 * 96.52153 * 17 16 15 39 39 H 1.07996 * 126.57472 * 0.02980 * 21 20 18 40 40 H 1.07994 * 126.58107 * 180.12286 * 22 21 20 41 41 H 1.07994 * 125.78918 * 179.75449 * 23 22 21 42 42 H 1.09001 * 110.36915 * 322.92749 * 25 15 13 43 43 H 1.08993 * 110.36928 * 85.14987 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7212 -7.4551 0.0018 14 8 0.5084 -7.4552 0.0009 15 7 2.3952 -8.6223 0.0018 16 6 3.8583 -8.7669 -0.0045 17 6 4.1692 -10.2783 0.0278 18 6 2.8693 -10.8903 0.6132 19 1 2.8649 -10.8303 1.7016 20 6 2.6867 -12.3133 0.1520 21 6 2.4682 -13.3761 0.9471 22 6 2.3556 -14.5038 0.1018 23 6 2.5203 -14.0640 -1.1587 24 8 2.7206 -12.7364 -1.1222 25 6 1.7873 -9.9654 0.0024 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8721 -3.6042 -0.8894 30 1 2.8721 -3.6043 0.8905 31 1 0.8541 -5.0446 0.8913 32 1 0.8535 -5.0451 -0.8886 33 1 3.1015 -6.0927 -0.8882 34 1 3.1013 -6.0918 0.8918 35 1 4.2710 -8.3208 -0.9094 36 1 4.2823 -8.2842 0.8759 37 1 5.0196 -10.4856 0.6773 38 1 4.3535 -10.6547 -0.9785 39 1 2.3911 -13.3689 2.0243 40 1 2.1762 -15.5233 0.4094 41 1 2.4960 -14.6748 -2.0490 42 1 0.8883 -9.9747 0.6187 43 1 1.5518 -10.2756 -1.0156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588360338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:41 Heat of formation + Delta-G solvation = -42.677031 kcal Electronic energy + Delta-G solvation = -22059.514338 eV Core-core repulsion = 18684.507762 eV Total energy + Delta-G solvation = -3375.006576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.97377 -40.12363 -37.74711 -34.86659 -33.50804 -32.87954 -32.46389 -30.08187 -29.84420 -28.20230 -25.73648 -23.91365 -22.52126 -22.06276 -21.86915 -20.38909 -19.98255 -19.20166 -17.85609 -17.00685 -16.48440 -16.28716 -16.12632 -15.54965 -15.04300 -14.63828 -14.38487 -14.08270 -13.95875 -13.27724 -13.19028 -13.00542 -12.90083 -12.79883 -12.57991 -12.11685 -11.92563 -11.80350 -11.60153 -11.54009 -11.28270 -10.97629 -10.50910 -10.46780 -10.38487 -10.29142 -9.81883 -9.58789 -9.20494 -8.95557 -8.88848 -8.74997 -8.28901 -5.93477 -3.95876 1.32379 2.23146 2.53458 2.70861 2.87817 3.34330 3.41427 3.45403 4.05560 4.09629 4.20645 4.50433 4.56875 4.66135 4.73974 4.79941 4.87371 4.95093 5.26546 5.32384 5.34225 5.36183 5.41861 5.42671 5.49131 5.53574 5.59370 5.67514 5.73322 5.85882 6.07751 6.11157 6.16633 6.34002 6.57413 6.75734 6.86682 7.04184 7.22374 7.39223 7.76612 7.92575 8.08243 8.20576 8.50002 9.12121 9.67675 11.17892 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054981 B = 0.002084 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.146556 B =13433.723356 C =13689.896181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.529 3.471 14 O -0.532 6.532 15 N -0.628 5.628 16 C 0.100 3.900 17 C -0.126 4.126 18 C -0.022 4.022 19 H 0.115 0.885 20 C 0.001 3.999 21 C -0.205 4.205 22 C -0.214 4.214 23 C -0.040 4.040 24 O -0.173 6.173 25 C 0.113 3.887 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.203 0.797 42 H 0.083 0.917 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.043 -30.455 0.371 32.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.319 3.681 14 O -0.408 6.408 15 N -0.364 5.364 16 C -0.023 4.023 17 C -0.163 4.163 18 C -0.041 4.041 19 H 0.133 0.867 20 C -0.050 4.050 21 C -0.224 4.224 22 C -0.233 4.233 23 C -0.108 4.108 24 O -0.069 6.069 25 C -0.010 4.010 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.219 0.781 42 H 0.102 0.898 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.232 -30.034 0.121 31.421 hybrid contribution 0.444 0.532 0.112 0.703 sum 9.677 -29.502 0.234 31.049 Atomic orbital electron populations 1.69989 1.06036 1.26373 1.51062 1.25053 0.94853 0.99252 0.95515 0.86552 0.80065 0.83930 0.77526 1.19789 1.21069 1.21072 1.21324 0.93019 0.91190 1.50198 0.92695 1.19108 0.94081 0.91283 0.97341 1.21645 0.99066 0.93959 1.00064 1.21473 0.97041 0.92698 1.02996 1.21784 1.00016 0.91544 1.03912 1.20853 0.87922 0.84337 0.74972 1.90719 1.14040 1.86963 1.49046 1.48601 1.07076 1.05499 1.75267 1.22057 0.81055 0.96512 1.02640 1.22753 0.96982 0.93860 1.02747 1.20932 0.96421 0.85817 1.00959 0.86652 1.21936 1.05889 0.95823 0.81352 1.21626 1.08125 0.91832 1.00823 1.21847 1.08182 1.00394 0.92895 1.24067 1.05588 0.81125 1.00011 1.84005 1.70095 1.23753 1.29007 1.22178 0.96117 0.81321 1.01392 0.93117 0.96574 0.96563 0.93471 0.93475 0.91777 0.91785 0.89174 0.89139 0.90715 0.90710 0.89228 0.89856 0.83378 0.83411 0.78061 0.89823 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.13 -1.84 4.89 -27.88 -0.14 -1.98 16 13 C 0.53 7.89 7.85 -10.99 -0.09 7.80 16 14 O -0.53 -10.21 16.24 5.56 0.09 -10.12 16 15 N -0.63 -7.09 3.33 -170.52 -0.57 -7.66 16 16 C 0.10 0.76 6.49 -3.06 -0.02 0.74 16 17 C -0.13 -0.77 6.41 -24.90 -0.16 -0.93 16 18 C -0.02 -0.16 3.49 -89.63 -0.31 -0.48 16 19 H 0.12 0.71 8.13 -51.93 -0.42 0.28 16 20 C 0.00 0.00 5.95 -35.62 -0.21 -0.21 16 21 C -0.20 -1.57 10.80 -39.70 -0.43 -2.00 16 22 C -0.21 -1.49 10.91 -39.70 -0.43 -1.92 16 23 C -0.04 -0.27 12.09 29.42 0.36 0.08 16 24 O -0.17 -1.53 10.49 5.70 0.06 -1.47 16 25 C 0.11 1.15 6.36 -2.53 -0.02 1.14 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.54 7.89 -51.92 -0.41 0.13 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.20 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 43 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -35.32 360.42 -8.65 -43.97 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -7.12 Total: -4.43 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -2.26 Total: -15.75 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.17 Total: -34.66 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.15 Total: -11.59 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.32 -8.65 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.297 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds