Wall clock time and date at job start Tue Mar 31 2020 08:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47240 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00041 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99618 * 179.97438 * 13 12 11 16 16 C 1.47021 * 125.65194 * 359.69703 * 15 13 12 17 17 C 1.54332 * 107.26357 * 178.84471 * 16 15 13 18 18 C 1.55149 * 103.02591 * 338.13982 * 17 16 15 19 19 H 1.09005 * 111.00297 * 277.23671 * 18 17 16 20 20 C 1.50701 * 111.00843 * 153.37961 * 18 17 16 21 21 C 1.34517 * 125.79036 * 127.51826 * 20 18 17 22 22 C 1.41381 * 106.84078 * 179.89315 * 21 20 18 23 23 C 1.34518 * 106.84058 * 0.37186 * 22 21 20 24 24 O 1.34303 * 125.78817 * 307.83175 * 20 18 17 25 25 C 1.47428 * 125.64312 * 179.97438 * 15 13 12 26 26 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 32 32 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 33 33 H 1.09004 * 109.47107 * 300.00294 * 12 11 10 34 34 H 1.09000 * 109.46866 * 60.00185 * 12 11 10 35 35 H 1.09004 * 109.88066 * 298.38967 * 16 15 13 36 36 H 1.08997 * 109.88246 * 59.55200 * 16 15 13 37 37 H 1.08997 * 110.84928 * 219.66844 * 17 16 15 38 38 H 1.09007 * 110.66415 * 96.52153 * 17 16 15 39 39 H 1.07996 * 126.57472 * 0.02980 * 21 20 18 40 40 H 1.07994 * 126.58107 * 180.12286 * 22 21 20 41 41 H 1.07994 * 125.78918 * 179.75449 * 23 22 21 42 42 H 1.09001 * 110.36915 * 322.92749 * 25 15 13 43 43 H 1.08993 * 110.36928 * 85.14987 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7212 -7.4551 0.0018 14 8 0.5084 -7.4552 0.0009 15 7 2.3952 -8.6223 0.0018 16 6 3.8583 -8.7669 -0.0045 17 6 4.1692 -10.2783 0.0278 18 6 2.8693 -10.8903 0.6132 19 1 2.8649 -10.8303 1.7016 20 6 2.6867 -12.3133 0.1520 21 6 2.4682 -13.3761 0.9471 22 6 2.3556 -14.5038 0.1018 23 6 2.5203 -14.0640 -1.1587 24 8 2.7206 -12.7364 -1.1222 25 6 1.7873 -9.9654 0.0024 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8721 -3.6042 -0.8894 30 1 2.8721 -3.6043 0.8905 31 1 0.8541 -5.0446 0.8913 32 1 0.8535 -5.0451 -0.8886 33 1 3.1015 -6.0927 -0.8882 34 1 3.1013 -6.0918 0.8918 35 1 4.2710 -8.3208 -0.9094 36 1 4.2823 -8.2842 0.8759 37 1 5.0196 -10.4856 0.6773 38 1 4.3535 -10.6547 -0.9785 39 1 2.3911 -13.3689 2.0243 40 1 2.1762 -15.5233 0.4094 41 1 2.4960 -14.6748 -2.0490 42 1 0.8883 -9.9747 0.6187 43 1 1.5518 -10.2756 -1.0156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588360338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:33 Heat of formation + Delta-G solvation = -63.826923 kcal Electronic energy + Delta-G solvation = -22060.431466 eV Core-core repulsion = 18684.507762 eV Total energy + Delta-G solvation = -3375.923704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.52150 -41.11480 -38.69775 -36.61932 -34.63950 -34.10972 -33.49596 -31.48040 -30.71145 -29.07916 -27.37886 -25.12241 -23.51979 -23.07139 -22.54905 -21.72419 -20.96071 -20.17198 -18.49671 -18.40867 -17.96742 -17.27620 -16.90039 -16.69390 -16.48013 -16.07268 -15.36452 -15.28791 -14.59261 -14.53885 -14.13086 -13.93898 -13.76126 -13.71880 -13.52198 -13.41610 -13.39303 -13.26251 -12.84412 -12.54209 -12.37117 -12.27106 -12.16307 -12.13158 -11.80396 -11.37632 -11.35546 -11.15602 -10.84317 -10.81451 -10.55364 -9.75196 -9.35847 -8.18297 -6.30471 0.77235 1.40841 1.41939 1.55440 1.57512 1.70007 1.86484 2.14676 2.42388 3.14389 3.38789 3.51017 3.62366 3.82474 4.03547 4.08398 4.12615 4.17920 4.22377 4.27011 4.39328 4.55156 4.64504 4.66820 4.75012 4.80130 4.84270 4.86234 4.94825 4.97539 5.03542 5.14769 5.19037 5.23060 5.28065 5.34880 5.37915 5.57290 5.61711 5.78443 5.88561 6.21902 6.25692 6.42181 6.88287 7.10833 7.39139 8.94209 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054981 B = 0.002084 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.146556 B =13433.723356 C =13689.896181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.120 4.120 13 C 0.524 3.476 14 O -0.590 6.590 15 N -0.622 5.622 16 C 0.092 3.908 17 C -0.116 4.116 18 C -0.012 4.012 19 H 0.130 0.870 20 C -0.017 4.017 21 C -0.213 4.213 22 C -0.228 4.228 23 C -0.044 4.044 24 O -0.191 6.191 25 C 0.109 3.891 26 H 0.262 0.738 27 H -0.016 1.016 28 H -0.015 1.015 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.232 0.768 42 H 0.065 0.935 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.387 -31.269 0.639 34.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.160 4.160 13 C 0.315 3.685 14 O -0.471 6.471 15 N -0.356 5.356 16 C -0.030 4.030 17 C -0.154 4.154 18 C -0.031 4.031 19 H 0.148 0.852 20 C -0.068 4.068 21 C -0.232 4.232 22 C -0.247 4.247 23 C -0.111 4.111 24 O -0.088 6.088 25 C -0.014 4.014 26 H 0.071 0.929 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.248 0.752 42 H 0.083 0.917 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.637 -30.892 0.391 33.380 hybrid contribution -0.645 0.679 0.009 0.936 sum 11.993 -30.214 0.400 32.509 Atomic orbital electron populations 1.70146 1.08089 1.27672 1.51996 1.26121 0.95811 1.03827 0.94845 0.85310 0.79215 0.78323 0.77641 1.17991 1.20532 1.20494 1.21787 0.93793 0.92149 1.50032 0.91449 1.19073 0.94728 0.93871 0.94309 1.21438 0.97788 0.92517 1.01438 1.21262 0.97500 0.93716 1.00987 1.21649 0.98822 0.88891 1.06598 1.20996 0.87282 0.85634 0.74630 1.90698 1.16446 1.87848 1.52089 1.48602 1.09000 1.04814 1.73164 1.22410 0.78337 0.97912 1.04293 1.22754 0.97019 0.92483 1.03105 1.20889 0.95741 0.84854 1.01566 0.85194 1.22092 1.07006 0.96256 0.81404 1.21944 1.07506 0.92060 1.01675 1.22180 1.08325 1.01187 0.92986 1.24756 1.04450 0.80594 1.01285 1.83995 1.70519 1.24842 1.29457 1.22214 0.96819 0.81664 1.00727 0.92884 0.99793 0.99687 0.92006 0.91852 0.93831 0.94052 0.86526 0.86145 0.89487 0.88543 0.86585 0.90241 0.82130 0.81650 0.75150 0.91655 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.51 9.11 25.60 0.23 -31.28 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.09 -3.89 5.15 30.60 0.16 -3.74 16 11 C -0.10 -3.59 4.50 30.60 0.14 -3.45 16 12 C -0.12 -3.12 4.89 29.85 0.15 -2.97 16 13 C 0.52 15.49 7.85 87.66 0.69 16.18 16 14 O -0.59 -23.72 16.24 -3.04 -0.05 -23.77 16 15 N -0.62 -13.34 3.33 -811.80 -2.70 -16.04 16 16 C 0.09 1.10 6.49 86.73 0.56 1.66 16 17 C -0.12 -1.10 6.41 31.78 0.20 -0.89 16 18 C -0.01 -0.15 3.49 -10.15 -0.04 -0.19 16 19 H 0.13 1.32 8.13 -2.38 -0.02 1.30 16 20 C -0.02 -0.27 5.95 24.83 0.15 -0.12 16 21 C -0.21 -3.00 10.80 22.19 0.24 -2.76 16 22 C -0.23 -2.84 10.91 22.19 0.24 -2.59 16 23 C -0.04 -0.53 12.09 66.97 0.81 0.28 16 24 O -0.19 -3.22 10.49 -2.51 -0.03 -3.25 16 25 C 0.11 2.23 6.36 86.85 0.55 2.78 16 26 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 33 H 0.12 2.44 8.14 -2.38 -0.02 2.43 16 34 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.85 7.89 -2.38 -0.02 0.83 16 39 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.23 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 43 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -80.16 360.42 5.20 -74.97 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.97 Total: 6.34 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.70 Total: -26.05 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.41 Total: -75.33 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.08 Total: -27.01 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -80.16 5.20 -74.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588360338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.138 kcal (2) G-P(sol) polarization free energy of solvation -80.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds