Wall clock time and date at job start Tue Mar 31 2020 07:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00102 * 3 2 1 5 5 H 1.48507 * 109.47057 * 30.00285 * 3 2 1 6 6 H 1.48496 * 109.47085 * 149.99932 * 3 2 1 7 7 C 1.37869 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00403 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00111 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47401 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47217 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00098 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00166 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00156 * 179.97438 * 15 13 12 17 17 H 1.08991 * 109.47169 * 325.00089 * 16 15 13 18 18 C 1.52999 * 109.47084 * 84.99768 * 16 15 13 19 19 O 1.42903 * 109.47256 * 65.00345 * 18 16 15 20 20 C 1.50699 * 109.46998 * 204.99776 * 16 15 13 21 21 C 1.38231 * 120.00361 * 319.72665 * 20 16 15 22 22 C 1.38234 * 120.00460 * 179.81084 * 21 20 16 23 23 C 1.38235 * 119.99695 * 0.39509 * 22 21 20 24 24 C 1.38241 * 120.00162 * 359.86039 * 23 22 21 25 25 C 1.38234 * 119.99846 * 359.95275 * 24 23 22 26 26 H 0.96993 * 120.00427 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46819 * 59.99726 * 9 7 2 28 28 H 1.08994 * 109.47042 * 300.00044 * 9 7 2 29 29 H 1.08993 * 109.47084 * 59.99615 * 10 9 7 30 30 H 1.09011 * 109.46952 * 300.00259 * 10 9 7 31 31 H 1.09003 * 109.46961 * 59.99792 * 11 10 9 32 32 H 1.08994 * 109.46883 * 300.00120 * 11 10 9 33 33 H 1.09002 * 109.46867 * 59.99565 * 12 11 10 34 34 H 1.09004 * 109.46682 * 299.99775 * 12 11 10 35 35 H 0.97004 * 119.99534 * 359.97438 * 15 13 12 36 36 H 1.08997 * 109.47286 * 304.99906 * 18 16 15 37 37 H 1.09008 * 109.47201 * 184.99686 * 18 16 15 38 38 H 0.96700 * 114.00311 * 180.02562 * 19 18 16 39 39 H 1.08008 * 119.99926 * 359.97438 * 21 20 16 40 40 H 1.07995 * 120.00563 * 180.23291 * 22 21 20 41 41 H 1.08004 * 119.99982 * 179.83756 * 23 22 21 42 42 H 1.07992 * 119.99876 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00385 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 6 6.0618 -4.0787 -0.0002 13 6 7.5687 -4.0786 -0.0008 14 8 8.1751 -3.0283 -0.0012 15 7 8.2427 -5.2458 -0.0008 16 6 9.7077 -5.2457 -0.0019 17 1 10.0705 -4.4042 -0.5919 18 6 10.2188 -5.1193 1.4347 19 8 9.8415 -6.2797 2.1784 20 6 10.2096 -6.5337 -0.6021 21 6 9.5792 -7.7272 -0.3038 22 6 10.0372 -8.9081 -0.8574 23 6 11.1307 -8.8966 -1.7030 24 6 11.7645 -7.7037 -1.9973 25 6 11.3041 -6.5223 -1.4466 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6802 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 3.6581 -3.1504 -0.8906 30 1 3.6587 -3.1500 0.8893 31 1 5.9149 -2.1223 0.8890 32 1 5.9150 -2.1225 -0.8909 33 1 5.6984 -4.5931 -0.8899 34 1 5.6984 -4.5921 0.8901 35 1 7.7577 -6.0859 0.0000 36 1 9.7845 -4.2335 1.8982 37 1 11.3052 -5.0299 1.4273 38 1 10.1327 -6.2679 3.1004 39 1 8.7271 -7.7367 0.3599 40 1 9.5424 -9.8400 -0.6274 41 1 11.4902 -9.8196 -2.1336 42 1 12.6190 -7.6948 -2.6575 43 1 11.7988 -5.5904 -1.6767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588669841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:27 Heat of formation + Delta-G solvation = -108.216397 kcal Electronic energy + Delta-G solvation = -22225.019280 eV Core-core repulsion = 18847.170705 eV Total energy + Delta-G solvation = -3377.848576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27090 -39.95750 -37.89391 -36.68055 -35.67400 -34.60148 -32.74639 -31.80694 -31.53196 -29.30533 -27.51146 -24.76256 -23.83689 -23.41557 -21.86625 -21.52634 -21.10933 -18.85349 -18.66391 -18.24912 -17.45727 -16.95884 -16.86155 -16.32902 -16.06225 -15.78627 -15.53315 -15.33484 -14.88967 -14.69655 -14.38972 -14.19413 -13.93403 -13.71516 -13.67574 -13.48480 -13.20741 -12.87402 -12.80531 -12.33103 -12.07398 -11.95938 -11.87183 -11.75230 -11.51681 -11.34482 -11.26285 -11.08905 -10.76045 -10.75381 -10.17840 -9.78664 -9.64531 -8.29398 -6.32524 0.40073 0.53326 1.35061 1.36413 1.49439 1.63554 2.16282 2.36202 2.90512 3.05872 3.31844 3.59506 3.83103 3.96825 4.03405 4.14044 4.16957 4.20369 4.31004 4.42301 4.48675 4.59139 4.63915 4.64764 4.69626 4.76894 4.79994 4.87336 5.07592 5.15088 5.16622 5.20482 5.27261 5.38876 5.57680 5.60693 5.65178 5.66080 5.68805 5.70973 6.11464 6.29834 6.51837 6.75405 6.83386 7.23049 7.32240 8.87210 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030975 B = 0.002418 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.733928 B =11575.028029 C =11762.724030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.132 4.132 13 C 0.515 3.485 14 O -0.582 6.582 15 N -0.710 5.710 16 C 0.186 3.814 17 H 0.094 0.906 18 C 0.075 3.925 19 O -0.573 6.573 20 C -0.098 4.098 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.123 4.123 26 H 0.266 0.734 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.412 0.588 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.394 0.606 39 H 0.127 0.873 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.177 -20.072 0.000 34.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.175 1.175 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.172 4.172 13 C 0.304 3.696 14 O -0.462 6.462 15 N -0.362 5.362 16 C 0.081 3.919 17 H 0.112 0.888 18 C -0.004 4.004 19 O -0.380 6.380 20 C -0.099 4.099 21 C -0.116 4.116 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.250 0.750 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.244 0.756 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 28.201 -19.393 -0.563 34.230 hybrid contribution -0.210 0.809 0.579 1.016 sum 27.991 -18.584 0.016 33.599 Atomic orbital electron populations 1.70061 1.08127 1.28085 1.52901 1.26010 0.95644 1.03452 0.94304 0.85678 0.79387 0.78541 0.79182 1.19220 1.20724 1.17545 1.21546 0.92135 0.93197 1.49945 0.94535 1.19576 0.93872 0.95856 0.96122 1.21341 0.93790 0.96755 1.01294 1.21268 0.94738 0.95538 1.01851 1.21683 0.89820 0.99278 1.06404 1.21133 0.91125 0.83157 0.74210 1.90676 1.71325 1.32852 1.51350 1.46016 1.06376 1.08923 1.74923 1.19893 0.80610 0.96269 0.95126 0.88817 1.22418 0.98869 0.87822 0.91286 1.86418 1.81846 1.41561 1.28216 1.19726 0.97476 0.94100 0.98587 1.21025 1.00063 0.91918 0.98617 1.21437 0.97267 0.98560 0.97465 1.21510 0.95859 0.98880 0.97958 1.21392 1.00673 0.92302 1.00182 1.21225 0.96495 0.99451 0.96992 0.92520 0.96747 0.96862 0.92518 0.92524 0.92905 0.92842 0.86815 0.86800 0.75002 0.94248 0.91460 0.75650 0.85514 0.84342 0.84116 0.84154 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.44 0.30 -60.63 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.95 46.21 27.47 68.60 1.88 48.10 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.25 -11.65 6.54 99.48 0.65 -10.99 16 7 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.02 -0.83 4.04 29.85 0.12 -0.70 16 10 C -0.09 -3.67 5.15 30.59 0.16 -3.51 16 11 C -0.10 -3.14 4.50 30.59 0.14 -3.01 16 12 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 13 C 0.52 13.29 7.79 87.65 0.68 13.97 16 14 O -0.58 -19.75 15.64 -3.02 -0.05 -19.79 16 15 N -0.71 -13.84 4.97 -446.12 -2.22 -16.06 16 16 C 0.19 3.48 2.61 44.25 0.12 3.60 16 17 H 0.09 2.00 7.44 -2.39 -0.02 1.98 16 18 C 0.08 1.26 6.84 71.98 0.49 1.75 16 19 O -0.57 -8.37 12.02 -148.98 -1.79 -10.16 16 20 C -0.10 -1.64 4.83 -19.87 -0.10 -1.74 16 21 C -0.10 -1.50 8.04 22.27 0.18 -1.32 16 22 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 23 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 24 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.12 -1.86 9.67 22.27 0.22 -1.65 16 26 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 28 H 0.01 0.63 7.57 -2.39 -0.02 0.62 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.41 6.31 6.89 -92.71 -0.64 5.67 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.39 2.80 9.12 -74.06 -0.68 2.12 16 39 H 0.13 1.81 6.67 -2.91 -0.02 1.79 16 40 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.65 8.04 -2.91 -0.02 1.62 16 Total: -1.00 -76.25 357.71 1.32 -74.93 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -0.36 Total: 14.06 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.56 Total: -30.44 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.92 Total: -76.69 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -1.84 Total: -29.96 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.88 Total: 48.10 kcal Total: -76.25 1.32 -74.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588669841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.288 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds