Wall clock time and date at job start Tue Mar 31 2020 07:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 120.00194 * 2 1 4 4 H 1.48499 * 109.47265 * 239.99856 * 3 2 1 5 5 H 1.48497 * 109.47346 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47253 * 119.99942 * 3 2 1 7 7 C 1.37883 * 119.99321 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99070 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00568 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47374 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47187 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47020 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47398 * 180.02562 * 12 11 10 14 14 O 1.21291 * 119.99801 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00456 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00341 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.46756 * 35.00840 * 16 15 13 18 18 C 1.52993 * 109.47545 * 275.00706 * 16 15 13 19 19 O 1.42903 * 109.47175 * 294.99585 * 18 16 15 20 20 C 1.50702 * 109.47266 * 154.99966 * 16 15 13 21 21 C 1.38234 * 120.00271 * 220.00163 * 20 16 15 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 16 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 39.98291 * 20 16 15 26 26 H 0.96998 * 119.99672 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.46872 * 60.00542 * 9 7 2 28 28 H 1.08998 * 109.47636 * 300.00499 * 9 7 2 29 29 H 1.09000 * 109.46876 * 60.00119 * 10 9 7 30 30 H 1.08994 * 109.47040 * 300.00501 * 10 9 7 31 31 H 1.09005 * 109.46756 * 60.00384 * 11 10 9 32 32 H 1.08999 * 109.47018 * 300.00235 * 11 10 9 33 33 H 1.09000 * 109.47145 * 59.99971 * 12 11 10 34 34 H 1.09003 * 109.47525 * 300.00288 * 12 11 10 35 35 H 0.96999 * 120.00011 * 0.02562 * 15 13 12 36 36 H 1.08995 * 109.47712 * 54.99361 * 18 16 15 37 37 H 1.08994 * 109.47408 * 175.00050 * 18 16 15 38 38 H 0.96694 * 114.00701 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.99769 * 359.97438 * 21 20 16 40 40 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00489 * 0.02562 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0015 11 6 1.4801 -4.9872 0.0020 12 6 2.4743 -6.1501 0.0024 13 6 1.7208 -7.4552 0.0023 14 8 0.5079 -7.4551 0.0024 15 7 2.3946 -8.6224 0.0021 16 6 1.6621 -9.8911 0.0025 17 1 0.7512 -9.7849 -0.5866 18 6 1.2987 -10.2698 1.4396 19 8 2.4932 -10.5228 2.1821 20 6 2.5258 -10.9701 -0.5983 21 6 1.9678 -11.9126 -1.4415 22 6 2.7602 -12.9019 -1.9930 23 6 4.1107 -12.9485 -1.7016 24 6 4.6689 -12.0053 -0.8592 25 6 3.8762 -11.0169 -0.3063 26 1 -0.4849 0.8401 -0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6246 -2.5564 0.8919 29 1 2.8725 -3.6041 0.8909 30 1 2.8712 -3.6048 -0.8890 31 1 0.8531 -5.0450 -0.8878 32 1 0.8538 -5.0447 0.8922 33 1 3.1010 -6.0920 0.8923 34 1 3.1010 -6.0928 -0.8876 35 1 3.3646 -8.6224 0.0023 36 1 0.7494 -9.4506 1.9035 37 1 0.6783 -11.1658 1.4335 38 1 2.3385 -10.7686 3.1044 39 1 0.9128 -11.8760 -1.6695 40 1 2.3244 -13.6381 -2.6522 41 1 4.7290 -13.7241 -2.1289 42 1 5.7239 -12.0419 -0.6312 43 1 4.3121 -10.2807 0.3526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588669842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:31 Heat of formation + Delta-G solvation = -110.826800 kcal Electronic energy + Delta-G solvation = -22168.159201 eV Core-core repulsion = 18790.197429 eV Total energy + Delta-G solvation = -3377.961771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27565 -39.95828 -37.89510 -36.64327 -35.68059 -34.60615 -32.68705 -31.75558 -31.26936 -29.25407 -27.37155 -24.87132 -23.97401 -23.50386 -21.94100 -21.49955 -21.12080 -18.67052 -18.43302 -18.23498 -17.46181 -16.95349 -16.85935 -16.49772 -16.05794 -15.77380 -15.51657 -15.30644 -14.81481 -14.55030 -14.36404 -14.19016 -13.86604 -13.66198 -13.59232 -13.28508 -13.18263 -12.84290 -12.77320 -12.37044 -12.15429 -12.12503 -11.95609 -11.86840 -11.37166 -11.35918 -11.19837 -11.05048 -10.73512 -10.53903 -10.18474 -9.78348 -9.64355 -8.18174 -6.30365 0.40384 0.53637 1.40476 1.44650 1.52473 1.63124 2.15664 2.42519 2.90801 3.14257 3.31523 3.59277 3.83712 3.96892 4.05908 4.13786 4.16906 4.20454 4.31209 4.41879 4.49086 4.59752 4.65672 4.68265 4.70449 4.79966 4.84559 4.89292 5.07771 5.16909 5.19800 5.33420 5.33943 5.41497 5.57384 5.58032 5.65379 5.71095 5.78661 5.88487 6.11783 6.25899 6.52002 6.83132 6.87810 7.23391 7.39022 8.93879 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.002298 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.463295 B =12183.647379 C =12409.543377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.094 4.094 12 C -0.129 4.129 13 C 0.514 3.486 14 O -0.584 6.584 15 N -0.708 5.708 16 C 0.185 3.815 17 H 0.092 0.908 18 C 0.076 3.924 19 O -0.572 6.572 20 C -0.098 4.098 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.098 4.098 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.015 1.015 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.413 0.587 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.638 -30.261 0.009 32.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.168 4.168 13 C 0.302 3.698 14 O -0.464 6.464 15 N -0.361 5.361 16 C 0.080 3.920 17 H 0.110 0.890 18 C -0.004 4.004 19 O -0.380 6.380 20 C -0.098 4.098 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.146 4.146 25 C -0.116 4.116 26 H 0.072 0.928 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.251 0.749 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.912 -30.015 -0.557 31.614 hybrid contribution -0.270 0.921 0.596 1.130 sum 9.642 -29.093 0.039 30.650 Atomic orbital electron populations 1.70131 1.08051 1.27811 1.51819 1.26107 0.95811 1.03758 0.94792 0.85427 0.78163 0.77665 0.79342 1.18930 1.21054 1.18898 1.21726 0.93729 0.92241 1.50339 0.91615 1.19052 0.94681 0.93764 0.94324 1.21450 0.97832 0.92788 1.01271 1.21234 0.97427 0.93500 1.01098 1.21672 0.99027 0.89595 1.06552 1.21177 0.87847 0.86530 0.74208 1.90688 1.16097 1.88300 1.51353 1.45992 1.10948 1.04245 1.74932 1.19893 0.95053 0.81904 0.95122 0.88994 1.22404 0.87245 0.99416 0.91303 1.86411 1.31186 1.92148 1.28213 1.19712 0.94720 0.96816 0.98601 1.21219 1.00714 0.95282 0.97013 1.21387 0.94320 0.98649 1.00172 1.21510 0.95469 0.99218 0.97971 1.21442 1.00824 0.94965 0.97411 1.21025 0.92921 0.99010 0.98646 0.92849 0.99711 0.99674 0.92111 0.92146 0.93772 0.93757 0.86515 0.86552 0.74916 0.94400 0.91433 0.75641 0.85317 0.84160 0.84047 0.84233 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.29 21.45 0.28 -59.18 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.98 5.15 30.60 0.16 -3.83 16 11 C -0.09 -3.47 4.50 30.59 0.14 -3.33 16 12 C -0.13 -3.32 5.70 29.85 0.17 -3.15 16 13 C 0.51 14.32 7.79 87.66 0.68 15.00 16 14 O -0.58 -21.55 15.65 -3.06 -0.05 -21.60 16 15 N -0.71 -14.73 4.97 -446.10 -2.22 -16.95 16 16 C 0.19 3.71 2.61 44.24 0.12 3.83 16 17 H 0.09 2.12 7.44 -2.39 -0.02 2.10 16 18 C 0.08 1.36 6.84 71.98 0.49 1.85 16 19 O -0.57 -8.84 12.04 -148.98 -1.79 -10.64 16 20 C -0.10 -1.71 4.83 -19.87 -0.10 -1.81 16 21 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 22 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 23 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 24 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 25 C -0.10 -1.54 8.05 22.27 0.18 -1.36 16 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 27 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 28 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.77 8.10 -2.38 -0.02 1.75 16 32 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.41 6.64 6.87 -92.71 -0.64 6.01 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.39 3.11 9.12 -74.06 -0.68 2.43 16 39 H 0.13 1.77 8.04 -2.91 -0.02 1.75 16 40 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.13 1.85 6.67 -2.91 -0.02 1.83 16 Total: -1.00 -77.14 361.33 1.51 -75.63 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.31 Total: 14.77 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 3.57 Total: -29.19 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.93 Total: -76.13 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.84 Total: -32.24 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -77.14 1.51 -75.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588669842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.195 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds